MELO3C005460.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005460.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr09 : 21772128 .. 21773054 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTTTGGATAAAATCACAACTGATTGGACAAATAAACGAAGATTCATAAAAAGAAAATCCAACCGTAAAGCCTTAAATTAGTTATCTAATATTCATTGATCCAAAGTACAGAGACCAAAAACAATAAGGATGAAGAATGACAGCGTTTAAACCTGTATTTCATCAGTTCTTCAACCAGTAATCTGAATGAAATTCTATCAGCAAAGAAAATCGAGAACACAGCTAAAGCACACACAGGTTTGGAAATCAGTTGAAATTCTATGACTATTTTTTCTTTCGATAATTGTTTCACCAAAAGAAAGAAAAAAGAGAATCGAAATGAAAATTTTCATCAGTGAAAAAAAAAATATCAAGAACACAGTTGAATTAAAAATTGAAAACGAAATTACAGGAAATTGAAATATCATTAGCCAAGAATACGAGACGATGCTTTTTCTCCTTTCGATAATTCCATCATTAAATCCAAAAACAGAAAATCGGAACGAAATTAAAGCGCGTTGGAAAACAGATTGAAATCATCAGAAAACGAAGGACCAGAGCAAGAATAGAAAACAGAATCAGGCCTCAGACAGAGTGTTCTCAGTCATAAAATTATCAGACAATGTAGGCAAATCAAAATATCAATCATCACCGGCCTGATTCAGCAAGAAGAAAGAGAAATGAAAACAAGGAGAAAAGAGAAAAATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGATTGA

mRNA sequence

GAAGTTTGGATAAAATCACAACTGATTGGACAAATAAACGAAGATTCATAAAAAGAAAATCCAACCGTAAAGCCTTAAATTAGTTATCTAATATTCATTGATCCAAAGTACAGAGACCAAAAACAATAAGGATGAAGAATGACAGCGTTTAAACCTGTATTTCATCAGTTCTTCAACCAGTAATCTGAATGAAATTCTATCAGCAAAGAAAATCGAGAACACAGCTAAAGCACACACAGGTTTGGAAATCAGTTGAAATTCTATGACTATTTTTTCTTTCGATAATTGTTTCACCAAAAGAAAGAAAAAAGAGAATCGAAATGAAAATTTTCATCAGTGAAAAAAAAAATATCAAGAACACAGTTGAATTAAAAATTGAAAACGAAATTACAGGAAATTGAAATATCATTAGCCAAGAATACGAGACGATGCTTTTTCTCCTTTCGATAATTCCATCATTAAATCCAAAAACAGAAAATCGGAACGAAATTAAAGCGCGTTGGAAAACAGATTGAAATCATCAGAAAACGAAGGACCAGAGCAAGAATAGAAAACAGAATCAGGCCTCAGACAGAGTGTTCTCAGTCATAAAATTATCAGACAATGTAGGCAAATCAAAATATCAATCATCACCGGCCTGATTCAGCAAGAAGAAAGAGAAATGAAAACAAGGAGAAAAGAGAAAAATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGATTGA

Coding sequence (CDS)

ATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGA

Protein sequence

MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHKKEEKKVERGNSFGNEGAV

Homology

[Close]

BLAST of MELO3C005460.2 vs. NCBI nr
Match: KGN50326.1 (hypothetical protein Csa_5G167180 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHK 60
          MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESS+RS+SLARKYK+KS+ +
Sbjct: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKE 60

Query: 61 KEEKKVER 69
          +EE+  +R
Sbjct: 61 EEEEDWKR 68

[Close]

BLAST of MELO3C005460.2 vs. TrEMBL
Match: tr|A0A0A0KRH6|A0A0A0KRH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167180 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHK 60
          MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESS+RS+SLARKYK+KS+ +
Sbjct: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKE 60

Query: 61 KEEKKVER 69
          +EE+  +R
Sbjct: 61 EEEEDWKR 68

The following BLAST results are available for this feature:

BLAST of MELO3C005460.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50326.1	4.8e-20	83.82	hypothetical protein Csa_5G167180 [Cucumis sativus]	[more]

BLAST of MELO3C005460.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C005460.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C005460.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRH6\|A0A0A0KRH6_CUCSA	3.2e-20	83.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167180 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005460.2.1	MELO3C005460.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005460.2	Csa5G167180	Cucumber (Chinese Long) v2	cumedB339
MELO3C005460.2	CSPI05G07520	Wild cucumber (PI 183967)	cpimedB341
MELO3C005460.2	CsGy5G004980	Cucumber (Gy14) v2	cgybmedB301
MELO3C005460.2	ClCG01G004760	Watermelon (Charleston Gray)	medwcgB017
MELO3C005460.2	CsaV3_5G004950	Cucumber (Chinese Long) v3	cucmedB352

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005460.2	Cucumber (Gy14) v1	cgymedB204
MELO3C005460.2	Cucurbita maxima (Rimu)	cmamedB291
MELO3C005460.2	Cucurbita maxima (Rimu)	cmamedB610
MELO3C005460.2	Cucurbita moschata (Rifu)	cmomedB277
MELO3C005460.2	Cucurbita moschata (Rifu)	cmomedB597
MELO3C005460.2	Cucurbita pepo (Zucchini)	cpemedB174
MELO3C005460.2	Cucurbita pepo (Zucchini)	cpemedB775
MELO3C005460.2	Bottle gourd (USVL1VR-Ls)	lsimedB013
MELO3C005460.2	Watermelon (97103) v1	medwmB012
MELO3C005460.2	Watermelon (97103) v1	medwmB022
MELO3C005460.2	Silver-seed gourd	carmedB0718
MELO3C005460.2	Silver-seed gourd	carmedB1014
MELO3C005460.2	Watermelon (97103) v2	medwmbB007
MELO3C005460.2	Watermelon (97103) v2	medwmbB031
MELO3C005460.2	Wax gourd	medwgoB014
MELO3C005460.2	Wax gourd	medwgoB038