CmoCh15G008350 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G008350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cofactor assembly of complex protein C, putative
Location	Cmo_Chr15 : 4236975 .. 4238910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACGTTCACAAGCAAAGCTTTTATCCTTTTCTTCTTGCTTGTGGCTGTGGCTCTCTCTTCTTCTTCTTCTTCTTCATCAAACTCACTCCCCCTCCTTTCTCTGGTCGACGTTAATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTCCTTCCCCATCTCTCCCTCCCAGCTCCTTTTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCAGACCTCGCACTCATTTCAGGCCGCAGAGATCGGTAGCGGTAAGAGTCAATGTGGAGCCGCTTGTCGCTTTTCAAGATCACCACAACTCCGCCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTTATCTCCGTGCCTGGCCTGTGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTTGATAAATTCACCTCCGGTGCAATTCGAATTACATCGTTCTGTTATTTCTCTGTTTATGTTGTGTATTGATTGAATCGCGTCGATTAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCCAAGTCACTGATAGAGGCGAAACCATTACGTAATGCGATTTTCTTTTGGAATTTATTACAATTTTGTGATTCATTTTTTTCTGAGTGTTAAGTTCAATTGCATTGAATTAACTTCTGGATGTTCGATCGATGTTTAATTGTGAAGGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCGTAAGTGCCACTGAACTTCTCGCCTATATATTAACACCGACTCATGGCATGCATGCTTGTTTGATAGTCATTTTGAAATTACTAGAATCTTGATCATTCAAAACCAATGTTTCAAGAAGTTTGAATGATTAATGACATATTTGAGATCGATTTTACAAAAGCCATTTTAATCCTTTCAAACACGTCCTCTTTGAATCATGATCTCCTTCGCTACCCGAATATTCAACGAATAAATATCCTATATCCATTGAGATTTTCTTAGATCTTTGATTTTAATTTAACCTTCATACCTTTGGAAAAGAAAGAAATTATGGTGTCAGTTTGGATCAAGATTTTCTGAGATCTTTGATTTTAGTTTAGGCTTCATACCTTCCGAAAATCATATGATCTTTTAAGCTTCCAAATTTTGTTCTTCGTTCTCAGTTACCAATTATGGGTTTCATCTCCTACACAAATCCAAAAGCAAATTTTTTAAAATATTTTTTTAATTTTCAAAATATGACTTAGTAAATTGCTACTACCCTATTTCATCGACTAAGTGTTACCCCTTTTCTTTAATCTAATAGATGCATATATAATTGAACTCAATAATATACAAGTAAGAAATTCAGTCTATCATAAACATGCATAAATTCACGAAATTTTAATTAACCTTGTATAAAATAATATCATAAACTGGTCTCTCAAATTCAAATTCTATCTATGATCTTAAAATTTGAGATATATGATAGAACCTTAGAATCTAACCTGAGGCTGTTTGAAAACTGCAGAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAAGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGATTATTATCAGTTTCATCTTCTTCTTTTTTTTTTTTTTCTTTTTTTTTTTCTTTACCATAGTTG

mRNA sequence

TGACGTTCACAAGCAAAGCTTTTATCCTTTTCTTCTTGCTTGTGGCTGTGGCTCTCTCTTCTTCTTCTTCTTCTTCATCAAACTCACTCCCCCTCCTTTCTCTGGTCGACGTTAATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTCCTTCCCCATCTCTCCCTCCCAGCTCCTTTTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCAGACCTCGCACTCATTTCAGGCCGCAGAGATCGGTAGCGGTAAGAGTCAATGTGGAGCCGCTTGTCGCTTTTCAAGATCACCACAACTCCGCCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTTATCTCCGTGCCTGGCCTGTGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCCAAGTCACTGATAGAGGCGAAACCATTACGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAAGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGATTATTATCAGTTTCATCTTCTTCTTTTTTTTTTTTTTCTTTTTTTTTTTCTTTACCATAGTTG

Coding sequence (CDS)

ATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTCCTTCCCCATCTCTCCCTCCCAGCTCCTTTTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCAGACCTCGCACTCATTTCAGGCCGCAGAGATCGGTAGCGGTAAGAGTCAATGTGGAGCCGCTTGTCGCTTTTCAAGATCACCACAACTCCGCCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTTATCTCCGTGCCTGGCCTGTGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCCAAGTCACTGATAGAGGCGAAACCATTACGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAAGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGA

Homology

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BLAST of CmoCh15G008350 vs. Swiss-Prot
Match: CCB1_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana GN=CCB1 PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.3e-81
Identity = 156/202 (77.23%), Postives = 173/202 (85.64%), Query Frame = 1


Query: 59  FQDHHNSAFLLAESVG-YSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGES 118
           ++ + NS  L+ E+ G YS ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + 
Sbjct: 65  WEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFV-VNDV 124

Query: 119 KKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL 178
           KK P Q AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLVL
Sbjct: 125 KKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVL 184

Query: 179 TITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVE 238
           TIT PD GNNWF++  LSPLAG YYW KASRKEEIKVKM+VG  G L EI+VQGDD QVE
Sbjct: 185 TITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVE 244

Query: 239 QMRKELQLSEKGMVYVKGIFEQ 260
           +MRKELQL+EKGMVYVKG+FE+
Sbjct: 245 EMRKELQLNEKGMVYVKGLFER 265

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BLAST of CmoCh15G008350 vs. TrEMBL
Match: A0A0A0KRU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 4.0e-122
Identity = 229/260 (88.08%), Postives = 239/260 (91.92%), Query Frame = 1


Query: 1   MAVKFLPS-HLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60
           MA K LPS HLYPLPS     +SFSA DL+PRPCF RPRTHF+P RSV VRV+ EPLVA 
Sbjct: 1   MAAKLLPSSHLYPLPS-----NSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVAL 60

Query: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           QDH+NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE  SKK
Sbjct: 61  QDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKK 120

Query: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240
           T+PD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEI+VQGDDQQ++QM
Sbjct: 181 TYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

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BLAST of CmoCh15G008350 vs. TrEMBL
Match: D7SVG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01020 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.3e-92
Identity = 194/270 (71.85%), Postives = 212/270 (78.52%), Query Frame = 1


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLT--PRPCFGRPRTHFRPQRSVAVRVNVEPLVA 60
           MA K L SH +PL S S P S F   D T   +P   R  T  RP+R V V+V++   ++
Sbjct: 1   MAAKLL-SHSHPLSSLS-PLSKFRTSDFTLQHQPWLRRTPTPTRPKRLV-VQVSLHDPIS 60

Query: 61  FQD---HH-------NSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVK 120
                 HH        S F LAES GYS ASYYTSLGLFVISVPGLWSLIKRSVKSK+VK
Sbjct: 61  SSTALLHHLHTHQTPYSLFELAESTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVK 120

Query: 121 KTFVSEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCI 180
           KTF+ EGE K  PN  AGEILSFF+RNNF V+DRGETITFEG MVPSRGQAALLTFCTCI
Sbjct: 121 KTFIGEGEGKNKPNHMAGEILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCI 180

Query: 181 SLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEII 240
           SLASVGLVLTITFPD+GNNWFWL+ LSPLAGAYYW +ASRKE+IKVKMIV +DG+L EII
Sbjct: 181 SLASVGLVLTITFPDVGNNWFWLTILSPLAGAYYWKRASRKEQIKVKMIVADDGTLSEII 240

Query: 241 VQGDDQQVEQMRKELQLSEKGMVYVKGIFE 259
           VQGDDQQVEQMRKELQLSEKGMVYVKGIFE
Sbjct: 241 VQGDDQQVEQMRKELQLSEKGMVYVKGIFE 267

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BLAST of CmoCh15G008350 vs. TrEMBL
Match: A0A061ED97_THECC (Cofactor assembly of complex C isoform 1 OS=Theobroma cacao GN=TCM_017354 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.1e-91
Identity = 186/276 (67.39%), Postives = 216/276 (78.26%), Query Frame = 1


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTP----RPCFGR-PRTHFRPQRSVAVRVNVEP 60
           MA + +  H   L + SLP S FS+ + +     +P  GR P TH RP R +  R++++ 
Sbjct: 1   MATRIISPHPQALSALSLP-SKFSSRNGSHLHQHQPWLGRAPPTHLRPGRQLLARLSLQQ 60

Query: 61  LV-----AFQDH-------HNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVK 120
            +     A  DH        +S +LLAES GYS ASYYTSLGLFVISVPGLWSLIKRSVK
Sbjct: 61  TLLSSSSALSDHLQNYHQNPDSMYLLAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVK 120

Query: 121 SKVVKKTFVSEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLT 180
           SK+V+KTF+ EGE KKAPNQ AGEILSFFTRNNF VTDRGETITFEG MVPSRGQAALLT
Sbjct: 121 SKIVQKTFIGEGEEKKAPNQVAGEILSFFTRNNFVVTDRGETITFEGMMVPSRGQAALLT 180

Query: 181 FCTCISLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGS 240
           FCTCISLASV LVLTIT PD+GNNWFW++ LSP AGAYYW +ASRKE+IKVK++V  DG+
Sbjct: 181 FCTCISLASVALVLTITVPDVGNNWFWITVLSPSAGAYYWKRASRKEQIKVKVLVANDGT 240

Query: 241 LGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 260
           L EI+VQGDDQQV+QMRKEL+LSEKGMVYVKGIFE+
Sbjct: 241 LSEIVVQGDDQQVDQMRKELKLSEKGMVYVKGIFER 275

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BLAST of CmoCh15G008350 vs. TrEMBL
Match: A0A067L3R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26881 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.7e-91
Identity = 172/207 (83.09%), Postives = 186/207 (89.86%), Query Frame = 1


Query: 53  VEPLVAFQDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV 112
           +E L  +  + NS FL+AES GYS ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTF+
Sbjct: 68  MEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFI 127

Query: 113 SEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLAS 172
            EGE KKAPNQ AGEILSFFTRNNF V DRGETITFEG MVPSRGQAALLTFCTCISLAS
Sbjct: 128 GEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAALLTFCTCISLAS 187

Query: 173 VGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGD 232
           V LVLTITFPD GNNWFW++ LSPLAGAYYW +ASRKE+IKVKMIV EDG+L EIIVQGD
Sbjct: 188 VALVLTITFPDFGNNWFWITILSPLAGAYYWKQASRKEQIKVKMIVAEDGTLSEIIVQGD 247

Query: 233 DQQVEQMRKELQLSEKGMVYVKGIFEQ 260
           DQQVE+MRKELQLSEKGMVYVKGIFE+
Sbjct: 248 DQQVEEMRKELQLSEKGMVYVKGIFER 274

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BLAST of CmoCh15G008350 vs. TrEMBL
Match: B9RGW8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1445030 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.4e-90
Identity = 180/257 (70.04%), Postives = 204/257 (79.38%), Query Frame = 1


Query: 10  LYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEP-------LVAFQDH 69
           L P P     PS  S       P  G+ RT   P R V   V+++        ++  Q H
Sbjct: 10  LSPNPLSISLPSKLSCKKHHLWPGPGQARTPTTPNRQVVRVVSLQEHVLSSSAILVEQLH 69

Query: 70  HNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKAPN 129
           H+S F +AES+GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTF+ EGE +KAPN
Sbjct: 70  HDSMFSVAESMGYSSASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFIGEGEGRKAPN 129

Query: 130 QFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFP 189
             AGEILSFFTRNNF VTDRGETITFEG M+PSRGQAALLTFCTCISLASV LVLTIT P
Sbjct: 130 HVAGEILSFFTRNNFVVTDRGETITFEGMMIPSRGQAALLTFCTCISLASVALVLTITLP 189

Query: 190 DIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMRKE 249
           D GNNWFW++ LSPLAGAYYW +ASRKE+IKVKM+V +DG+L EI+VQGDDQQVEQMRKE
Sbjct: 190 DFGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVSDDGTLSEIVVQGDDQQVEQMRKE 249

Query: 250 LQLSEKGMVYVKGIFEQ 260
           LQLSEKGMVYVKGIFE+
Sbjct: 250 LQLSEKGMVYVKGIFER 266

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BLAST of CmoCh15G008350 vs. TAIR10
Match: AT3G26710.1 (AT3G26710.1 cofactor assembly of complex C)

HSP 1 Score: 301.6 bits (771), Expect = 4.7e-82
Identity = 156/202 (77.23%), Postives = 173/202 (85.64%), Query Frame = 1


Query: 59  FQDHHNSAFLLAESVG-YSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGES 118
           ++ + NS  L+ E+ G YS ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + 
Sbjct: 65  WEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFV-VNDV 124

Query: 119 KKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL 178
           KK P Q AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLVL
Sbjct: 125 KKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVL 184

Query: 179 TITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVE 238
           TIT PD GNNWF++  LSPLAG YYW KASRKEEIKVKM+VG  G L EI+VQGDD QVE
Sbjct: 185 TITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVE 244

Query: 239 QMRKELQLSEKGMVYVKGIFEQ 260
           +MRKELQL+EKGMVYVKG+FE+
Sbjct: 245 EMRKELQLNEKGMVYVKGLFER 265

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BLAST of CmoCh15G008350 vs. NCBI nr
Match: gi|449452032|ref|XP_004143764.1| (PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 5.7e-122
Identity = 229/260 (88.08%), Postives = 239/260 (91.92%), Query Frame = 1


Query: 1   MAVKFLPS-HLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60
           MA K LPS HLYPLPS     +SFSA DL+PRPCF RPRTHF+P RSV VRV+ EPLVA 
Sbjct: 1   MAAKLLPSSHLYPLPS-----NSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVAL 60

Query: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           QDH+NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE  SKK
Sbjct: 61  QDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKK 120

Query: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240
           T+PD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEI+VQGDDQQ++QM
Sbjct: 181 TYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

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BLAST of CmoCh15G008350 vs. NCBI nr
Match: gi|659072406|ref|XP_008465491.1| (PREDICTED: uncharacterized protein LOC103503108 [Cucumis melo])

HSP 1 Score: 441.0 bits (1133), Expect = 1.4e-120
Identity = 227/260 (87.31%), Postives = 237/260 (91.15%), Query Frame = 1


Query: 1   MAVKFLPS-HLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60
           MA K LPS H YPLPS     +SFSA DL+PRPCF RPRTHF+P RSV V+VN EPL+A 
Sbjct: 1   MAAKLLPSSHFYPLPS-----NSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60

Query: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           Q+H+NSAFLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120

Query: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240
           TFPD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQ++QM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of CmoCh15G008350 vs. NCBI nr
Match: gi|225451623|ref|XP_002276522.1| (PREDICTED: uncharacterized protein LOC100256625 [Vitis vinifera])

HSP 1 Score: 346.3 bits (887), Expect = 4.7e-92
Identity = 194/270 (71.85%), Postives = 212/270 (78.52%), Query Frame = 1


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLT--PRPCFGRPRTHFRPQRSVAVRVNVEPLVA 60
           MA K L SH +PL S S P S F   D T   +P   R  T  RP+R V V+V++   ++
Sbjct: 1   MAAKLL-SHSHPLSSLS-PLSKFRTSDFTLQHQPWLRRTPTPTRPKRLV-VQVSLHDPIS 60

Query: 61  FQD---HH-------NSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVK 120
                 HH        S F LAES GYS ASYYTSLGLFVISVPGLWSLIKRSVKSK+VK
Sbjct: 61  SSTALLHHLHTHQTPYSLFELAESTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVK 120

Query: 121 KTFVSEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCI 180
           KTF+ EGE K  PN  AGEILSFF+RNNF V+DRGETITFEG MVPSRGQAALLTFCTCI
Sbjct: 121 KTFIGEGEGKNKPNHMAGEILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCI 180

Query: 181 SLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEII 240
           SLASVGLVLTITFPD+GNNWFWL+ LSPLAGAYYW +ASRKE+IKVKMIV +DG+L EII
Sbjct: 181 SLASVGLVLTITFPDVGNNWFWLTILSPLAGAYYWKRASRKEQIKVKMIVADDGTLSEII 240

Query: 241 VQGDDQQVEQMRKELQLSEKGMVYVKGIFE 259
           VQGDDQQVEQMRKELQLSEKGMVYVKGIFE
Sbjct: 241 VQGDDQQVEQMRKELQLSEKGMVYVKGIFE 267

[Close]

BLAST of CmoCh15G008350 vs. NCBI nr
Match: gi|590647922|ref|XP_007032034.1| (Cofactor assembly of complex C isoform 1 [Theobroma cacao])

HSP 1 Score: 343.6 bits (880), Expect = 3.0e-91
Identity = 186/276 (67.39%), Postives = 216/276 (78.26%), Query Frame = 1


Query: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTP----RPCFGR-PRTHFRPQRSVAVRVNVEP 60
           MA + +  H   L + SLP S FS+ + +     +P  GR P TH RP R +  R++++ 
Sbjct: 1   MATRIISPHPQALSALSLP-SKFSSRNGSHLHQHQPWLGRAPPTHLRPGRQLLARLSLQQ 60

Query: 61  LV-----AFQDH-------HNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVK 120
            +     A  DH        +S +LLAES GYS ASYYTSLGLFVISVPGLWSLIKRSVK
Sbjct: 61  TLLSSSSALSDHLQNYHQNPDSMYLLAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVK 120

Query: 121 SKVVKKTFVSEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLT 180
           SK+V+KTF+ EGE KKAPNQ AGEILSFFTRNNF VTDRGETITFEG MVPSRGQAALLT
Sbjct: 121 SKIVQKTFIGEGEEKKAPNQVAGEILSFFTRNNFVVTDRGETITFEGMMVPSRGQAALLT 180

Query: 181 FCTCISLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGS 240
           FCTCISLASV LVLTIT PD+GNNWFW++ LSP AGAYYW +ASRKE+IKVK++V  DG+
Sbjct: 181 FCTCISLASVALVLTITVPDVGNNWFWITVLSPSAGAYYWKRASRKEQIKVKVLVANDGT 240

Query: 241 LGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 260
           L EI+VQGDDQQV+QMRKEL+LSEKGMVYVKGIFE+
Sbjct: 241 LSEIVVQGDDQQVDQMRKELKLSEKGMVYVKGIFER 275

[Close]

BLAST of CmoCh15G008350 vs. NCBI nr
Match: gi|802564618|ref|XP_012067360.1| (PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas])

HSP 1 Score: 342.4 bits (877), Expect = 6.8e-91
Identity = 172/207 (83.09%), Postives = 186/207 (89.86%), Query Frame = 1


Query: 53  VEPLVAFQDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV 112
           +E L  +  + NS FL+AES GYS ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTF+
Sbjct: 68  MEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFI 127

Query: 113 SEGESKKAPNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLAS 172
            EGE KKAPNQ AGEILSFFTRNNF V DRGETITFEG MVPSRGQAALLTFCTCISLAS
Sbjct: 128 GEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAALLTFCTCISLAS 187

Query: 173 VGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGD 232
           V LVLTITFPD GNNWFW++ LSPLAGAYYW +ASRKE+IKVKMIV EDG+L EIIVQGD
Sbjct: 188 VALVLTITFPDFGNNWFWITILSPLAGAYYWKQASRKEQIKVKMIVAEDGTLSEIIVQGD 247

Query: 233 DQQVEQMRKELQLSEKGMVYVKGIFEQ 260
           DQQVE+MRKELQLSEKGMVYVKGIFE+
Sbjct: 248 DQQVEEMRKELQLSEKGMVYVKGIFER 274

The following BLAST results are available for this feature:

BLAST of CmoCh15G008350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB1_ARATH	8.3e-81	77.23	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of CmoCh15G008350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRU8_CUCSA	4.0e-122	88.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G464810 PE=4 SV=1	[more]
D7SVG9_VITVI	3.3e-92	71.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01020 PE=4 SV=...	[more]
A0A061ED97_THECC	2.1e-91	67.39	Cofactor assembly of complex C isoform 1 OS=Theobroma cacao GN=TCM_017354 PE=4 S...	[more]
A0A067L3R0_JATCU	4.7e-91	83.09	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26881 PE=4 SV=1	[more]
B9RGW8_RICCO	1.4e-90	70.04	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1445030 PE=4 SV=1	[more]

BLAST of CmoCh15G008350 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26710.1	4.7e-82	77.23	cofactor assembly of complex C	[more]

BLAST of CmoCh15G008350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452032\|ref\|XP_004143764.1\|	5.7e-122	88.08	PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus]	[more]
gi\|659072406\|ref\|XP_008465491.1\|	1.4e-120	87.31	PREDICTED: uncharacterized protein LOC103503108 [Cucumis melo]	[more]
gi\|225451623\|ref\|XP_002276522.1\|	4.7e-92	71.85	PREDICTED: uncharacterized protein LOC100256625 [Vitis vinifera]	[more]
gi\|590647922\|ref\|XP_007032034.1\|	3.0e-91	67.39	Cofactor assembly of complex C isoform 1 [Theobroma cacao]	[more]
gi\|802564618\|ref\|XP_012067360.1\|	6.8e-91	83.09	PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021919	CCB1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008350.1	CmoCh15G008350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	DUF3529	coord: 79..245 score: 2.6
None	No IPR available	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 42..259 score: 2.7E
None	No IPR available	PANTHER	PTHR35302:SF1	SUBFAMILY NOT NAMED	coord: 42..259 score: 2.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G008350	Cucsa.033620	Cucumber (Gy14) v1	cgycmoB0014
CmoCh15G008350	CmaCh15G008100	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G008350	Cla005927	Watermelon (97103) v1	cmowmB268
CmoCh15G008350	Csa5G464810	Cucumber (Chinese Long) v2	cmocuB291
CmoCh15G008350	MELO3C005101	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G008350	ClCG01G007850	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G008350	CSPI05G15890	Wild cucumber (PI 183967)	cmocpiB300
CmoCh15G008350	Lsi09G008290	Bottle gourd (USVL1VR-Ls)	cmolsiB256
CmoCh15G008350	Cp4.1LG13g05840	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G008350	MELO3C005101.2	Melon (DHL92) v3.6.1	cmomedB272
CmoCh15G008350	CsaV3_5G024930	Cucumber (Chinese Long) v3	cmocucB0352
CmoCh15G008350	Cla97C01G008190	Watermelon (97103) v2	cmowmbB271
CmoCh15G008350	Bhi12G000948	Wax gourd	cmowgoB0360
CmoCh15G008350	CsGy5G015640	Cucumber (Gy14) v2	cgybcmoB588
CmoCh15G008350	Carg01394	Silver-seed gourd	carcmoB1118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G008350	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G008350	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G008350	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G008350	Silver-seed gourd	carcmoB0647