CSPI05G07520 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G07520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 6493949 .. 6494516 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACTATGCTTTTGCTTCATTTCGAAAATTCATCATTTAAATCAAGAAACAGAAAATCGGAATGAAATTAAAGCGCGTTGGAAAACGGATGGAAATCATCAGAAAATGAAGAATCAGAGCAAGAACTGAAAGCAGATTCAGGCCTCAGACAGAGTGTTCTCAGTCATAAAATTATCAGACAATGTAGGCAAATCAAAATATCAATCATCACCGGCCTGATTCAGCAAAAATAAATAGAAATGAAAACAAACAGAATGGAGAAAAACGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACGGCGATCTACTTCACTCGCTAGAAAATACAAAATGAAAAGCATAAAGAAAAAGGAAGAAGAAGATTGGAAGAGGAAAGAGTTTGAGGAACGAAGGCTGTGTGTGAGTGATTAGTTATATAGGGGAGGAGATTAGGGTTTGTCCACAACATTGTAGGAAAATACGAGAATGACC

mRNA sequence

ATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACGGCGATCTACTTCACTCGCTAGAAAATACAAAATGAAAAGCATAAAGAAAAAGGAAGAAGAAGATTGGAAGAGGAAAGAGTTTGAGGAACGAAGGCTGTGTGTGAGTGATTAG

Coding sequence (CDS)

ATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACGGCGATCTACTTCACTCGCTAGAAAATACAAAATGAAAAGCATAAAGAAAAAGGAAGAAGAAGATTGGAAGAGGAAAGAGTTTGAGGAACGAAGGCTGTGTGTGAGTGATTAG
Homology
[Close]
BLAST of CSPI05G07520 vs. TrEMBL
Match: A0A0A0KRH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G167180 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.5e-26
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKKKEEED 60
          MAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIK++EEED
Sbjct: 6  MAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKEEEEED 65

Query: 61 WKRKEFEE 69
          WKRKEFEE
Sbjct: 66 WKRKEFEE 73

[Close]
BLAST of CSPI05G07520 vs. NCBI nr
Match: gi|700195149|gb|KGN50326.1| (hypothetical protein Csa_5G167180 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 6.5e-26
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKKKEEED 60
          MAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIK++EEED
Sbjct: 6  MAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKEEEEED 65

Query: 61 WKRKEFEE 69
          WKRKEFEE
Sbjct: 66 WKRKEFEE 73

The following BLAST results are available for this feature:
BLAST of CSPI05G07520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G07520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRH6_CUCSA4.5e-2697.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G167180 PE=4 SV=1[more]
BLAST of CSPI05G07520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G07520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195149|gb|KGN50326.1|6.5e-2697.06hypothetical protein Csa_5G167180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G07520.1CSPI05G07520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G07520Csa5G167180Cucumber (Chinese Long) v2cpicuB240
CSPI05G07520MELO3C005460Melon (DHL92) v3.5.1cpimeB351
CSPI05G07520ClCG01G004760Watermelon (Charleston Gray)cpiwcgB379
CSPI05G07520MELO3C005460.2Melon (DHL92) v3.6.1cpimedB341
CSPI05G07520CsaV3_5G004950Cucumber (Chinese Long) v3cpicucB285
CSPI05G07520CsGy5G004980Cucumber (Gy14) v2cgybcpiB226
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G07520Melon (DHL92) v3.6.1cpimedB405
CSPI05G07520Cucumber (Gy14) v2cgybcpiB184
CSPI05G07520Silver-seed gourdcarcpiB0749
CSPI05G07520Silver-seed gourdcarcpiB1071
CSPI05G07520Cucumber (Chinese Long) v3cpicucB280
CSPI05G07520Watermelon (97103) v2cpiwmbB349
CSPI05G07520Watermelon (97103) v2cpiwmbB414
CSPI05G07520Wax gourdcpiwgoB440
CSPI05G07520Wax gourdcpiwgoB462
CSPI05G07520Wax gourdcpiwgoB488
CSPI05G07520Wild cucumber (PI 183967)cpicpiB156
CSPI05G07520Cucumber (Gy14) v1cgycpiB104
CSPI05G07520Cucumber (Gy14) v1cgycpiB181
CSPI05G07520Cucurbita maxima (Rimu)cmacpiB296
CSPI05G07520Cucurbita maxima (Rimu)cmacpiB615
CSPI05G07520Cucurbita maxima (Rimu)cmacpiB754
CSPI05G07520Cucurbita moschata (Rifu)cmocpiB287
CSPI05G07520Cucurbita moschata (Rifu)cmocpiB341
CSPI05G07520Cucurbita moschata (Rifu)cmocpiB607
CSPI05G07520Melon (DHL92) v3.5.1cpimeB407
CSPI05G07520Watermelon (Charleston Gray)cpiwcgB424
CSPI05G07520Watermelon (97103) v1cpiwmB402
CSPI05G07520Watermelon (97103) v1cpiwmB424
CSPI05G07520Cucurbita pepo (Zucchini)cpecpiB187
CSPI05G07520Cucurbita pepo (Zucchini)cpecpiB739
CSPI05G07520Bottle gourd (USVL1VR-Ls)cpilsiB322
CSPI05G07520Bottle gourd (USVL1VR-Ls)cpilsiB389