MELO3C005101.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005101.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Protein cofactor assembly of complex c subunit b ccb1, chloroplastic
Location	chr09 : 17140940 .. 17142278 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGTAAACGGCAACCACAAGATGCCGTAGAGAGTGATTTTTTCACTTCACAAGCAAACCAAAATCAATGCTTTTATCTTTTTCTTCTTTCTTGTGGCTGTGGCTGTGGCTGTGGCTGTGTTGCTGTGTTGCTTTCTCTTTTCTTTTCTTCTTCTTCTTCTTCTTCCTCAAAATCTCTCGCTCTTTTTTCTGTTTCACATTAATGGCGGCCAAGCTTCTACCATCGTCCCATTTCTATCCTCTCCCTTCCAACTCCTTCTCCGCCATAGACCTATCTCCACGCCCATGCTTCATCCGACCTCGCACTCATTTCAAGCCTCACAGATCGGTTACCGTCAAAGTCAATGCGGAGCCGCTCATCGCTCTCCAAGAACACAACAACTCCGCCTTCCTCCTCGCTGAGTCTGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCAAGGTTAGTTTATAAATTCATCAATTTGAATTACATCGCTCTGTTATCCTCCTCTGTTTGTGTTATGCGTAATTCGTTGAAAATCGAATCGACTAGGTTGTCAAGAAGACGTTCGTTAGCGAAGATGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGAAATAACTTTCAAGTCACTGGTAGAGGAGAAACCATAACGTAAGATTGGGAATTGGAAGAATTTTGTGATTGTTTTCCTTTTTTATTTTGTTGAGTTTAGTTGCGATTGATGGTTAACTTGTGAAGGTTTGAAGGAGCAATGGTTCCGAGTCGAGGACAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGACCATAACATTTCCAGATTTTGGCAACAATTGGTTTTGGCTCAGCAGCTTGAGTCCCCTGGCGTAAGTCTCACTCTCTACTTTCTCTTTCGTTCTTGGTTGTTCAAGTTCCACCATTAACGCATATTTTGATGGACTAAGCTCAATAGATGAAGTTGATTATTACCCACTCCAGAACTCATTCCTGACTTATCCAAAATACTTACATATAATATACCCTTTCAATCAAATTTCAAATTTGACTACTTTTTATCCTTGAGTAATTAGTCCAGTCTAAATGACAAAACCTTCGAACCTTAAACCGGTGTAGATTACTATTCAACGTCTATCATGACACGCTAAGACATAATAGTTAATTCATCTATCTTATATAAAGGATTATATTTTGCTATACTTAAAATATAACCAAATCTTAAATGGATGCATTGATTGACCCAAA

mRNA sequence

GGAGTAAACGGCAACCACAAGATGCCGTAGAGAGTGATTTTTTCACTTCACAAGCAAACCAAAATCAATGCTTTTATCTTTTTCTTCTTTCTTGTGGCTGTGGCTGTGGCTGTGGCTTTCTTCTTCTTCTTCTTCTTCCTCAAAATCTCTCGCTCTTTTTTCTGTTTCACATTAATGGCGGCCAAGCTTCTACCATCGTCCCATTTCTATCCTCTCCCTTCCAACTCCTTCTCCGCCATAGACCTATCTCCACGCCCATGCTTCATCCGACCTCGCACTCATTTCAAGCCTCACAGATCGGTTACCGTCAAAGTCAATGCGGAGCCGCTCATCGCTCTCCAAGAACACAACAACTCCGCCTTCCTCCTCGCTGAGTCTGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCAAGGTTGTCAAGAAGACGTTCGTTAGCGAAGATGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGAAATAACTTTCAAGTCACTGGTAGAGGAGAAACCATAACGTTTGAAGGAGCAATGGTTCCGAGTCGAGGACAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGACCATAACATTTCCAGATTTTGGCAACAATTGGTTTTGGCTCAGCAGCTTGAGTCCCCTGGCGTAAGTCTCACTCTCTACTTTCTCTTTCGTTCTTGGTTGTTCAAGTTCCACCATTAACGCATATTTTGATGGACTAAGCTCAATAGATGAAGTTGATTATTACCCACTCCAGAACTCATTCCTGACTTATCCAAAATACTTACATATAATATACCCTTTCAATCAAATTTCAAATTTGACTACTTTTTATCCTTGAGTAATTAGTCCAGTCTAAATGACAAAACCTTCGAACCTTAAACCGGTGTAGATTACTATTCAACGTCTATCATGACACGCTAAGACATAATAGTTAATTCATCTATCTTATATAAAGGATTATATTTTGCTATACTTAAAATATAACCAAATCTTAAATGGATGCATTGATTGACCCAAA

Coding sequence (CDS)

ATGGCGGCCAAGCTTCTACCATCGTCCCATTTCTATCCTCTCCCTTCCAACTCCTTCTCCGCCATAGACCTATCTCCACGCCCATGCTTCATCCGACCTCGCACTCATTTCAAGCCTCACAGATCGGTTACCGTCAAAGTCAATGCGGAGCCGCTCATCGCTCTCCAAGAACACAACAACTCCGCCTTCCTCCTCGCTGAGTCTGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCAAGGTTGTCAAGAAGACGTTCGTTAGCGAAGATGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGAAATAACTTTCAAGTCACTGGTAGAGGAGAAACCATAACGTTTGAAGGAGCAATGGTTCCGAGTCGAGGACAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGACCATAACATTTCCAGATTTTGGCAACAATTGGTTTTGGCTCAGCAGCTTGAGTCCCCTGGCGTAA

Protein sequence

MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDFGNNWFWLSSLSPLA

Homology

[Close]

BLAST of MELO3C005101.2 vs. NCBI nr
Match: XP_008465491.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucumis melo])

HSP 1 Score: 384.4 bits (986), Expect = 2.3e-103
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60
           MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120
           SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWLSSLSPLA 195
           GNNWFWLSSLSPLA
Sbjct: 181 GNNWFWLSSLSPLA 194

[Close]

BLAST of MELO3C005101.2 vs. NCBI nr
Match: XP_004143764.1 (PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus] >KGN51132.1 hypothetical protein Csa_5G464810 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 2.9e-98
Identity = 184/194 (94.85%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60
           MAAKLLPSSH YPLPSNSFSAIDLSPRPCF RPRTHFKPHRSVTV+V+AEPL+ALQ+HNN
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120
           SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED SKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTIT+PDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWLSSLSPLA 195
           GNNWFWLSSLSPLA
Sbjct: 181 GNNWFWLSSLSPLA 194

[Close]

BLAST of MELO3C005101.2 vs. NCBI nr
Match: XP_022938901.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 328.2 bits (840), Expect = 1.9e-86
Identity = 170/199 (85.43%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MAAKLLPSSHFYPLPS-----NSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60
           MA K LP SH YPLPS     +SFSA DL+PRPCF RPRTHF+P RSV V+VN EPL+A 
Sbjct: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60

Query: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120
           Q+H+NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120

Query: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDFGNNWFWLSSLSPLA 195
           TFPD GNNWFWLSSLSPLA
Sbjct: 181 TFPDIGNNWFWLSSLSPLA 198

[Close]

BLAST of MELO3C005101.2 vs. NCBI nr
Match: XP_023550037.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 2.5e-86
Identity = 170/199 (85.43%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MAAKLLPSSHFYPLPS-----NSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60
           MAAK+LP SH YPLPS     +SFSA DL+PRPCF  PRTHF+P RSV V+VN EPL+A 
Sbjct: 1   MAAKILP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSVAVRVNVEPLVAF 60

Query: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120
           Q+H+NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120

Query: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDFGNNWFWLSSLSPLA 195
           TFPD GNNWFWLSSLSPLA
Sbjct: 181 TFPDIGNNWFWLSSLSPLA 198

[Close]

BLAST of MELO3C005101.2 vs. NCBI nr
Match: XP_022992736.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 317.4 bits (812), Expect = 3.4e-83
Identity = 164/199 (82.41%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MAAKLLPSSHFYP-----LPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60
           MA K LP SH YP     LP +SFSA DL+PRPCF  PRTHF+P RS+ V+VN EPL+A 
Sbjct: 1   MAVKFLP-SHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAF 60

Query: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120
           Q+ +NS FLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120

Query: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNF+VT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 APNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDFGNNWFWLSSLSPLA 195
           TFPD GNNWFWLSSLSPLA
Sbjct: 181 TFPDIGNNWFWLSSLSPLA 198

[Close]

BLAST of MELO3C005101.2 vs. TAIR10
Match: AT3G26710.1 (cofactor assembly of complex C)

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-55
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 56  QEHNNSAFLLAESV-GYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESK 115
           +++ NS  L+ E+  GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV  D  K
Sbjct: 66  EQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFVVND-VK 125

Query: 116 KEPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLT 175
           KEP Q+AGEILSFFTR NF +T RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLT
Sbjct: 126 KEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLT 185

Query: 176 ITFPDFGNNWFWLSSLSPLA 195
           IT PDFGNNWF++  LSPLA
Sbjct: 186 ITVPDFGNNWFFIILLSPLA 204

[Close]

BLAST of MELO3C005101.2 vs. Swiss-Prot
Match: sp|Q9LSE4|CCB1_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB1 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.6e-54
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 56  QEHNNSAFLLAESV-GYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESK 115
           +++ NS  L+ E+  GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV  D  K
Sbjct: 66  EQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFVVND-VK 125

Query: 116 KEPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLT 175
           KEP Q+AGEILSFFTR NF +T RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLT
Sbjct: 126 KEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLT 185

Query: 176 ITFPDFGNNWFWLSSLSPLA 195
           IT PDFGNNWF++  LSPLA
Sbjct: 186 ITVPDFGNNWFFIILLSPLA 204

[Close]

BLAST of MELO3C005101.2 vs. TrEMBL
Match: tr|A0A1S3CPE0|A0A1S3CPE0_CUCME (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503108 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.5e-103
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60
           MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120
           SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWLSSLSPLA 195
           GNNWFWLSSLSPLA
Sbjct: 181 GNNWFWLSSLSPLA 194

[Close]

BLAST of MELO3C005101.2 vs. TrEMBL
Match: tr|A0A0A0KRU8|A0A0A0KRU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.9e-98
Identity = 184/194 (94.85%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60
           MAAKLLPSSH YPLPSNSFSAIDLSPRPCF RPRTHFKPHRSVTV+V+AEPL+ALQ+HNN
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120
           SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED SKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTIT+PDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWLSSLSPLA 195
           GNNWFWLSSLSPLA
Sbjct: 181 GNNWFWLSSLSPLA 194

[Close]

BLAST of MELO3C005101.2 vs. TrEMBL
Match: tr|A0A1R3JWS4|A0A1R3JWS4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13379 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.6e-60
Identity = 133/199 (66.83%), Postives = 149/199 (74.87%), Query Frame = 0


Query: 9   SHFYPLPS-NSFSAIDLSPR-PCFIRPRTHFKPHRSVTVKVNAEPLI----ALQEH---- 68
           S F  LPS N+ S   L  R P   R  TH +P R +  +++ +  I    A+ +H    
Sbjct: 14  SSFSSLPSRNTTSHFHLHQRHPWLKRAPTHSRPERQMLARLSLQETILSSSAVADHLQHY 73

Query: 69  ---NNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 128
               +S FLLAES GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+VKKTF+ E E KK
Sbjct: 74  HQNPDSLFLLAESTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIGEGEEKK 133

Query: 129 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 188
            PNQ+AGEILSFFTRNNF VT RGETITFEG M PSRGQAALLTFCTCISLASV LVLTI
Sbjct: 134 APNQVAGEILSFFTRNNFAVTDRGETITFEGMMTPSRGQAALLTFCTCISLASVALVLTI 193

Query: 189 TFPDFGNNWFWLSSLSPLA 195
           T PD GNNWFWL++LSPLA
Sbjct: 194 TLPDVGNNWFWLTALSPLA 212

[Close]

BLAST of MELO3C005101.2 vs. TrEMBL
Match: tr|A0A2C9V0T8|A0A2C9V0T8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G076200 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 8.6e-59
Identity = 117/138 (84.78%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 57  EHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKE 116
           ++ +S FLLAESVGYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTF+ E E KK 
Sbjct: 80  QNQDSMFLLAESVGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFIGEGEGKKA 139

Query: 117 PNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTIT 176
           PNQ+AGEILSFFTRNNF VT RGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 140 PNQVAGEILSFFTRNNFVVTDRGETITFEGMMVPSRGQAALLTFCTCISLASVALVLTIT 199

Query: 177 FPDFGNNWFWLSSLSPLA 195
           FPDFGNNWFW++ LSPLA
Sbjct: 200 FPDFGNNWFWITILSPLA 217

[Close]

BLAST of MELO3C005101.2 vs. TrEMBL
Match: tr|A0A067L3R0|A0A067L3R0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26881 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.1e-58
Identity = 119/155 (76.77%), Postives = 130/155 (83.87%), Query Frame = 0


Query: 40  HRSVTVKVNAEPLIALQEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVK 99
           H S +     E L    ++ NS FL+AES GYS+ASYYTSLGLFVISVPGLWSLIKRSVK
Sbjct: 59  HVSSSSSALMEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVK 118

Query: 100 SKVVKKTFVSEDESKKEPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLT 159
           SK+V+KTF+ E E KK PNQ+AGEILSFFTRNNF V  RGETITFEG MVPSRGQAALLT
Sbjct: 119 SKIVQKTFIGEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAALLT 178

Query: 160 FCTCISLASVGLVLTITFPDFGNNWFWLSSLSPLA 195
           FCTCISLASV LVLTITFPDFGNNWFW++ LSPLA
Sbjct: 179 FCTCISLASVALVLTITFPDFGNNWFWITILSPLA 213

The following BLAST results are available for this feature:

BLAST of MELO3C005101.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465491.1	2.3e-103	100.00	PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic ...	[more]
XP_004143764.1	2.9e-98	94.85	PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus] >KGN51132.1 hy...	[more]
XP_022938901.1	1.9e-86	85.43	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_023550037.1	2.5e-86	85.43	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022992736.1	3.4e-83	82.41	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]

BLAST of MELO3C005101.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26710.1	3.6e-55	78.57	cofactor assembly of complex C	[more]

BLAST of MELO3C005101.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LSE4\|CCB1_ARATH	6.6e-54	78.57	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of MELO3C005101.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPE0\|A0A1S3CPE0_CUCME	1.5e-103	100.00	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis ...	[more]
tr\|A0A0A0KRU8\|A0A0A0KRU8_CUCSA	1.9e-98	94.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1	[more]
tr\|A0A1R3JWS4\|A0A1R3JWS4_9ROSI	4.6e-60	66.83	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13379 PE=4 SV=1	[more]
tr\|A0A2C9V0T8\|A0A2C9V0T8_MANES	8.6e-59	84.78	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G076200 PE=4 SV=...	[more]
tr\|A0A067L3R0\|A0A067L3R0_JATCU	1.1e-58	76.77	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26881 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021919	CCB1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0009657	plastid organization
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0043623	cellular protein complex assembly
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005101.2.1	MELO3C005101.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	CCB1	coord: 75..194 e-value: 2.8E-38 score: 130.8
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 39..194

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005101.2	Csa5G464810	Cucumber (Chinese Long) v2	cumedB341
MELO3C005101.2	CSPI05G15890	Wild cucumber (PI 183967)	cpimedB343
MELO3C005101.2	Cucsa.033620	Cucumber (Gy14) v1	cgymedB007
MELO3C005101.2	CmaCh15G008100	Cucurbita maxima (Rimu)	cmamedB286
MELO3C005101.2	CmoCh15G008350	Cucurbita moschata (Rifu)	cmomedB272
MELO3C005101.2	Lsi09G008290	Bottle gourd (USVL1VR-Ls)	lsimedB014
MELO3C005101.2	Cp4.1LG13g05840	Cucurbita pepo (Zucchini)	cpemedB184
MELO3C005101.2	CsGy5G015640	Cucumber (Gy14) v2	cgybmedB303
MELO3C005101.2	Cla005927	Watermelon (97103) v1	medwmB028
MELO3C005101.2	ClCG01G007850	Watermelon (Charleston Gray)	medwcgB018
MELO3C005101.2	Cla97C01G008190	Watermelon (97103) v2	medwmbB008
MELO3C005101.2	Carg01394	Silver-seed gourd	carmedB0832
MELO3C005101.2	CsaV3_5G024930	Cucumber (Chinese Long) v3	cucmedB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005101.2	Cucurbita maxima (Rimu)	cmamedB721
MELO3C005101.2	Cucurbita moschata (Rifu)	cmomedB714
MELO3C005101.2	Cucurbita pepo (Zucchini)	cpemedB419
MELO3C005101.2	Silver-seed gourd	carmedB0487
MELO3C005101.2	Wax gourd	medwgoB003