MELO3C004843 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004843
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RecQ-mediated genome instability-like protein
Location	chr12 : 9046506 .. 9051427 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTTTTAAATTTAGAGCAATTTTGGAAGCAGCCGGACATGGACTACAGCCTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCTCACGCCACCGCCACTCTTAGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCCACATCCTTCATTTCTCCCCGTTTCTCACTATCCTCTCTCTAATCAGAGTTCTCCCACCAGGGGATCTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGAGCTCTCCCTCCCTCGCAACTTCCTTCTCCGCCCTTGGAGCCTCGGTATTTGCCCTACTACTTCCCCATTCTTTTTTTTGCTGCTGCATTTTGAGTTGGTTTCTCTCAATCTCTTTGTTTGTTTTTGTTCAGGGATGTACGTGATGGTTGTTGGCGCTTTTCTCTTCCGGACGAATGAACCGCCCTTTATTTCGGTGAGATTGAGATTTCATCCTTTCTTCCTTTTCTTCCTTATTAATGACTCTCTTGTGCTTGACATGTAGAGAAGAATTGAATTGTTTTTCCCCTGAACTTTTGTTTTCTTTTAAAGAGAAAATTAGTTGAAGAAACTTGTAAGACATCCTTGGTTGAAGATCATTGGTTTTCATCTATTGAGTTTTTTAAAAATACCTTTGGATGGGCATTTTCAAGGCCAGGGATTTCTTTATTCTCATTTCTCTATTACTTACATAGTTACATTTATGCAATATCCATTCAAAAGGACAAAGAAAATCCTTTGGGTTGATCATGTTCGAGCTTTCTTTTGAATCTTCGATTTGAATGCGAAGAGTGGTCTATGTTTCCTAACGAATTAAAATGTTCTGGAATGCGTAGTAAAAGATTCAAGTTTAGTTTTTGGATGATTGAACTGCATTTTCTTGAGACACTGGAATATTGATGGTTCCACTACTTGACACAAATTTATCGAATCGGTTATTATTAAGATGTATGCATCCCTTTGAAGATTACAGCCTAACTTCTCATATTACGTGTTGGAAATTTTGTTCAGTATCAGTGAATTTCATTCAATCTATGAAATTTTTGTTGCCTTCTTAAAAGAATATATTCTCCGTAGTGCCATTTTTCGTGCTCTTTTTCTATTTTTTATGAGTTTTTGCCGATAAGCCAGCTGCCATAGAAGCATGTTGGTGGATTATTCGGTACTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGATTGAATGAAAGATCTAATCCATGAAATTTCCAAGAGATACAAAATGAACCCATTTAATTGCAGGGTAGACAAGTTTTCTCCAATTTGCAAGGAAATTTAAACGGTCAATCTGTATCTGTATGCACTGTAGATTTTCATACCAAAATAGAGCATGGCAAACAACTAATTCAAGGACATCCTCAGAATATCTTTTTTTGACTTGAAAAGTTTTGTCGTCTCTCACATCCCAAAACTCCATAAAACCGCGCTTATCATACTTGACCATATTTGAGCCTTAGTAGCTTTGAAATGGTGATCTGTGAGAAACATGTTGATCCAATCAAGAGAGGCCAAAGAATCGTTCAGTATTTGCAGGTTTTTCTTTTAGTATTCAATAATATTGCTATTTCAATCTTAGAGATGGTTGACTCCACTTAATTTAAAGCAAGTTTAATCATATCAATTTCAGCATTTTATCTGTCTTTACCTCCTTTCTATTCATTTTTAAATACCACATCTTCATTTGCTGATATTCAACTTGTAGCTGTGAATCTGTGATGTTTTGTTTCATCAGCATTTTGTTTCCATATCCAATATTTAGGAGGAAAGATAGTGTTCATAACTAAATTACTTAATAGCATGGAGTTTTGGTTTGATATCTACCATCAACAAGTAGTTAATTCTACAATTTTATGTTTGTATTAGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTATCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAGTTTTTGTAACTTGTTTTGTCGACCTAAAAGGTGTTGATTATTTTATTTTCATGTTAATCCTGCTATGAAAAATGCATCAATTTCTTGTAATCCTACAAATGGGTTATGATGGTCTTTCGATCTTGTAAGATCACAACTCAAGTAGAGAATCCGAGTATTATCCTCTCCTTTGGTAGACATAATTTTGAAAACACAAGTAGATAAGGATAAGCAGATAGGAAAGCCAATCCTCTTGCTTTGTGTATCTGATGATGTCAAAGAGAATTTTGTGATATACGTACACCATAGTAATTGGGGTTAATTCTCGGTTT

mRNA sequence

AGCTTTTTAAATTTAGAGCAATTTTGGAAGCAGCCGGACATGGACTACAGCCTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCTCACGCCACCGCCACTCTTAGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATCTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGAGCTCTCCCTCCCTCGCAACTTCCTTCTCCGCCCTTGGAGCCTCGGGATGTACGTGATGGTTGTTGGCGCTTTTCTCTTCCGGACGAATGAACCGCCCTTTATTTCGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTATCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAGTTTTTGTAACTTGTTTTGTCGACCTAAAAGGTGTTGATTATTTTATTTTCATGTTAATCCTGCTATGAAAAATGCATCAATTTCTTGTAATCCTACAAATGGGTTATGATGGTCTTTCGATCTTGTAAGATCACAACTCAAGTAGAGAATCCGAGTATTATCCTCTCCTTTGGTAGACATAATTTTGAAAACACAAGTAGATAAGGATAAGCAGATAGGAAAGCCAATCCTCTTGCTTTGTGTATCTGATGATGTCAAAGAGAATTTTGTGATATACGTACACCATAGTAATTGGGGTTAATTCTCGGTTT

Coding sequence (CDS)

ATGGACTACAGCCTAGCAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCTCACGCCACCGCCACTCTTAGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATCTTGGTCTCCGTCGACAAAGAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGAGCTCTCCCTCCCTCGCAACTTCCTTCTCCGCCCTTGGAGCCTCGGGATGTACGTGATGGTTGTTGGCGCTTTTCTCTTCCGGACGAATGAACCGCCCTTTATTTCGGTCCACAAGATTGTTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTATCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAGTTTTTGTAA

Protein sequence

MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTGTVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL*

Homology

[Close]

BLAST of MELO3C004843 vs. TrEMBL
Match: A0A0A0LVL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G137780 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL R+FLLRPWSLGMYVMVVGAFLFRTNE PFI VHKI+DLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FYEPLVE+FL
Sbjct: 121 EAYKLFYEPLVEDFL 135

[Close]

BLAST of MELO3C004843 vs. TrEMBL
Match: A0A0B0NH03_GOSAR (RecQ-mediated instability 2 OS=Gossypium arboreum GN=F383_09243 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.8e-45
Identity = 93/135 (68.89%), Postives = 107/135 (79.26%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLC QLKDARGTPS +  TL GILFQR WLQG+LVS D E+  L+LDD TG
Sbjct: 1   MDYSLAALKLLCGQLKDARGTPSQSALTLGGILFQRVWLQGVLVSNDDED-HLLLDDSTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
            VEL+L  +F  R W  GMYVMVVG +  RT + P I VHKIVDLS  P+REAMWYLEV+
Sbjct: 61  IVELNLSGDFRQRQWKTGMYVMVVGGYFVRTGDIPVIKVHKIVDLSPFPDREAMWYLEVL 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FY+PL+EEF+
Sbjct: 121 EAYKLFYQPLIEEFI 134

[Close]

BLAST of MELO3C004843 vs. TrEMBL
Match: A0A0D2W9J7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G259000 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 93/135 (68.89%), Postives = 107/135 (79.26%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLC QLKDARGTPS +  TL GILFQR WLQG+LVS D E+  L+LDD TG
Sbjct: 1   MDYSLAALKLLCGQLKDARGTPSQSALTLGGILFQRVWLQGVLVSNDDEDC-LLLDDSTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
            VEL+L  +F  R W  GMYVMVVG +  RT + P I VHKIVDLS  P+REAMWYLEV+
Sbjct: 61  IVELNLSGDFRQRQWKTGMYVMVVGGYFVRTGDIPVIKVHKIVDLSPFPDREAMWYLEVL 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FY+PL+EEF+
Sbjct: 121 EAYKLFYQPLIEEFI 134

[Close]

BLAST of MELO3C004843 vs. TrEMBL
Match: A9PBC2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20150g PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 94/135 (69.63%), Postives = 106/135 (78.52%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLC QLKDA  TPS    TL GILFQRAWLQGILVS D + G+L+LDDGTG
Sbjct: 1   MDYSLAALKLLCVQLKDASETPSQNALTLGGILFQRAWLQGILVSNDGD-GRLLLDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
            +EL L  +F LR W  GMYVMVVG +  R  E P I VHK+VDLS  P+REAMWYLEVM
Sbjct: 61  VIELCLSPDFRLRHWDSGMYVMVVGGYFVRHGETPMIKVHKMVDLSAFPDREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FY+PL+EEF+
Sbjct: 121 EAYKLFYQPLIEEFM 134

[Close]

BLAST of MELO3C004843 vs. TrEMBL
Match: A0A0L9V6D5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g143800 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 92/134 (68.66%), Postives = 104/134 (77.61%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLC QLK A    S  + TL G+LFQRAWLQG+LVSV  + G L+LDDGTG
Sbjct: 1   MDYSLAALKLLCSQLKQAGEVASQNSYTLGGLLFQRAWLQGVLVSVS-DTGSLLLDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
            +ELSL   F  R W LGMYVMVVG ++ R  E P I +HKIVDLS SP+REAMWYLEV+
Sbjct: 61  LIELSLTGEFRHRSWQLGMYVMVVGGYVARAGELPMIKIHKIVDLSSSPDREAMWYLEVI 120

Query: 121 EAYKMFYEPLVEEF 135
           EAYKMFY+PLVEEF
Sbjct: 121 EAYKMFYQPLVEEF 133

[Close]

BLAST of MELO3C004843 vs. TAIR10
Match: AT1G08390.1 (AT1G08390.1 unknown protein)

HSP 1 Score: 178.3 bits (451), Expect = 3.1e-45
Identity = 85/136 (62.50%), Postives = 103/136 (75.74%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGK--LILDDG 60
           MDYSLAA+K+LC QL+DA+ TPS   A+L G+LFQRAWLQG+LV      G   L+LDDG
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLE 120
           TG +EL L  +F LR W  GMYVMVVG +  RT + P + VHK+VDLS SP+REAMWYLE
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDREAMWYLE 120

Query: 121 VMEAYKMFYEPLVEEF 135
           VM+AY++FYEPL++EF
Sbjct: 121 VMDAYRLFYEPLIQEF 136

[Close]

BLAST of MELO3C004843 vs. NCBI nr
Match: gi|659071863|ref|XP_008462275.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 273.5 bits (698), Expect = 2.0e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYKMFYEPLVEEFL
Sbjct: 121 EAYKMFYEPLVEEFL 135

[Close]

BLAST of MELO3C004843 vs. NCBI nr
Match: gi|659071859|ref|XP_008462259.1| (PREDICTED: uncharacterized protein LOC103500657 isoform X1 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 8.8e-66
Identity = 135/164 (82.32%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLPRNFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120
           TVELSLPRNFLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLPRNFLLRPWSLGICPTTSPFFFLLLHFELVSLNLFVCFCSGMYVMVVGAFLFRT 120

Query: 121 NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL 136
           NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL
Sbjct: 121 NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL 164

[Close]

BLAST of MELO3C004843 vs. NCBI nr
Match: gi|449443382|ref|XP_004139456.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
           TVELSL R+FLLRPWSLGMYVMVVGAFLFRTNE PFI VHKI+DLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FYEPLVE+FL
Sbjct: 121 EAYKLFYEPLVEDFL 135

[Close]

BLAST of MELO3C004843 vs. NCBI nr
Match: gi|449443380|ref|XP_004139455.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 8.0e-59
Identity = 123/164 (75.00%), Postives = 127/164 (77.44%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLPRNFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120
           TVELSL R+FLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFFCFCSGMYVMVVGAFLFRT 120

Query: 121 NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL 136
           NE PFI VHKI+DLSKSPNREAMWYLEVMEAYK+FYEPLVE+FL
Sbjct: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 164

[Close]

BLAST of MELO3C004843 vs. NCBI nr
Match: gi|1009114149|ref|XP_015873527.1| (PREDICTED: uncharacterized protein LOC107410594 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 199.5 bits (506), Expect = 3.7e-48
Identity = 97/135 (71.85%), Postives = 109/135 (80.74%), Query Frame = 1


Query: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60
           MDYSLAALKLLC QLK AR TPS +  TL GILFQRAWLQGILV V  +  +L+LDD TG
Sbjct: 1   MDYSLAALKLLCSQLKHARETPSQSALTLGGILFQRAWLQGILVYVSPDGDRLLLDDATG 60

Query: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120
             EL L  +F LRPW+ GMYV+VVGA++ RT EPP I VHKIVDLS  PNRE+MWYLEVM
Sbjct: 61  VAELHLSADFRLRPWNNGMYVLVVGAYVIRTGEPPMIKVHKIVDLSPFPNRESMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFL 136
           EAYK+FYEPLVEEF+
Sbjct: 121 EAYKLFYEPLVEEFV 135

The following BLAST results are available for this feature:

BLAST of MELO3C004843 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVL5_CUCSA	1.3e-63	91.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G137780 PE=4 SV=1	[more]
A0A0B0NH03_GOSAR	7.8e-45	68.89	RecQ-mediated instability 2 OS=Gossypium arboreum GN=F383_09243 PE=4 SV=1	[more]
A0A0D2W9J7_GOSRA	1.3e-44	68.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G259000 PE=4 SV=1	[more]
A9PBC2_POPTR	1.3e-44	69.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20150g PE=2 SV=1	[more]
A0A0L9V6D5_PHAAN	1.9e-43	68.66	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g143800 PE=4 SV=1	[more]

BLAST of MELO3C004843 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08390.1	3.1e-45	62.50	unknown protein	[more]

BLAST of MELO3C004843 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071863\|ref\|XP_008462275.1\|	2.0e-70	100.00	PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis melo]	[more]
gi\|659071859\|ref\|XP_008462259.1\|	8.8e-66	82.32	PREDICTED: uncharacterized protein LOC103500657 isoform X1 [Cucumis melo]	[more]
gi\|449443382\|ref\|XP_004139456.1\|	1.8e-63	91.11	PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativu...	[more]
gi\|449443380\|ref\|XP_004139455.1\|	8.0e-59	75.00	PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativu...	[more]
gi\|1009114149\|ref\|XP_015873527.1\|	3.7e-48	71.85	PREDICTED: uncharacterized protein LOC107410594 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU56976	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004843T1	MELO3C004843T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU56976	MU56976	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33962	FAMILY NOT NAMED	coord: 1..134 score: 2.0
None	No IPR available	PANTHER	PTHR33962:SF1	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2	coord: 1..134 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004843	Csa1G137780	Cucumber (Chinese Long) v2	cumeB015
MELO3C004843	Cla001055	Watermelon (97103) v1	mewmB162
MELO3C004843	ClCG01G013980	Watermelon (Charleston Gray)	mewcgB131
MELO3C004843	Cla97C01G012960	Watermelon (97103) v2	mewmbB134
MELO3C004843	Bhi08G000105	Wax gourd	mewgoB174
MELO3C004843	CSPI01G14090	Wild cucumber (PI 183967)	cpimeB011
MELO3C004843	Cucsa.200300	Cucumber (Gy14) v1	cgymeB365
MELO3C004843	CmaCh13G002670	Cucurbita maxima (Rimu)	cmameB194
MELO3C004843	CmoCh13G002740	Cucurbita moschata (Rifu)	cmomeB181
MELO3C004843	Lsi03G000670	Bottle gourd (USVL1VR-Ls)	lsimeB244
MELO3C004843	Cp4.1LG20g07330	Cucurbita pepo (Zucchini)	cpemeB480
MELO3C004843	CsGy1G014070	Cucumber (Gy14) v2	cgybmeB010
MELO3C004843	Carg23698	Silver-seed gourd	carmeB0171
MELO3C004843	CsaV3_1G014310	Cucumber (Chinese Long) v3	cucmeB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004843	Cucurbita maxima (Rimu)	cmameB148
MELO3C004843	Cucurbita moschata (Rifu)	cmomeB138
MELO3C004843	Cucurbita pepo (Zucchini)	cpemeB744