Csa5G464810 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G464810
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Genome sequencing data, contig C300; contains IPR021919 (Protein of unknown function DUF3529)
Location	Chr5 : 16270413 .. 16273216 (-)

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Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCTTCTTCTTCTTCCTCAAAATCTCTCTCTCTCTTCTCTGTTCCACATTAATGGCGGCCAAGCTTCTACCATCATCTCATCTCTATCCTCTCCCTTCCAACTCCTTCTCCGCCATAGACCTATCTCCACGCCCATGCTTCGCCCGACCTCGCACTCATTTCAAGCCTCACAGATCGGTTACCGTCAGAGTCAGTGCGGAGCCGCTCGTCGCTCTCCAAGACCACAACAACTCCGCCTTCCTCCTCGCTGAGTCTGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCAAGGTTAGTTTATAAATTCATCAATTCCAATCACCATCGCTCTGTTATTCTCCTCTGTTTGTGTTAGGCGTAATTCGTTGAAAATCGAATCGATAAGGTTGTGAAGAAGACGTTCGTTAGCGAAGATGGGTCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGGAATAATTTTCAAGTCACTGATAGAGGTGAAACCATAACGTAAGATTGGGAATTGGAAAAATTTTGTGATTCTTTTCCTTGTTCTTTTTTTTCTTTCTTTTTTTTTTTCTTTTTTGAGTTGAATTAGTTGCGATTGATGGTTAAATTGTCAAGGTTTGAAGGAACGATGGTTCCGAGTCGAGGACAAGCGGCATTATTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGACCATAACATATCCAGATTTTGGCAACAATTGGTTTTGGCTGAGCAGCTTGAGTCCCCTGGCGTAAGTCTCACTCTCTACTTTCTCTTTCCTTCTTCGTTCTTCAAGTTTCACCATTAACGCATATTTTGATGGACTAAGCTCAATAGATGAAGTTGGTTATCACCCACTCCAAAACGCATTCCTCACTTGATACTCTTATAACTAAATTTCAAATTTGATTTCTTTTATCTTTTACAATCATTTTCCTAACCATCAACCAAATCTTAAACGGATGAAATATTTTTCAATAATAAAAGATTGAAAATATTTAAAATGTAGCAAAATTTTACTTTGTAATCAACCGAAATAAACATCTATCAATATAATACAAAATTTTGTTATACTGATAAATAAGTTACTTATTTTACTATATTTAAAAATAATCGTATATGAAAATTATAAGATTAAGTAGGTGTGAGTAATGGTCAGAATCAGTTTACCTGACAAACAAGTATTTAACCGACTATGGTCGGTTTAGTAAATGTTCAAACCAACCCAACCATAAAGAAATACAAATCGACTAAGTTTATATCCATTTAAGCTTTTAGACACTTGAAGTCCCTTCTTTTTTCCAACCCACCACCTTTGATTCGGTCGGTTTTTGTTGGTCAACTCAGTTTTTTAGTTTATTGTGCTTATCACTAAGATTAAAATAGTTTGATAATATTAATTCTTAAAAGTTAAGCGTATATATTTATTTATACGGGTGGAATTTGAAAAATATCTATATAGTGTTATTTTTTAAAAAAATTAAATAGGAGTTTTAGTAACTTTTTAAAATAAAAACTTCAGGAGAAAACAGTATAAATTTATAGAAAACTAGAAACAAAATCATAAATTTCAGAATTTATGTACGCCTCTTTAGTTAAAAAAGAAATTTCTAGGCCAGTCTTCCTGACGTAATAATTGATTTTGTTTCTCACTTGCTACTATTTGTTCATGTATCTTTCTTAGAACTAAATTAACGATCCTGCTTATTTTGCTATTTTTGGAAACTAAATTAATAATAACCTCAACAACCGTTTATTCCAATATCTTTTCTCAAAGATGCAAATATTATTCCTTAGCTATTTTACGAAAATCATGCTGCAATTTCAGAACAAAAATTGGGACTAATCACATTGTTTACTTTAGGTTATTCTCAAGTCCCAATTGATTCCATCTCAAAATTAGTTTTGAAATTTATATTGAAAGACCAAAGATTATATTGAAAGTTATAGGTACTTTTAAATAAAGAGCAAATTCGCTTCTAATTTAACTTTTAGTTCTATTTACAAAATAGCATTAGATTATAACCTTAGAAGATACTAACTTTAATCTTTTTATAACAACACCTTCATAATATCATTAACAGTACTTCAGATTCTTTGTTTTTAATATTAAAAAAGGATTCCAAAAGTGTAAAGTAAAAAAAAAAACAAAAGAAACAATATAGAGATATGAATAAATAAGCTTCAATTACAAGAACGCCCAAGAGAACCAAATAGTAACAACCATTAAAAAAAGGTTTAGTTTCGAAAATAAAATTGAAGATTGAGATGATTAACAAGAGAATACCATAAAAAAAGCTAACCCCAAACTCTTTAAAAACTGCAGTGGAGCATATTACTGGGTAAAAGCATCAAGAAAGGAAGAAATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGTTGGGAGAGATTGTTGTTCAAGGAGATGACCAACAGATAGACCAAATGAGAAAGGAGCTTAAGTTGAGTGAGAAAGGCATGGTTTATGTCAAAGGTATTTTTGAACAATAATTATTAGTTTCTCTTTTTCTTTTCCCTTTTTTTTCTTTCCTGCTTTACCATAGTTGAAGGCATCTTCATGAGTCCGTATATTCTTGTTCCAAAAACTCAAAATCACAGTCCAGATTCTGGAAAGTACAACAATTTTCAACATATGAATCATACAAATACATCAAAATTTGAACATGTTCTCAATTTTTTTTTTTTTGT

mRNA sequence

ATGGCGGCCAAGCTTCTACCATCATCTCATCTCTATCCTCTCCCTTCCAACTCCTTCTCCGCCATAGACCTATCTCCACGCCCATGCTTCGCCCGACCTCGCACTCATTTCAAGCCTCACAGATCGGTTACCGTCAGAGTCAGTGCGGAGCCGCTCGTCGCTCTCCAAGACCACAACAACTCCGCCTTCCTCCTCGCTGAGTCTGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCAAGGTTGTGAAGAAGACGTTCGTTAGCGAAGATGGGTCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGGAATAATTTTCAAGTCACTGATAGAGGTGAAACCATAACGTTTGAAGGAACGATGGTTCCGAGTCGAGGACAAGCGGCATTATTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGACCATAACATATCCAGATTTTGGCAACAATTGGTTTTGGCTGAGCAGCTTGAGTCCCCTGGCTGGAGCATATTACTGGGTAAAAGCATCAAGAAAGGAAGAAATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGTTGGGAGAGATTGTTGTTCAAGGAGATGACCAACAGATAGACCAAATGAGAAAGGAGCTTAAGTTGAGTGAGAAAGGCATGGTTTATGTCAAAGGTATTTTTGAACAATAA

Coding sequence (CDS)

ATGGCGGCCAAGCTTCTACCATCATCTCATCTCTATCCTCTCCCTTCCAACTCCTTCTCCGCCATAGACCTATCTCCACGCCCATGCTTCGCCCGACCTCGCACTCATTTCAAGCCTCACAGATCGGTTACCGTCAGAGTCAGTGCGGAGCCGCTCGTCGCTCTCCAAGACCACAACAACTCCGCCTTCCTCCTCGCTGAGTCTGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTATGGTCTCTTATCAAACGATCCGTCAAGTCCAAGGTTGTGAAGAAGACGTTCGTTAGCGAAGATGGGTCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGGAATAATTTTCAAGTCACTGATAGAGGTGAAACCATAACGTTTGAAGGAACGATGGTTCCGAGTCGAGGACAAGCGGCATTATTGACATTCTGTACGTGCATTAGCTTGGCCAGTGTGGGACTTGTTCTGACCATAACATATCCAGATTTTGGCAACAATTGGTTTTGGCTGAGCAGCTTGAGTCCCCTGGCTGGAGCATATTACTGGGTAAAAGCATCAAGAAAGGAAGAAATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGTTGGGAGAGATTGTTGTTCAAGGAGATGACCAACAGATAGACCAAATGAGAAAGGAGCTTAAGTTGAGTGAGAAAGGCATGGTTTATGTCAAAGGTATTTTTGAACAATAA

Protein sequence

MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ*

Homology

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BLAST of Csa5G464810 vs. Swiss-Prot
Match: CCB1_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana GN=CCB1 PE=1 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 9.3e-85
Identity = 158/201 (78.61%), Postives = 176/201 (87.56%), Query Frame = 1


Query: 56  QDHNNSAFLLAESVG-YSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSK 115
           + + NS  L+ E+ G YS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV  D  K
Sbjct: 66  EQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFVVND-VK 125

Query: 116 KEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT 175
           KEP Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLVLT
Sbjct: 126 KEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLT 185

Query: 176 ITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQ 235
           IT PDFGNNWF++  LSPLAG YYW KASRKEEIKVKM+VG  GRL EIVVQGDD Q+++
Sbjct: 186 ITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEE 245

Query: 236 MRKELKLSEKGMVYVKGIFEQ 256
           MRKEL+L+EKGMVYVKG+FE+
Sbjct: 246 MRKELQLNEKGMVYVKGLFER 265

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BLAST of Csa5G464810 vs. TrEMBL
Match: A0A0A0KRU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 3.8e-141
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1


Query: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60
           MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120
           SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180
           AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240
           GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

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BLAST of Csa5G464810 vs. TrEMBL
Match: D7SVG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01020 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 6.1e-91
Identity = 184/267 (68.91%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MAAKLLPSSH----LYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPL---V 60
           MAAKLL  SH    L PL     S   L  +P   R  T  +P R V      +P+    
Sbjct: 1   MAAKLLSHSHPLSSLSPLSKFRTSDFTLQHQPWLRRTPTPTRPKRLVVQVSLHDPISSST 60

Query: 61  ALQDHNN------SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTF 120
           AL  H +      S F LAES GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+VKKTF
Sbjct: 61  ALLHHLHTHQTPYSLFELAESTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTF 120

Query: 121 VSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLA 180
           + E   K +PN +AGEILSFF+RNNF V+DRGETITFEG MVPSRGQAALLTFCTCISLA
Sbjct: 121 IGEGEGKNKPNHMAGEILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCISLA 180

Query: 181 SVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQG 240
           SVGLVLTIT+PD GNNWFWL+ LSPLAGAYYW +ASRKE+IKVKMIV +DG L EI+VQG
Sbjct: 181 SVGLVLTITFPDVGNNWFWLTILSPLAGAYYWKRASRKEQIKVKMIVADDGTLSEIIVQG 240

Query: 241 DDQQIDQMRKELKLSEKGMVYVKGIFE 255
           DDQQ++QMRKEL+LSEKGMVYVKGIFE
Sbjct: 241 DDQQVEQMRKELQLSEKGMVYVKGIFE 267

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BLAST of Csa5G464810 vs. TrEMBL
Match: A0A061ED97_THECC (Cofactor assembly of complex C isoform 1 OS=Theobroma cacao GN=TCM_017354 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.8e-90
Identity = 173/235 (73.62%), Postives = 193/235 (82.13%), Query Frame = 1


Query: 33  PRTHFKPHRSVTVRVSAEPLV-----ALQDH-------NNSAFLLAESVGYSMASYYTSL 92
           P TH +P R +  R+S +  +     AL DH        +S +LLAES GYS+ASYYTSL
Sbjct: 41  PPTHLRPGRQLLARLSLQQTLLSSSSALSDHLQNYHQNPDSMYLLAESAGYSLASYYTSL 100

Query: 93  GLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGE 152
           GLFVISVPGLWSLIKRSVKSK+V+KTF+ E   KK PNQ+AGEILSFFTRNNF VTDRGE
Sbjct: 101 GLFVISVPGLWSLIKRSVKSKIVQKTFIGEGEEKKAPNQVAGEILSFFTRNNFVVTDRGE 160

Query: 153 TITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWV 212
           TITFEG MVPSRGQAALLTFCTCISLASV LVLTIT PD GNNWFW++ LSP AGAYYW 
Sbjct: 161 TITFEGMMVPSRGQAALLTFCTCISLASVALVLTITVPDVGNNWFWITVLSPSAGAYYWK 220

Query: 213 KASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ 256
           +ASRKE+IKVK++V  DG L EIVVQGDDQQ+DQMRKELKLSEKGMVYVKGIFE+
Sbjct: 221 RASRKEQIKVKVLVANDGTLSEIVVQGDDQQVDQMRKELKLSEKGMVYVKGIFER 275

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BLAST of Csa5G464810 vs. TrEMBL
Match: A0A067L3R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26881 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 6.7e-90
Identity = 167/216 (77.31%), Postives = 186/216 (86.11%), Query Frame = 1


Query: 40  HRSVTVRVSAEPLVALQDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVK 99
           H S +     E L     + NS FL+AES GYS+ASYYTSLGLFVISVPGLWSLIKRSVK
Sbjct: 59  HVSSSSSALMEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVK 118

Query: 100 SKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLT 159
           SK+V+KTF+ E   KK PNQ+AGEILSFFTRNNF V DRGETITFEG MVPSRGQAALLT
Sbjct: 119 SKIVQKTFIGEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAALLT 178

Query: 160 FCTCISLASVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGR 219
           FCTCISLASV LVLTIT+PDFGNNWFW++ LSPLAGAYYW +ASRKE+IKVKMIV EDG 
Sbjct: 179 FCTCISLASVALVLTITFPDFGNNWFWITILSPLAGAYYWKQASRKEQIKVKMIVAEDGT 238

Query: 220 LGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ 256
           L EI+VQGDDQQ+++MRKEL+LSEKGMVYVKGIFE+
Sbjct: 239 LSEIIVQGDDQQVEEMRKELQLSEKGMVYVKGIFER 274

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BLAST of Csa5G464810 vs. TrEMBL
Match: A0A0B2NYQ9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000295 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.6e-89
Identity = 179/264 (67.80%), Postives = 203/264 (76.89%), Query Frame = 1


Query: 3   AKLLPSSHLYPLPS-------NSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSA--EPLV 62
           A L P  H +PL S        +F+   + P   F   R H +  +     VS   +PLV
Sbjct: 6   ALLPPPPHPHPLCSLPIPTKTRAFAFHQVDPFLGFKLERQHKRKSKKHVAHVSLHDDPLV 65

Query: 63  A--LQDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED 122
           +  +Q +     LLAES GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTF+ E 
Sbjct: 66  SYTIQQNPYHLVLLAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFIGE- 125

Query: 123 GSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGL 182
           G KK PNQ AGEILSFFTRNNF VTDRGETITFEG MVPSRGQAALLTFCTCISLASV L
Sbjct: 126 GEKKAPNQAAGEILSFFTRNNFTVTDRGETITFEGMMVPSRGQAALLTFCTCISLASVAL 185

Query: 183 VLTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQ 242
           VLTIT+PD GNNWFW++  SPLAG YYW +ASRKE+IKVKMIVG DG L EI+VQGDDQQ
Sbjct: 186 VLTITFPDVGNNWFWITISSPLAGLYYWTRASRKEQIKVKMIVGNDGNLSEIIVQGDDQQ 245

Query: 243 IDQMRKELKLSEKGMVYVKGIFEQ 256
           ++QMRKELKLSEKGMVYVKG+FE+
Sbjct: 246 VEQMRKELKLSEKGMVYVKGVFER 268

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BLAST of Csa5G464810 vs. TAIR10
Match: AT3G26710.1 (AT3G26710.1 cofactor assembly of complex C)

HSP 1 Score: 314.7 bits (805), Expect = 5.3e-86
Identity = 158/201 (78.61%), Postives = 176/201 (87.56%), Query Frame = 1


Query: 56  QDHNNSAFLLAESVG-YSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSK 115
           + + NS  L+ E+ G YS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV  D  K
Sbjct: 66  EQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFVVND-VK 125

Query: 116 KEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT 175
           KEP Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLVLT
Sbjct: 126 KEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLT 185

Query: 176 ITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQ 235
           IT PDFGNNWF++  LSPLAG YYW KASRKEEIKVKM+VG  GRL EIVVQGDD Q+++
Sbjct: 186 ITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEE 245

Query: 236 MRKELKLSEKGMVYVKGIFEQ 256
           MRKEL+L+EKGMVYVKG+FE+
Sbjct: 246 MRKELQLNEKGMVYVKGLFER 265

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BLAST of Csa5G464810 vs. NCBI nr
Match: gi|449452032|ref|XP_004143764.1| (PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus])

HSP 1 Score: 508.8 bits (1309), Expect = 5.4e-141
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1


Query: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60
           MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120
           SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180
           AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240
           GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of Csa5G464810 vs. NCBI nr
Match: gi|659072406|ref|XP_008465491.1| (PREDICTED: uncharacterized protein LOC103503108 [Cucumis melo])

HSP 1 Score: 491.5 bits (1264), Expect = 8.9e-136
Identity = 244/255 (95.69%), Postives = 250/255 (98.04%), Query Frame = 1


Query: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60
           MAAKLLPSSH YPLPSNSFSAIDLSPRPCF RPRTHFKPHRSVTV+V+AEPL+ALQ+HNN
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120
           SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSED SKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTIT+PDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240
           GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQIDQMRKELK
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of Csa5G464810 vs. NCBI nr
Match: gi|225451623|ref|XP_002276522.1| (PREDICTED: uncharacterized protein LOC100256625 [Vitis vinifera])

HSP 1 Score: 342.0 bits (876), Expect = 8.7e-91
Identity = 184/267 (68.91%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MAAKLLPSSH----LYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPL---V 60
           MAAKLL  SH    L PL     S   L  +P   R  T  +P R V      +P+    
Sbjct: 1   MAAKLLSHSHPLSSLSPLSKFRTSDFTLQHQPWLRRTPTPTRPKRLVVQVSLHDPISSST 60

Query: 61  ALQDHNN------SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTF 120
           AL  H +      S F LAES GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+VKKTF
Sbjct: 61  ALLHHLHTHQTPYSLFELAESTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTF 120

Query: 121 VSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLA 180
           + E   K +PN +AGEILSFF+RNNF V+DRGETITFEG MVPSRGQAALLTFCTCISLA
Sbjct: 121 IGEGEGKNKPNHMAGEILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCISLA 180

Query: 181 SVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQG 240
           SVGLVLTIT+PD GNNWFWL+ LSPLAGAYYW +ASRKE+IKVKMIV +DG L EI+VQG
Sbjct: 181 SVGLVLTITFPDVGNNWFWLTILSPLAGAYYWKRASRKEQIKVKMIVADDGTLSEIIVQG 240

Query: 241 DDQQIDQMRKELKLSEKGMVYVKGIFE 255
           DDQQ++QMRKEL+LSEKGMVYVKGIFE
Sbjct: 241 DDQQVEQMRKELQLSEKGMVYVKGIFE 267

[Close]

BLAST of Csa5G464810 vs. NCBI nr
Match: gi|590647922|ref|XP_007032034.1| (Cofactor assembly of complex C isoform 1 [Theobroma cacao])

HSP 1 Score: 340.5 bits (872), Expect = 2.5e-90
Identity = 173/235 (73.62%), Postives = 193/235 (82.13%), Query Frame = 1


Query: 33  PRTHFKPHRSVTVRVSAEPLV-----ALQDH-------NNSAFLLAESVGYSMASYYTSL 92
           P TH +P R +  R+S +  +     AL DH        +S +LLAES GYS+ASYYTSL
Sbjct: 41  PPTHLRPGRQLLARLSLQQTLLSSSSALSDHLQNYHQNPDSMYLLAESAGYSLASYYTSL 100

Query: 93  GLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGE 152
           GLFVISVPGLWSLIKRSVKSK+V+KTF+ E   KK PNQ+AGEILSFFTRNNF VTDRGE
Sbjct: 101 GLFVISVPGLWSLIKRSVKSKIVQKTFIGEGEEKKAPNQVAGEILSFFTRNNFVVTDRGE 160

Query: 153 TITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWV 212
           TITFEG MVPSRGQAALLTFCTCISLASV LVLTIT PD GNNWFW++ LSP AGAYYW 
Sbjct: 161 TITFEGMMVPSRGQAALLTFCTCISLASVALVLTITVPDVGNNWFWITVLSPSAGAYYWK 220

Query: 213 KASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ 256
           +ASRKE+IKVK++V  DG L EIVVQGDDQQ+DQMRKELKLSEKGMVYVKGIFE+
Sbjct: 221 RASRKEQIKVKVLVANDGTLSEIVVQGDDQQVDQMRKELKLSEKGMVYVKGIFER 275

[Close]

BLAST of Csa5G464810 vs. NCBI nr
Match: gi|802564618|ref|XP_012067360.1| (PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas])

HSP 1 Score: 338.6 bits (867), Expect = 9.7e-90
Identity = 167/216 (77.31%), Postives = 186/216 (86.11%), Query Frame = 1


Query: 40  HRSVTVRVSAEPLVALQDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVK 99
           H S +     E L     + NS FL+AES GYS+ASYYTSLGLFVISVPGLWSLIKRSVK
Sbjct: 59  HVSSSSSALMEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRSVK 118

Query: 100 SKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLT 159
           SK+V+KTF+ E   KK PNQ+AGEILSFFTRNNF V DRGETITFEG MVPSRGQAALLT
Sbjct: 119 SKIVQKTFIGEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAALLT 178

Query: 160 FCTCISLASVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGR 219
           FCTCISLASV LVLTIT+PDFGNNWFW++ LSPLAGAYYW +ASRKE+IKVKMIV EDG 
Sbjct: 179 FCTCISLASVALVLTITFPDFGNNWFWITILSPLAGAYYWKQASRKEQIKVKMIVAEDGT 238

Query: 220 LGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ 256
           L EI+VQGDDQQ+++MRKEL+LSEKGMVYVKGIFE+
Sbjct: 239 LSEIIVQGDDQQVEEMRKELQLSEKGMVYVKGIFER 274

The following BLAST results are available for this feature:

BLAST of Csa5G464810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB1_ARATH	9.3e-85	78.61	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of Csa5G464810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRU8_CUCSA	3.8e-141	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G464810 PE=4 SV=1	[more]
D7SVG9_VITVI	6.1e-91	68.91	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01020 PE=4 SV=...	[more]
A0A061ED97_THECC	1.8e-90	73.62	Cofactor assembly of complex C isoform 1 OS=Theobroma cacao GN=TCM_017354 PE=4 S...	[more]
A0A067L3R0_JATCU	6.7e-90	77.31	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26881 PE=4 SV=1	[more]
A0A0B2NYQ9_GLYSO	2.6e-89	67.80	Uncharacterized protein OS=Glycine soja GN=glysoja_000295 PE=4 SV=1	[more]

BLAST of Csa5G464810 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26710.1	5.3e-86	78.61	cofactor assembly of complex C	[more]

BLAST of Csa5G464810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452032\|ref\|XP_004143764.1\|	5.4e-141	100.00	PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus]	[more]
gi\|659072406\|ref\|XP_008465491.1\|	8.9e-136	95.69	PREDICTED: uncharacterized protein LOC103503108 [Cucumis melo]	[more]
gi\|225451623\|ref\|XP_002276522.1\|	8.7e-91	68.91	PREDICTED: uncharacterized protein LOC100256625 [Vitis vinifera]	[more]
gi\|590647922\|ref\|XP_007032034.1\|	2.5e-90	73.62	Cofactor assembly of complex C isoform 1 [Theobroma cacao]	[more]
gi\|802564618\|ref\|XP_012067360.1\|	9.7e-90	77.31	PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021919	CCB1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0009657	plastid organization
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0043623	cellular protein complex assembly
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084416	cucumber EST collection version 3.0	transcribed_cluster
CU108208	cucumber EST collection version 3.0	transcribed_cluster
CU109309	cucumber EST collection version 3.0	transcribed_cluster
CU178179	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G464810.1	Csa5G464810.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU108208	CU108208	transcribed_cluster
CU084416	CU084416	transcribed_cluster
CU178179	CU178179	transcribed_cluster
CU109309	CU109309	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	DUF3529	coord: 75..241 score: 2.3
None	No IPR available	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 54..255 score: 3.9E
None	No IPR available	PANTHER	PTHR35302:SF1	SUBFAMILY NOT NAMED	coord: 54..255 score: 3.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G464810	Cla005927	Watermelon (97103) v1	cuwmB410
Csa5G464810	MELO3C005101	Melon (DHL92) v3.5.1	cumeB363
Csa5G464810	ClCG01G007850	Watermelon (Charleston Gray)	cuwcgB366
Csa5G464810	Lsi09G008290	Bottle gourd (USVL1VR-Ls)	culsiB324
Csa5G464810	MELO3C005101.2	Melon (DHL92) v3.6.1	cumedB341
Csa5G464810	Cla97C01G008190	Watermelon (97103) v2	cuwmbB338
Csa5G464810	Bhi12G000948	Wax gourd	cuwgoB454
Csa5G464810	CSPI05G15890	Wild cucumber (PI 183967)	cpicuB239
Csa5G464810	Cucsa.033620	Cucumber (Gy14) v1	cgycuB005
Csa5G464810	CmaCh15G008100	Cucurbita maxima (Rimu)	cmacuB303
Csa5G464810	CmoCh15G008350	Cucurbita moschata (Rifu)	cmocuB291
Csa5G464810	Cp4.1LG13g05840	Cucurbita pepo (Zucchini)	cpecuB179
Csa5G464810	CsGy5G015640	Cucumber (Gy14) v2	cgybcuB223
Csa5G464810	Carg01394	Silver-seed gourd	carcuB0843

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G464810	Cucurbita maxima (Rimu)	cmacuB728
Csa5G464810	Cucurbita moschata (Rifu)	cmocuB720
Csa5G464810	Cucurbita pepo (Zucchini)	cpecuB421
Csa5G464810	Silver-seed gourd	carcuB0510