MELO3C004971 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004971
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Shugoshin C terminus, putative
Location	chr12 : 5360413 .. 5360837 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAACATCTTCCATTGGAAGCAAAATGAGAAACAAACTTGCAGATATTACGAATTCAAAAACAATGAGAGCTCACCTTGAAGATGAAAACTCTTTCAAAGCTTCGCAAACGAGGAAGAGCGTTATCGATCAGCTAGTGGAGGTAAGTATCTTGTTTCTTCTTACATCTTCTTTCAGATTTTTAAATTAAAAGTTGTTTTCTTGTTTATTTAATTTCAAGTTGTTGTTTCTGAGATATTTGTTGGGTTTTATTTTAATTTGTGGAACAGGAAAATATGGGTCTTATGAAACTTATTATGGAGAGGAAGTATCCTTCTAGATTTTGCTATTCTGTTTCATATTTTATAGTCTTGAATAAATTTTCTTTACATTACTTATTTCACTGCTTCTTAATTTCGTAGGTACGAAGAGGATATTTAA

mRNA sequence

ATGGCGAAAACATCTTCCATTGGAAGCAAAATGAGAAACAAACTTGCAGATATTACGAATTCAAAAACAATGAGAGCTCACCTTGAAGATGAAAACTCTTTCAAAGCTTCGCAAACGAGGAAGAGCGTTATCGATCAGCTAGTGGAGGAAAATATGGGTCTTATGAAACTTATTATGGAGAGGAAGTACGAAGAGGATATTTAA

Coding sequence (CDS)

ATGGCGAAAACATCTTCCATTGGAAGCAAAATGAGAAACAAACTTGCAGATATTACGAATTCAAAAACAATGAGAGCTCACCTTGAAGATGAAAACTCTTTCAAAGCTTCGCAAACGAGGAAGAGCGTTATCGATCAGCTAGTGGAGGAAAATATGGGTCTTATGAAACTTATTATGGAGAGGAAGTACGAAGAGGATATTTAA

Protein sequence

MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIMERKYEEDI*

Homology

[Close]

BLAST of MELO3C004971 vs. TrEMBL
Match: A0A0A0LSM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097670 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.1e-21
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60
          MAKTSSIGSKMRNKLADITNSKTMR+HLEDENS +ASQ +KSVIDQLV+ENMGLMKLIME
Sbjct: 1  MAKTSSIGSKMRNKLADITNSKTMRSHLEDENSSEASQPKKSVIDQLVKENMGLMKLIME 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of MELO3C004971 vs. TrEMBL
Match: M5W6D6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024036mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.5e-08
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60
          MAK SS+GS MR KL DITN +T +A  +DE   +   T K  IDQL+ E M LM+L+ E
Sbjct: 1  MAKRSSLGSMMRKKLTDITNLQTAKAISKDEKPPEDCPTDKDYIDQLMRERMTLMRLVSE 60

Query: 61 RKY 64
          RKY
Sbjct: 61 RKY 63

[Close]

BLAST of MELO3C004971 vs. NCBI nr
Match: gi|659072061|ref|XP_008463238.1| (PREDICTED: uncharacterized protein LOC103501433 isoform X2 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60
          MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME
Sbjct: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of MELO3C004971 vs. NCBI nr
Match: gi|659072063|ref|XP_008463245.1| (PREDICTED: uncharacterized protein LOC103501433 isoform X3 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60
          MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME
Sbjct: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of MELO3C004971 vs. NCBI nr
Match: gi|659072059|ref|XP_008463230.1| (PREDICTED: uncharacterized protein LOC103501433 isoform X1 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60
          MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME
Sbjct: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of MELO3C004971 vs. NCBI nr
Match: gi|449459158|ref|XP_004147313.1| (PREDICTED: uncharacterized protein LOC101205365 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-21
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60
          MAKTSSIGSKMRNKLADITNSKTMR+HLEDENS +ASQ +KSVIDQLV+ENMGLMKLIME
Sbjct: 1  MAKTSSIGSKMRNKLADITNSKTMRSHLEDENSSEASQPKKSVIDQLVKENMGLMKLIME 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of MELO3C004971 vs. NCBI nr
Match: gi|595838662|ref|XP_007207697.1| (hypothetical protein PRUPE_ppa024036mg [Prunus persica])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 1  MAKTSSIGSKMRNKLADITNSKTMRAHLEDENSFKASQTRKSVIDQLVEENMGLMKLIME 60
          MAK SS+GS MR KL DITN +T +A  +DE   +   T K  IDQL+ E M LM+L+ E
Sbjct: 1  MAKRSSLGSMMRKKLTDITNLQTAKAISKDEKPPEDCPTDKDYIDQLMRERMTLMRLVSE 60

Query: 61 RKY 64
          RKY
Sbjct: 61 RKY 63

The following BLAST results are available for this feature:

BLAST of MELO3C004971 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSM0_CUCSA	5.1e-21	90.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097670 PE=4 SV=1	[more]
M5W6D6_PRUPE	8.5e-08	53.97	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024036mg PE=4 SV=1	[more]

BLAST of MELO3C004971 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072061\|ref\|XP_008463238.1\|	4.2e-24	100.00	PREDICTED: uncharacterized protein LOC103501433 isoform X2 [Cucumis melo]	[more]
gi\|659072063\|ref\|XP_008463245.1\|	4.2e-24	100.00	PREDICTED: uncharacterized protein LOC103501433 isoform X3 [Cucumis melo]	[more]
gi\|659072059\|ref\|XP_008463230.1\|	4.2e-24	100.00	PREDICTED: uncharacterized protein LOC103501433 isoform X1 [Cucumis melo]	[more]
gi\|449459158\|ref\|XP_004147313.1\|	7.4e-21	90.16	PREDICTED: uncharacterized protein LOC101205365 [Cucumis sativus]	[more]
gi\|595838662\|ref\|XP_007207697.1\|	1.2e-07	53.97	hypothetical protein PRUPE_ppa024036mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004971T1	MELO3C004971T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004971	Csa1G097670	Cucumber (Chinese Long) v2	cumeB015
MELO3C004971	ClCG03G002610	Watermelon (Charleston Gray)	mewcgB149
MELO3C004971	Cla97C03G053670	Watermelon (97103) v2	mewmbB153
MELO3C004971	CSPI01G13170	Wild cucumber (PI 183967)	cpimeB011
MELO3C004971	Cucsa.207680	Cucumber (Gy14) v1	cgymeB374
MELO3C004971	CmaCh01G005210	Cucurbita maxima (Rimu)	cmameB391
MELO3C004971	CmoCh01G005530	Cucurbita moschata (Rifu)	cmomeB382
MELO3C004971	Cp4.1LG02g12680	Cucurbita pepo (Zucchini)	cpemeB490
MELO3C004971	CsGy1G013280	Cucumber (Gy14) v2	cgybmeB010
MELO3C004971	Carg12298	Silver-seed gourd	carmeB0449
MELO3C004971	CsaV3_1G013340	Cucumber (Chinese Long) v3	cucmeB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004971	Cucurbita moschata (Rifu)	cmomeB181
MELO3C004971	Watermelon (97103) v1	mewmB146
MELO3C004971	Cucurbita pepo (Zucchini)	cpemeB480
MELO3C004971	Silver-seed gourd	carmeB1038
MELO3C004971	Wax gourd	mewgoB174
MELO3C004971	Cucurbita maxima (Rimu)	cmameB194