Cla97C01G008190 (gene) Watermelon (97103) v2

Overview
NameCla97C01G008190
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic
LocationCla97Chr01 : 8413471 .. 8416053 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCAAGCTTCTACCATCATCCAATCTCTATCCTCCCCCTTCCAACTCCTTCTCCGCCGTAGACCTAACTCCGCGCCCATGCTTCGGCCGACCTCGCACTCATTTCAACCAGCACAGATCGGTAACCGTCAGAGTCAATGCGGAACCGCTCGTCGTTCTCCAAGACCACCACAACTCCGCCTTCCTCCTGGCTGAGACAGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTATGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTATTTTATAAATTCACCTCCGATGCAATTCGAATCACATCGCTCTGTTATTCTTCTCTGTTTCTGTTGTGTGTAATCCGTTGAAAATCGCATGGATTAGGTTGTGAAGAAGACGTTCGTTAGCGATGGAGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGTAATAATTTCCAAGTCACAGACAGAGGTGAAACCATAACGTAAGGCGAATTTGCTCTTGGAATTGGAACAATTTTGTGATTCTTTGTTTAGTTGAATTGCTTGGAATTAACTTCTGGAGGTTCTGTTGATGCTTGATTGTGAAGGTTTGAAGGAACAATGGTGCCGAGTCGAGGGCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCTAGCGTGGGTCTTGTTCTGACCATAACGTTTCCAGATTTTGGCAACAATTGGTTTTGGATTAGCAGCTTGAGTCCCTTAGCGTAAGTCCCACTCTACTTCTCTTCTTTCTTGCTTGTTCAAGTTCCACCATTAATGCATATTTTGATGCACTAAGCTCAAAGGATAAGTTGATTTTTACCCAATCCAAAACTCAAGATTTCAAATACTTTATATAAAATACCTTATATAAAATTACCGTCTAGTTTGGTAATTCTTTGTTTTTTACCGCTATTCCTATGAGTAAGTTTCTTTATTTGGTTATTCAATTTTCACTAATGTTTTATAAAATCAAGTCAAATTTTAAAAATTAGAACAATTTTTAAAAAATTTGACTAAAAATTATTTTGCTAAAAGTGACAACTTTTGGAGAAAAAAAGCATGAATTTGAAAAAATAGAAAATTAAAAACAAATGAGCTTACATTTCATGGTGGAGGAAAAAAATTTATTGAAGTTTGGGTAAGATTTTAGTTTACATCTTTAGTTTTAATTTAGTCTTTAACCTTTAGAAAGTTAGAAATGATCGCCCAAGGAGTTGGTGAGTCCCACTACTAAAAATACATGAATTTTATATCTTATCAACTCCTTATATTCTGAGCCCCAAAAATTTACAACTCCCTAAATTTTATAACTCCTGCTACAAAACTCAATTCATGACGTAATAATTGATTTTGTTTTTCACTTGCTACCACTCCATTCAAATATCTAAAATTGTGCTATTTTTATAAGGCCAAATTATTGTTTTAAGAAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGTAAACTGTCATTTATTCCAAAAATGTCCACTTTTTTATTTTTTTCAAAAGATGTAAATATTATCCTTTAACATTTTTTAAGTTTTCAAAACTACACTCCAAAGAAATATATGAAAAGTGTTGAACGAAAAATCGTGCAGTAACTTCAAAACAAAATTTGAGATTAATCACATTATTTTAGGTCATTTTGAAGTCCCAACTGATTCTACGTCAAGAGTAGTTCTGAAAAATTTATTAAAAGGTCAAAACATAATATTGCAATCTTCGAGAGATTGAAGATAATTTTTAAATAAAGGGTAGATATCAAAAGTATTTTGTTATTTAATTAATTAGAAAATAACATTAGATTCAATTCTTCCTTGAGATTGCAAAGGTTTCTAACAAATTAGAAGAAATTAACTTGACTTTTTATAACAACGACCTAATAATATCATAAACAGTACTTCAAATTCTATCTTTGATTTTAAAATTCAAAAAGGGATACCAAAAGGAATAAAGCAAAAAAAACAATAAAGAGATGACATGAATAAATAAACTTCAGGCTTGTTTGGATTGCCTAGATTGGATTGACTAGAGAAAAAAATGTTCTTCACAAAAGTCATTTTTTTATTTAAACTCTTTTGATAAAAAGAGTTTAAAATGTTTCAAAAATTATTTTAAGTCATTGTCAAATATTTCAATTTTTTACAAAATGACTTATTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACAATATCCAATTGGAGATGAAAAGTAGCAACAGTTAAAGAATGAAATCATATATTAATAGTTTCCAAATTCAAAATAAGATTGAGATTACATGACAATACCTTAGAAGCTGCAAACTGCAGTGGAGCATACTACTGGGTGAAAGCATCAAGAAAGGAAGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGCTTGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTTGAGCAAATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTTTATGTCAAAGGTATTTTTGAGCAATGA

mRNA sequence

ATGGCGGCCAAGCTTCTACCATCATCCAATCTCTATCCTCCCCCTTCCAACTCCTTCTCCGCCGTAGACCTAACTCCGCGCCCATGCTTCGGCCGACCTCGCACTCATTTCAACCAGCACAGATCGGTAACCGTCAGAGTCAATGCGGAACCGCTCGTCGTTCTCCAAGACCACCACAACTCCGCCTTCCTCCTGGCTGAGACAGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTATGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACGTTCGTTAGCGATGGAGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGTAATAATTTCCAAGTCACAGACAGAGGTGAAACCATAACGTTTGAAGGAACAATGGTGCCGAGTCGAGGGCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCTAGCGTGGGTCTTGTTCTGACCATAACGTTTCCAGATTTTGGCAACAATTGGTTTTGGATTAGCAGCTTGAGTCCCTTAGCTGGAGCATACTACTGGGTGAAAGCATCAAGAAAGGAAGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGCTTGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTTGAGCAAATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTTTATGTCAAAGGTATTTTTGAGCAATGA

Coding sequence (CDS)

ATGGCGGCCAAGCTTCTACCATCATCCAATCTCTATCCTCCCCCTTCCAACTCCTTCTCCGCCGTAGACCTAACTCCGCGCCCATGCTTCGGCCGACCTCGCACTCATTTCAACCAGCACAGATCGGTAACCGTCAGAGTCAATGCGGAACCGCTCGTCGTTCTCCAAGACCACCACAACTCCGCCTTCCTCCTGGCTGAGACAGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTATGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACGTTCGTTAGCGATGGAGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGTAATAATTTCCAAGTCACAGACAGAGGTGAAACCATAACGTTTGAAGGAACAATGGTGCCGAGTCGAGGGCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCTAGCGTGGGTCTTGTTCTGACCATAACGTTTCCAGATTTTGGCAACAATTGGTTTTGGATTAGCAGCTTGAGTCCCTTAGCTGGAGCATACTACTGGGTGAAAGCATCAAGAAAGGAAGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGCTTGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTTGAGCAAATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTTTATGTCAAAGGTATTTTTGAGCAATGA

Protein sequence

MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHNSAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ
Homology
[Close]
BLAST of Cla97C01G008190 vs. NCBI nr
Match: XP_004143764.1 (PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus] >KGN51132.1 hypothetical protein Csa_5G464810 [Cucumis sativus])

HSP 1 Score: 470.7 bits (1210), Expect = 3.2e-129
Identity = 235/255 (92.16%), Postives = 248/255 (97.25%), Query Frame = 0 

Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+LYP PSNSFSA+DL+PRPCF RPRTHF  HRSVTVRV+AEPLV LQDH+N
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SAFLLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+  SKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT+PDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]
BLAST of Cla97C01G008190 vs. NCBI nr
Match: XP_008465491.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucumis melo])

HSP 1 Score: 466.1 bits (1198), Expect = 7.8e-128
Identity = 233/255 (91.37%), Postives = 246/255 (96.47%), Query Frame = 0 

Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+ YP PSNSFSA+DL+PRPCF RPRTHF  HRSVTV+VNAEPL+ LQ+H+N
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SAFLLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+ ESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]
BLAST of Cla97C01G008190 vs. NCBI nr
Match: XP_022938901.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 450.7 bits (1158), Expect = 3.4e-123
Identity = 233/260 (89.62%), Postives = 238/260 (91.54%), Query Frame = 0 

Query: 1   MAAKLLPSSNLYPPPS-----NSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVL 60
           MA K LP S+LYP PS     +SFSA DLTPRPCFGRPRTHF   RSV VRVN EPLV  
Sbjct: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60

Query: 61  QDHHNSAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKK 120
           QDHHNSAFLLAE+VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+GESKK
Sbjct: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120

Query: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQM 240
           TFPD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQVEQM
Sbjct: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 256
           RKELQLSEKGMVYVKGIFEQ
Sbjct: 241 RKELQLSEKGMVYVKGIFEQ 259

[Close]
BLAST of Cla97C01G008190 vs. NCBI nr
Match: XP_023550037.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 450.3 bits (1157), Expect = 4.4e-123
Identity = 233/260 (89.62%), Postives = 239/260 (91.92%), Query Frame = 0 

Query: 1   MAAKLLPSSNLYPPPS-----NSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVL 60
           MAAK+LP S+LYP PS     +SFSA DLTPRPCFG PRTHF   RSV VRVN EPLV  
Sbjct: 1   MAAKILP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSVAVRVNVEPLVAF 60

Query: 61  QDHHNSAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKK 120
           QDHHNSAFLLAE+VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+GESKK
Sbjct: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120

Query: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQM 240
           TFPD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQVEQM
Sbjct: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 256
           RKELQLSEKGMVYVKGIFEQ
Sbjct: 241 RKELQLSEKGMVYVKGIFEQ 259

[Close]
BLAST of Cla97C01G008190 vs. NCBI nr
Match: XP_022992736.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 438.0 bits (1125), Expect = 2.3e-119
Identity = 228/261 (87.36%), Postives = 234/261 (89.66%), Query Frame = 0 

Query: 1   MAAKLLPSSNLYP------PPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVV 60
           MA K LP S+LYP      PPS SFSA DLTPRPCFG PRTHF   RS+ VRVN EPLV 
Sbjct: 1   MAVKFLP-SHLYPLSSPSLPPS-SFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVA 60

Query: 61  LQDHHNSAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESK 120
            QD HNS FLLAE+VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+GESK
Sbjct: 61  FQDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESK 120

Query: 121 KEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT 180
           K PNQ AGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT
Sbjct: 121 KAPNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT 180

Query: 181 ITFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQ 240
           ITFPD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEIIVQGDDQQVEQ
Sbjct: 181 ITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQ 240

Query: 241 MRKELQLSEKGMVYVKGIFEQ 256
           MRKELQLSEKGMVYVKGIFEQ
Sbjct: 241 MRKELQLSEKGMVYVKGIFEQ 259

[Close]
BLAST of Cla97C01G008190 vs. TrEMBL
Match: tr|A0A0A0KRU8|A0A0A0KRU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 2.1e-129
Identity = 235/255 (92.16%), Postives = 248/255 (97.25%), Query Frame = 0 

Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+LYP PSNSFSA+DL+PRPCF RPRTHF  HRSVTVRV+AEPLV LQDH+N
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SAFLLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+  SKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT+PDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]
BLAST of Cla97C01G008190 vs. TrEMBL
Match: tr|A0A1S3CPE0|A0A1S3CPE0_CUCME (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503108 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 5.1e-128
Identity = 233/255 (91.37%), Postives = 246/255 (96.47%), Query Frame = 0 

Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+ YP PSNSFSA+DL+PRPCF RPRTHF  HRSVTV+VNAEPL+ LQ+H+N
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SAFLLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+ ESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]
BLAST of Cla97C01G008190 vs. TrEMBL
Match: tr|A0A067L3R0|A0A067L3R0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26881 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.6e-91
Identity = 173/218 (79.36%), Postives = 190/218 (87.16%), Query Frame = 0 

Query: 38  NQHRSVTVRVNAEPLVVLQDHHNSAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRS 97
           ++H S +     E L     + NS FL+AE+ GYS+ASYYTSLGLFVISVPGLWSLIKRS
Sbjct: 57  HEHVSSSSSALMEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRS 116

Query: 98  VKSKVVKKTFVSDGESKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAAL 157
           VKSK+V+KTF+ +GE KK PNQ+AGEILSFFTRNNF V DRGETITFEG MVPSRGQAAL
Sbjct: 117 VKSKIVQKTFIGEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAAL 176

Query: 158 LTFCTCISLASVGLVLTITFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGED 217
           LTFCTCISLASV LVLTITFPDFGNNWFWI+ LSPLAGAYYW +ASRKE+IKVKMIV ED
Sbjct: 177 LTFCTCISLASVALVLTITFPDFGNNWFWITILSPLAGAYYWKQASRKEQIKVKMIVAED 236

Query: 218 GRLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 256
           G L EIIVQGDDQQVE+MRKELQLSEKGMVYVKGIFE+
Sbjct: 237 GTLSEIIVQGDDQQVEEMRKELQLSEKGMVYVKGIFER 274

[Close]
BLAST of Cla97C01G008190 vs. TrEMBL
Match: tr|B9RGW8|B9RGW8_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1445030 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.5e-90
Identity = 185/264 (70.08%), Postives = 210/264 (79.55%), Query Frame = 0 

Query: 3   AKLLPSSN---LYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRV--------NAEP 62
           AKLL S N   +  P   S     L P P  G+ RT    +R V VRV        ++  
Sbjct: 6   AKLLLSPNPLSISLPSKLSCKKHHLWPGP--GQARTPTTPNRQV-VRVVSLQEHVLSSSA 65

Query: 63  LVVLQDHHNSAFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDG 122
           ++V Q HH+S F +AE++GYS ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTF+ +G
Sbjct: 66  ILVEQLHHDSMFSVAESMGYSSASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFIGEG 125

Query: 123 ESKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGL 182
           E +K PN +AGEILSFFTRNNF VTDRGETITFEG M+PSRGQAALLTFCTCISLASV L
Sbjct: 126 EGRKAPNHVAGEILSFFTRNNFVVTDRGETITFEGMMIPSRGQAALLTFCTCISLASVAL 185

Query: 183 VLTITFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQ 242
           VLTIT PDFGNNWFWI+ LSPLAGAYYW +ASRKE+IKVKM+V +DG L EI+VQGDDQQ
Sbjct: 186 VLTITLPDFGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVSDDGTLSEIVVQGDDQQ 245

Query: 243 VEQMRKELQLSEKGMVYVKGIFEQ 256
           VEQMRKELQLSEKGMVYVKGIFE+
Sbjct: 246 VEQMRKELQLSEKGMVYVKGIFER 266

[Close]
BLAST of Cla97C01G008190 vs. TrEMBL
Match: tr|A0A1R3JWS4|A0A1R3JWS4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13379 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 4.3e-90
Identity = 177/254 (69.69%), Postives = 203/254 (79.92%), Query Frame = 0 

Query: 14  PPSNSFSAVDLTPR-PCFGRPRTHFNQHRSVTVRVNAEPLVV--------LQDHH---NS 73
           P  N+ S   L  R P   R  TH    R +  R++ +  ++        LQ +H   +S
Sbjct: 20  PSRNTTSHFHLHQRHPWLKRAPTHSRPERQMLARLSLQETILSSSAVADHLQHYHQNPDS 79

Query: 74  AFLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQIA 133
            FLLAE+ GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+VKKTF+ +GE KK PNQ+A
Sbjct: 80  LFLLAESTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIGEGEEKKAPNQVA 139

Query: 134 GEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDFG 193
           GEILSFFTRNNF VTDRGETITFEG M PSRGQAALLTFCTCISLASV LVLTIT PD G
Sbjct: 140 GEILSFFTRNNFAVTDRGETITFEGMMTPSRGQAALLTFCTCISLASVALVLTITLPDVG 199

Query: 194 NNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQL 253
           NNWFW+++LSPLAGAYYW +ASRKE+IKVKM+V EDG L EI+VQGDDQQV++MRKEL+L
Sbjct: 200 NNWFWLTALSPLAGAYYWKRASRKEQIKVKMLVAEDGTLSEIVVQGDDQQVDEMRKELKL 259

Query: 254 SEKGMVYVKGIFEQ 256
           SEKGMVYVKGIFE+
Sbjct: 260 SEKGMVYVKGIFER 273

[Close]
BLAST of Cla97C01G008190 vs. Swiss-Prot
Match: sp|Q9LSE4|CCB1_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB1 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.8e-84
Identity = 169/233 (72.53%), Postives = 190/233 (81.55%), Query Frame = 0 

Query: 35  THFNQHRSVTVRVNAEPLVVL-----------QDHHNSAFLLAE-TVGYSMASYYTSLGL 94
           T  N+  +VT  +  EPL V+           + + NS  L+ E T GYS+ASYYTSLGL
Sbjct: 35  TKRNRVSAVTAMI-VEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGL 94

Query: 95  FVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQIAGEILSFFTRNNFQVTDRGETI 154
           FVISVPGLWSLIKRSVKSK+V+KTFV + + KKEP Q+AGEILSFFTR NF +TDRGETI
Sbjct: 95  FVISVPGLWSLIKRSVKSKIVRKTFVVN-DVKKEPKQVAGEILSFFTRKNFNITDRGETI 154

Query: 155 TFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDFGNNWFWISSLSPLAGAYYWVKA 214
           TFEG MVPSRGQAALLTFCTCISLASVGLVLTIT PDFGNNWF+I  LSPLAG YYW KA
Sbjct: 155 TFEGKMVPSRGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKA 214

Query: 215 SRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 256
           SRKEEIKVKM+VG  GRL EI+VQGDD QVE+MRKELQL+EKGMVYVKG+FE+
Sbjct: 215 SRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

[Close]
BLAST of Cla97C01G008190 vs. TAIR10
Match: AT3G26710.1 (cofactor assembly of complex C)

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-85
Identity = 169/233 (72.53%), Postives = 190/233 (81.55%), Query Frame = 0 

Query: 35  THFNQHRSVTVRVNAEPLVVL-----------QDHHNSAFLLAE-TVGYSMASYYTSLGL 94
           T  N+  +VT  +  EPL V+           + + NS  L+ E T GYS+ASYYTSLGL
Sbjct: 35  TKRNRVSAVTAMI-VEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGL 94

Query: 95  FVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQIAGEILSFFTRNNFQVTDRGETI 154
           FVISVPGLWSLIKRSVKSK+V+KTFV + + KKEP Q+AGEILSFFTR NF +TDRGETI
Sbjct: 95  FVISVPGLWSLIKRSVKSKIVRKTFVVN-DVKKEPKQVAGEILSFFTRKNFNITDRGETI 154

Query: 155 TFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDFGNNWFWISSLSPLAGAYYWVKA 214
           TFEG MVPSRGQAALLTFCTCISLASVGLVLTIT PDFGNNWF+I  LSPLAG YYW KA
Sbjct: 155 TFEGKMVPSRGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKA 214

Query: 215 SRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 256
           SRKEEIKVKM+VG  GRL EI+VQGDD QVE+MRKELQL+EKGMVYVKG+FE+
Sbjct: 215 SRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

The following BLAST results are available for this feature:
BLAST of Cla97C01G008190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143764.13.2e-12992.16PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus] >KGN51132.1 hy... [more]
XP_008465491.17.8e-12891.37PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic ... [more]
XP_022938901.13.4e-12389.62protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ... [more]
XP_023550037.14.4e-12389.62protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ... [more]
XP_022992736.12.3e-11987.36protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ... [more]
BLAST of Cla97C01G008190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KRU8|A0A0A0KRU8_CUCSA2.1e-12992.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1[more]
tr|A0A1S3CPE0|A0A1S3CPE0_CUCME5.1e-12891.37protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis ... [more]
tr|A0A067L3R0|A0A067L3R0_JATCU6.6e-9179.36Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26881 PE=4 SV=1[more]
tr|B9RGW8|B9RGW8_RICCO2.5e-9070.08Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1445030 PE=4 SV=1[more]
tr|A0A1R3JWS4|A0A1R3JWS4_9ROSI4.3e-9069.69Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13379 PE=4 SV=1[more]
BLAST of Cla97C01G008190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LSE4|CCB1_ARATH2.8e-8472.53Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop... [more]
BLAST of Cla97C01G008190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G26710.11.5e-8572.53cofactor assembly of complex C[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021919CCB1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044238 primary metabolic process
biological_process GO:0010190 cytochrome b6f complex assembly
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0008150 biological_process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043623 cellular protein complex assembly
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0009657 plastid organization
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G008190.1Cla97C01G008190.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021919Cofactor assembly of complex C subunit B, CCB1PFAMPF12046CCB1coord: 75..241
e-value: 2.9E-56
score: 189.3
IPR021919Cofactor assembly of complex C subunit B, CCB1PANTHERPTHR35302FAMILY NOT NAMEDcoord: 32..254

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G008190Cla005927Watermelon (97103) v1wmwmbB236
Cla97C01G008190Csa5G464810Cucumber (Chinese Long) v2cuwmbB338
Cla97C01G008190MELO3C005101Melon (DHL92) v3.5.1mewmbB009
Cla97C01G008190ClCG01G007850Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G008190CSPI05G15890Wild cucumber (PI 183967)cpiwmbB351
Cla97C01G008190Cucsa.033620Cucumber (Gy14) v1cgywmbB006
Cla97C01G008190CmaCh15G008100Cucurbita maxima (Rimu)cmawmbB289
Cla97C01G008190CmoCh15G008350Cucurbita moschata (Rifu)cmowmbB271
Cla97C01G008190Lsi09G008290Bottle gourd (USVL1VR-Ls)lsiwmbB007
Cla97C01G008190CsGy5G015640Cucumber (Gy14) v2cgybwmbB321
Cla97C01G008190MELO3C005101.2Melon (DHL92) v3.6.1medwmbB008
Cla97C01G008190Carg01394Silver-seed gourdcarwmbB0858
Cla97C01G008190CsaV3_5G024930Cucumber (Chinese Long) v3cucwmbB353
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G008190Silver-seed gourdcarwmbB0501
Cla97C01G008190Cucurbita maxima (Rimu)cmawmbB705
Cla97C01G008190Cucurbita moschata (Rifu)cmowmbB676
Cla97C01G008190Wax gourdwgowmbB057
Cla97C01G008190Wax gourdwgowmbB063