MELO3C006014 (gene) Melon (DHL92) v3.5.1

NameMELO3C006014
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta''
Locationchr6 : 571453 .. 572789 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCAATTACAAATTTGGTCTATGGTATTTTCCCCCAAAAAATTGTAATTTAATCTTTATAGTTAGTTAAAGTCCCATAAATATTTTATGAAAATTTTATCTAAATTAAAGTGACTAAATTTTAACTTTTTTTTTTTTCAATGCCACCAAATTTGGAGTCTAACCTAACAATTTTTAGAATTCAGTGAAAAATCTAGTTTCCTCTGGCTGAGTTCATATGAATAAATTGTATGATACTCAGCCAATTGGCATCCCAAGTTCAAGTCAGTACACAACAGAGAGAGAGAAACAGAAGGGAGAAAATGGGAAGTGAAGCAAAGCTAAGGCGGAATTATGAAGTACCAAAGCTTCCATTACTTGCAATTACAGCAATGGAGTCTCCAGATCGTTCTGGAATGCTAACCCCACCAATCTTTTCCTCAGTTTCAGTCCCATTTCGATGGGAAGAAGAACCTGGCAAGCCCAGGTTCTGTTTCAATTCTCTTAACATACCCACTCAAACTCAAACTCAAACAAACTCCCTTGAACTTCCACCAAGATTGTTACTAATGGATCCCAAAATCCCAAAACTCTCTCCTCGCATCCCCTCTCAAAAGGGTTTTTCCAGTTTCATAAGCACTGTTGTAGCTCATTCAGATTTCATAAAACTCAGCTTGGAGCTATGGTTTTGAGAAAGAGAGGAATGTTAATTGAGAAGGAATGGTTCTGTTGGTGGAGAAAATTGAATTTTAGGAGAAAAGGGGAAGTTGGGTCTGACTATGCTGCTGTATTTCCTTCTTCTTTGGATAAGGAGAGAAGCAGTTCAAGGATGAAAGTTGCTGTGACCCAGAAAGGTGGGAGCTTTTCTTCTTGTTTTGTCCAAGCCAAGACTGAGTTTTGGGTAATTTTAGAATTAGCCCTCTTCTTCTCTGATTTATATATGCATATGTTAACAATAATGATATTTTGAAGTTTATAAACATTTCCTGAGTAAACATGAGGGAATGAATGTTTTCTTCTAAAAGTCATCACCTGTTCTCCTTGATCATGCAGTTCTGTAGTTTTTCAAGCCATTTGTGATTATTAATGAAATTATTACTGTTTAACGAATTGCAGGGAAACGTAGGGGAAGGGTT

mRNA sequence

ATTCAATTACAAATTTGGTCTATGGTATTTTCCCCCAAAAAATTGTAATTTAATCTTTATAGTTAGTTAAAGTCCCATAAATATTTTATGAAAATTTTATCTAAATTAAAGTGACTAAATTTTAACTTTTTTTTTTTTCAATGCCACCAAATTTGGAGTCTAACCTAACAATTTTTAGAATTCAGTGAAAAATCTAGTTTCCTCTGGCTGAGTTCATATGAATAAATTGTATGATACTCAGCCAATTGGCATCCCAAGTTCAAGTCAGTACACAACAGAGAGAGAGAAACAGAAGGGAGAAAATGGGAAGTGAAGCAAAGCTAAGGCGGAATTATGAAGTACCAAAGCTTCCATTACTTGCAATTACAGCAATGGAGTCTCCAGATCGTTCTGGAATGCTAACCCCACCAATCTTTTCCTCAGTTTCAGTCCCATTTCGATGGGAAGAAGAACCTGGCAAGCCCAGGTTCTGTTTCAATTCTCTTAACATACCCACTCAAACTCAAACTCAAACAAACTCCCTTGAACTTCCACCAAGATTGTTACTAATGGATCCCAAAATCCCAAAACTCTCTCCTCGCATCCCCTCTCAAAAGGGTTTTTCCAGTTTCATAAGCACTGTTGTAGCTCATTCAGATTTCATAAAACTCAGCTTGGAGCTATGGTTTTGAGAAAGAGAGGAATGTTAATTGAGAAGGAATGGTTCTGTTGGTGGAGAAAATTGAATTTTAGGAGAAAAGGGGAAGTTGGGTCTGACTATGCTGCTGTATTTCCTTCTTCTTTGGATAAGGAGAGAAGCAGTTCAAGGATGAAAGTTGCTGTGACCCAGAAAGGGAAACGTAGGGGAAGGGTT

Coding sequence (CDS)

ATGATACTCAGCCAATTGGCATCCCAAGTTCAAGTCAGTACACAACAGAGAGAGAGAAACAGAAGGGAGAAAATGGGAAGTGAAGCAAAGCTAAGGCGGAATTATGAAGTACCAAAGCTTCCATTACTTGCAATTACAGCAATGGAGTCTCCAGATCGTTCTGGAATGCTAACCCCACCAATCTTTTCCTCAGTTTCAGTCCCATTTCGATGGGAAGAAGAACCTGGCAAGCCCAGGTTCTGTTTCAATTCTCTTAACATACCCACTCAAACTCAAACTCAAACAAACTCCCTTGAACTTCCACCAAGATTGTTACTAATGGATCCCAAAATCCCAAAACTCTCTCCTCGCATCCCCTCTCAAAAGGGTTTTTCCAGTTTCATAAGCACTGTTGTAGCTCATTCAGATTTCATAAAACTCAGCTTGGAGCTATGGTTTTGA
BLAST of MELO3C006014 vs. TrEMBL
Match: A0A0A0L338_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119480 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.3e-52
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 1

Query: 8   SQVQVSTQQRERNRREKMGSEAKLRRNYEVPKLPLLAITAMESPDRSGMLTPPIFSSVSV 67
           S   ++ ++RER RREKMGSEAKLRR+YEVPKLPLLAITAMESPDRSGMLTPP++SSVSV
Sbjct: 15  SSQYITERERERERREKMGSEAKLRRDYEVPKLPLLAITAMESPDRSGMLTPPMYSSVSV 74

Query: 68  PFRWEEEPGKPRFCFNSLNIPTQTQTQTNSLELPPRLLLMDPKIPKLSPRIPSQKGFSSF 127
           PFRWEEEPGKPRFCFNSLNIPTQTQTQT SLELPPRLLLMDPKI KLSP IPSQKGF  F
Sbjct: 75  PFRWEEEPGKPRFCFNSLNIPTQTQTQTYSLELPPRLLLMDPKISKLSPPIPSQKGFFQF 134

BLAST of MELO3C006014 vs. TrEMBL
Match: A0A068UKB7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027699001 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.4e-17
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1

Query: 38  PKLPLLAITAMESPDRSGMLTPPIFSSVSVPFRWEEEPGKPRFCFNSLNIPTQTQTQT-N 97
           PKLPL ++  ++SP+ SGMLTPP+++S SVPFRWEEEPGKPR C   + +PT T T++  
Sbjct: 9   PKLPLFSMATVQSPEHSGMLTPPLYTSASVPFRWEEEPGKPRPCTALITLPTSTTTESPR 68

Query: 98  SLELPPRLLLMDPKIPK 114
            L+LPPRL L   KI K
Sbjct: 69  CLDLPPRLFLEPSKITK 85

BLAST of MELO3C006014 vs. TrEMBL
Match: A0A0B0P5L5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08458 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-15
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1

Query: 25  MGSEAKLRRNYEVPKLPLLAITA--MESPDRSGMLTPPIFSSVSVPFRWEEEPGKPRFCF 84
           MGSE +   +   PKLPL + +   M+SP+RSGMLTPP+ +S SVPFRWEEEPGKP+ C 
Sbjct: 1   MGSEEE--ESTYTPKLPLFSASHAHMQSPERSGMLTPPLHASASVPFRWEEEPGKPKPCT 60

Query: 85  NSLNIPTQTQTQTNSLELPPRLLLMDPKIPKLS 116
              +  T   +    LELPPRLLL D KI KLS
Sbjct: 61  ALTSFTTLNDSAPKCLELPPRLLL-DAKIAKLS 90

BLAST of MELO3C006014 vs. TrEMBL
Match: A0A072U4Q9_MEDTR (DUF688 family protein OS=Medicago truncatula GN=MTR_7g117695 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-15
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1

Query: 25  MGSEAKLRRNYEVPKLPLLAITA--------MESPDRSGMLTPPIFSSVSVPFRWEEEPG 84
           MGSEAK  +   +P+LPL +++         MESP+R+G +TPP+ +S SVPF WE+EPG
Sbjct: 1   MGSEAKAEQESSIPRLPLFSVSPAAMKIQMQMESPERTGTVTPPLQTSGSVPFLWEQEPG 60

Query: 85  KPRFCFNSLNIPTQTQTQTNSLELPPRLLLM-DPKIPKLSPRIPSQK 123
           KPR C N+L +P    +    LELPPRLLL+  P + +  P + S +
Sbjct: 61  KPRLC-NAL-VPFTNPSSDKCLELPPRLLLVPSPTLLQQGPHVTSNR 105

BLAST of MELO3C006014 vs. TrEMBL
Match: A0A151SIS3_CAJCA (Uncharacterized protein At4g00950 family OS=Cajanus cajan GN=KK1_000826 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-15
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 1

Query: 36  EVPKLPLLAITAMESPDRSGMLTPPIFSSVSVPFRWEEEPGKPRFCFNSLNIPTQTQTQT 95
           +VP+LPLL    M SP+RSGM TPP+F+S SVPF WEEEPGKPR C  +  +P    T  
Sbjct: 14  KVPRLPLLNPPTMHSPERSGMQTPPLFTSASVPFGWEEEPGKPRPC--TALVPFSNPTTP 73

Query: 96  NSLELPPRLLL 107
            SLELPPRLLL
Sbjct: 74  KSLELPPRLLL 82

BLAST of MELO3C006014 vs. TAIR10
Match: AT4G27810.1 (AT4G27810.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-08
Identity = 30/74 (40.54%), Postives = 38/74 (51.35%), Query Frame = 1

Query: 38  PKLPLLAITAMESPDRSGMLTPPIFSSVSVPFRWEEEPGKPRFCFNSLNIPTQTQTQ--- 97
           PKLPL +I    + D  G+ TPP+  + SVPF WEE PGKPR    +  + ++   +   
Sbjct: 15  PKLPLFSIPFNRACDTPGLATPPVNIAGSVPFLWEEAPGKPRVSDENKPLASKQNEREGG 74

Query: 98  ----TNSLELPPRL 105
                  LELPPRL
Sbjct: 75  GGGVVRCLELPPRL 88

BLAST of MELO3C006014 vs. TAIR10
Match: AT4G00950.1 (AT4G00950.1 Protein of unknown function (DUF688))

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 35/93 (37.63%), Postives = 46/93 (49.46%), Query Frame = 1

Query: 28  EAKLRRNYEVPKLPLLAITAMESPDRSGMLTPPIFSSV--SVPFRWEEEPGKPRFCFNSL 87
           E +   N  V KLP+L     +    S  ++ PI SS+  SVPF WEEEPGKP+    S 
Sbjct: 6   ETEQEGNLTVMKLPVLPT---KPNTHSHSMSSPIHSSISASVPFSWEEEPGKPKQHSTSS 65

Query: 88  NIPTQTQTQTN----------SLELPPRLLLMD 109
           +  + +   T+          SLELPPRL L++
Sbjct: 66  SSSSSSSPLTSYSSSPFETHKSLELPPRLHLLE 95

BLAST of MELO3C006014 vs. TAIR10
Match: AT5G53030.1 (AT5G53030.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 6.9e-06
Identity = 25/52 (48.08%), Postives = 29/52 (55.77%), Query Frame = 1

Query: 55  GMLTPPIFSSVSVPFRWEEEPGKPRFCFNSLNIPTQTQTQTNSLELPPRLLL 107
           G+ TPP+  + SVPF WEE PGKPR       +    +    SLELPPRL+L
Sbjct: 36  GLATPPVNIAGSVPFLWEEAPGKPRRVKKPARL--NQKGVVRSLELPPRLVL 85

BLAST of MELO3C006014 vs. NCBI nr
Match: gi|778676860|ref|XP_011650675.1| (PREDICTED: uncharacterized protein At4g00950 isoform X3 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 1

Query: 8   SQVQVSTQQRERNRREKMGSEAKLRRNYEVPKLPLLAITAMESPDRSGMLTPPIFSSVSV 67
           S   ++ ++RER RREKMGSEAKLRR+YEVPKLPLLAITAMESPDRSGMLTPP++SSVSV
Sbjct: 15  SSQYITERERERERREKMGSEAKLRRDYEVPKLPLLAITAMESPDRSGMLTPPMYSSVSV 74

Query: 68  PFRWEEEPGKPRFCFNSLNIPTQTQTQTNSLELPPRLLLMDPKIPKLSPRIPSQKGFSSF 127
           PFRWEEEPGKPRFCFNSLNIPTQTQTQT SLELPPRLLLMDPKI KLSP IPSQKGF  F
Sbjct: 75  PFRWEEEPGKPRFCFNSLNIPTQTQTQTYSLELPPRLLLMDPKISKLSPPIPSQKGFFQF 134

BLAST of MELO3C006014 vs. NCBI nr
Match: gi|778676854|ref|XP_011650674.1| (PREDICTED: uncharacterized protein At4g00950 isoform X1 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 1

Query: 8   SQVQVSTQQRERNRREKMGSEAKLRRNYEVPKLPLLAITAMESPDRSGMLTPPIFSSVSV 67
           S   ++ ++RER RREKMGSEAKLRR+YEVPKLPLLAITAMESPDRSGMLTPP++SSVSV
Sbjct: 15  SSQYITERERERERREKMGSEAKLRRDYEVPKLPLLAITAMESPDRSGMLTPPMYSSVSV 74

Query: 68  PFRWEEEPGKPRFCFNSLNIPTQTQTQTNSLELPPRLLLMDPKIPKLSPRIPSQKGFSSF 127
           PFRWEEEPGKPRFCFNSLNIPTQTQTQT SLELPPRLLLMDPKI KLSP IPSQKGF  F
Sbjct: 75  PFRWEEEPGKPRFCFNSLNIPTQTQTQTYSLELPPRLLLMDPKISKLSPPIPSQKGFFQF 134

BLAST of MELO3C006014 vs. NCBI nr
Match: gi|778676863|ref|XP_011650676.1| (PREDICTED: uncharacterized protein At4g00950 isoform X4 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 1

Query: 8   SQVQVSTQQRERNRREKMGSEAKLRRNYEVPKLPLLAITAMESPDRSGMLTPPIFSSVSV 67
           S   ++ ++RER RREKMGSEAKLRR+YEVPKLPLLAITAMESPDRSGMLTPP++SSVSV
Sbjct: 15  SSQYITERERERERREKMGSEAKLRRDYEVPKLPLLAITAMESPDRSGMLTPPMYSSVSV 74

Query: 68  PFRWEEEPGKPRFCFNSLNIPTQTQTQTNSLELPPRLLLMDPKIPKLSPRIPSQKGFSSF 127
           PFRWEEEPGKPRFCFNSLNIPTQTQTQT SLELPPRLLLMDPKI KLSP IPSQKGF  F
Sbjct: 75  PFRWEEEPGKPRFCFNSLNIPTQTQTQTYSLELPPRLLLMDPKISKLSPPIPSQKGFFQF 134

BLAST of MELO3C006014 vs. NCBI nr
Match: gi|778676857|ref|XP_004133807.2| (PREDICTED: uncharacterized protein At4g00950 isoform X2 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 1

Query: 8   SQVQVSTQQRERNRREKMGSEAKLRRNYEVPKLPLLAITAMESPDRSGMLTPPIFSSVSV 67
           S   ++ ++RER RREKMGSEAKLRR+YEVPKLPLLAITAMESPDRSGMLTPP++SSVSV
Sbjct: 15  SSQYITERERERERREKMGSEAKLRRDYEVPKLPLLAITAMESPDRSGMLTPPMYSSVSV 74

Query: 68  PFRWEEEPGKPRFCFNSLNIPTQTQTQTNSLELPPRLLLMDPKIPKLSPRIPSQKGFSSF 127
           PFRWEEEPGKPRFCFNSLNIPTQTQTQT SLELPPRLLLMDPKI KLSP IPSQKGF  F
Sbjct: 75  PFRWEEEPGKPRFCFNSLNIPTQTQTQTYSLELPPRLLLMDPKISKLSPPIPSQKGFFQF 134

BLAST of MELO3C006014 vs. NCBI nr
Match: gi|661887528|emb|CDP08659.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1

Query: 38  PKLPLLAITAMESPDRSGMLTPPIFSSVSVPFRWEEEPGKPRFCFNSLNIPTQTQTQT-N 97
           PKLPL ++  ++SP+ SGMLTPP+++S SVPFRWEEEPGKPR C   + +PT T T++  
Sbjct: 9   PKLPLFSMATVQSPEHSGMLTPPLYTSASVPFRWEEEPGKPRPCTALITLPTSTTTESPR 68

Query: 98  SLELPPRLLLMDPKIPK 114
            L+LPPRL L   KI K
Sbjct: 69  CLDLPPRLFLEPSKITK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L338_CUCSA9.3e-5285.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119480 PE=4 SV=1[more]
A0A068UKB7_COFCA7.4e-1757.14Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027699001 PE=4 SV=1[more]
A0A0B0P5L5_GOSAR2.4e-1554.84Uncharacterized protein OS=Gossypium arboreum GN=F383_08458 PE=4 SV=1[more]
A0A072U4Q9_MEDTR5.3e-1544.86DUF688 family protein OS=Medicago truncatula GN=MTR_7g117695 PE=4 SV=1[more]
A0A151SIS3_CAJCA9.1e-1561.97Uncharacterized protein At4g00950 family OS=Cajanus cajan GN=KK1_000826 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT4G27810.14.3e-0840.54 unknown protein[more]
AT4G00950.13.1e-0637.63 Protein of unknown function (DUF688)[more]
AT5G53030.16.9e-0648.08 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778676860|ref|XP_011650675.1|1.3e-5185.83PREDICTED: uncharacterized protein At4g00950 isoform X3 [Cucumis sativus][more]
gi|778676854|ref|XP_011650674.1|1.3e-5185.83PREDICTED: uncharacterized protein At4g00950 isoform X1 [Cucumis sativus][more]
gi|778676863|ref|XP_011650676.1|1.3e-5185.83PREDICTED: uncharacterized protein At4g00950 isoform X4 [Cucumis sativus][more]
gi|778676857|ref|XP_004133807.2|1.3e-5185.83PREDICTED: uncharacterized protein At4g00950 isoform X2 [Cucumis sativus][more]
gi|661887528|emb|CDP08659.1|1.1e-1657.14unnamed protein product [Coffea canephora][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007789DUF688
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008536 Ran GTPase binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53252melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006014T2MELO3C006014T2mRNA
MELO3C006014T1MELO3C006014T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53252MU53252transcribed_cluster


The following gene(s) are paralogous to this gene:

None