MELO3C005460.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C005460.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr09 : 21772128 .. 21773054 (-)
Sequence length927
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGTTTGGATAAAATCACAACTGATTGGACAAATAAACGAAGATTCATAAAAAGAAAATCCAACCGTAAAGCCTTAAATTAGTTATCTAATATTCATTGATCCAAAGTACAGAGACCAAAAACAATAAGGATGAAGAATGACAGCGTTTAAACCTGTATTTCATCAGTTCTTCAACCAGTAATCTGAATGAAATTCTATCAGCAAAGAAAATCGAGAACACAGCTAAAGCACACACAGGTTTGGAAATCAGTTGAAATTCTATGACTATTTTTTCTTTCGATAATTGTTTCACCAAAAGAAAGAAAAAAGAGAATCGAAATGAAAATTTTCATCAGTGAAAAAAAAAATATCAAGAACACAGTTGAATTAAAAATTGAAAACGAAATTACAGGAAATTGAAATATCATTAGCCAAGAATACGAGACGATGCTTTTTCTCCTTTCGATAATTCCATCATTAAATCCAAAAACAGAAAATCGGAACGAAATTAAAGCGCGTTGGAAAACAGATTGAAATCATCAGAAAACGAAGGACCAGAGCAAGAATAGAAAACAGAATCAGGCCTCAGACAGAGTGTTCTCAGTCATAAAATTATCAGACAATGTAGGCAAATCAAAATATCAATCATCACCGGCCTGATTCAGCAAGAAGAAAGAGAAATGAAAACAAGGAGAAAAGAGAAAAATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGATTGA

mRNA sequence

GAAGTTTGGATAAAATCACAACTGATTGGACAAATAAACGAAGATTCATAAAAAGAAAATCCAACCGTAAAGCCTTAAATTAGTTATCTAATATTCATTGATCCAAAGTACAGAGACCAAAAACAATAAGGATGAAGAATGACAGCGTTTAAACCTGTATTTCATCAGTTCTTCAACCAGTAATCTGAATGAAATTCTATCAGCAAAGAAAATCGAGAACACAGCTAAAGCACACACAGGTTTGGAAATCAGTTGAAATTCTATGACTATTTTTTCTTTCGATAATTGTTTCACCAAAAGAAAGAAAAAAGAGAATCGAAATGAAAATTTTCATCAGTGAAAAAAAAAATATCAAGAACACAGTTGAATTAAAAATTGAAAACGAAATTACAGGAAATTGAAATATCATTAGCCAAGAATACGAGACGATGCTTTTTCTCCTTTCGATAATTCCATCATTAAATCCAAAAACAGAAAATCGGAACGAAATTAAAGCGCGTTGGAAAACAGATTGAAATCATCAGAAAACGAAGGACCAGAGCAAGAATAGAAAACAGAATCAGGCCTCAGACAGAGTGTTCTCAGTCATAAAATTATCAGACAATGTAGGCAAATCAAAATATCAATCATCACCGGCCTGATTCAGCAAGAAGAAAGAGAAATGAAAACAAGGAGAAAAGAGAAAAATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGATTGA

Coding sequence (CDS)

ATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGA

Protein sequence

MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHKKEEKKVERGNSFGNEGAV
Homology
[Close]
BLAST of MELO3C005460.2.1 vs. NCBI nr
Match: KGN50326.1 (hypothetical protein Csa_5G167180 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHK 60
          MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESS+RS+SLARKYK+KS+ +
Sbjct: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKE 60

Query: 61 KEEKKVER 69
          +EE+  +R
Sbjct: 61 EEEEDWKR 68

[Close]
BLAST of MELO3C005460.2.1 vs. TrEMBL
Match: tr|A0A0A0KRH6|A0A0A0KRH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167180 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHK 60
          MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESS+RS+SLARKYK+KS+ +
Sbjct: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKE 60

Query: 61 KEEKKVER 69
          +EE+  +R
Sbjct: 61 EEEEDWKR 68

The following BLAST results are available for this feature:
BLAST of MELO3C005460.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50326.14.8e-2083.82hypothetical protein Csa_5G167180 [Cucumis sativus][more]
BLAST of MELO3C005460.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C005460.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C005460.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KRH6|A0A0A0KRH6_CUCSA3.2e-2083.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C005460.2MELO3C005460.2gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C005460.2.1.five_prime_UTR.1MELO3C005460.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C005460.2.1.CDS.1MELO3C005460.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C005460.2.1.three_prime_UTR.1MELO3C005460.2.1.three_prime_UTR.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C005460.2.1.exon.1MELO3C005460.2.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C005460.2.1MELO3C005460.2.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78