CsGy1G014070 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G014070
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	recQ-mediated genome instability protein 2
Location	Chr1 : 9719540 .. 9720281 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTACCTTAATGCTTAAACTTAATGGACGTTGAATAACAAAATTACCGAAATTACTCACGACATAATATATATATATATATATATATGCAATAGAATGCTATCTCGGTCTTTGATAAATGTACTACTAGGAAATTTTGCAACTATTGGGTTACATTTGCTATGTATTTAAAGAACAGCCAAGTTTCTTTTTAAAAAATTTAGAGCAATTTTGGAAGAAGACGGACATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGTGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCAACATCCTTCATTTCTCCCCCTTTCTCACAATCCTTCTCTCTAATCAACAGTTCTCTCACCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGTATTTTCCCTACTACTTCCCCGTTCTCTTTTTTGCTGCTGCATTTTGAGTTGGATTCTCTCGCTTTCTTTGTTTGTTTTTGTTCAGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTGAGATTGAGATTTCCTCCTTTCTTCCTTATTAACGACTCTCTTGTGCTTGACATGTAG

mRNA sequence

ATTTTACCTTAATGCTTAAACTTAATGGACGTTGAATAACAAAATTACCGAAATTACTCACGACATAATATATATATATATATATATATGCAATAGAATGCTATCTCGGTCTTTGATAAATGTACTACTAGGAAATTTTGCAACTATTGGGTTACATTTGCTATGTATTTAAAGAACAGCCAAGTTTCTTTTTAAAAAATTTAGAGCAATTTTGGAAGAAGACGGACATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGTGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTGAGATTGAGATTTCCTCCTTTCTTCCTTATTAACGACTCTCTTGTGCTTGACATGTAG

Coding sequence (CDS)

ATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGTGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTGAGATTGAGATTTCCTCCTTTCTTCCTTATTAACGACTCTCTTGTGCTTGACATGTAG

Protein sequence

MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVRLRFPPFFLINDSLVLDM

Homology

[Close]

BLAST of CsGy1G014070 vs. NCBI nr
Match: XP_004139456.1 (PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus] >KGN64872.1 hypothetical protein Csa_1G137780 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 7.3e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 100
           TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 99

[Close]

BLAST of CsGy1G014070 vs. NCBI nr
Match: XP_004139455.1 (PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 3.2e-44
Identity = 99/128 (77.34%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSL-----------------------------GMYVMVVGAFLFRT 100
           TVELSLSRDFLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFFCFCSGMYVMVVGAFLFRT 120

[Close]

BLAST of CsGy1G014070 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 100
           TVELSL R+FLLRPWSLGMYVMVVGAFLFRTNE PFI V
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISV 99

[Close]

BLAST of CsGy1G014070 vs. NCBI nr
Match: XP_022964664.1 (uncharacterized protein LOC111464675 isoform X2 [Cucurbita moschata])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 82/115 (71.30%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQL DAR  PS+  A LGGILFQRAWLQGILV VD++NGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVRLR----FPPFFLIND 112
           TVELSLS DF  RPWSLGMYVMVVGA++ RTNE P I+  +R    FP F  + D
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNE-PSIIAVVRVFKLFPMFMGVVD 114

[Close]

BLAST of CsGy1G014070 vs. NCBI nr
Match: XP_023519122.1 (uncharacterized protein LOC111782580 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 82/115 (71.30%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQL DAR  PS+  A LGGILFQRAWLQGILV VD++NGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVRLR----FPPFFLIND 112
           TVELSLS DF  RPWSLGMYVMVVGA++ RTNE P I+  +R    FP F  + D
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNE-PSIIAVVRVVKLFPMFMGVVD 114

[Close]

BLAST of CsGy1G014070 vs. TAIR10
Match: AT1G08390.1 (unknown protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-28
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGK--LILDDA 60
           MDYSL A+K+LC QL+DA+ TPS   A+LGG+LFQRAWLQG+LV      G   L+LDD 
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 100
           TG +EL L+ DF LR W  GMYVMVVG +  RT ++P + V
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLLKV 101

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BLAST of CsGy1G014070 vs. TrEMBL
Match: tr|A0A0A0LVL5|A0A0A0LVL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G137780 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 100
           TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 99

[Close]

BLAST of CsGy1G014070 vs. TrEMBL
Match: tr|A0A1S3CGI5|A0A1S3CGI5_CUCME (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.8e-43
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 100
           TVELSL R+FLLRPWSLGMYVMVVGAFLFRTNE PFI V
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISV 99

[Close]

BLAST of CsGy1G014070 vs. TrEMBL
Match: tr|A0A1Q3C9I0|A0A1Q3C9I0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20196 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 67/99 (67.68%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDAR TPS      G ILFQRAWLQGILVS ++E+G+L+LDD TG
Sbjct: 1   MDYSLAALKLLCAQLKDARETPSQNAMTWGDILFQRAWLQGILVS-NEEDGRLLLDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 100
            V+LSLS +F  R W  GMYVMVVG F FRT+E+P I V
Sbjct: 61  VVQLSLSPEFRQRQWDAGMYVMVVGGFFFRTHEIPMIKV 98

[Close]

BLAST of CsGy1G014070 vs. TrEMBL
Match: tr|A0A061GWQ6|A0A061GWQ6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_041541 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDAR TPS     LGGILFQRAWLQGIL+S D ++ +L+LDD TG
Sbjct: 1   MDYSLAALKLLCGQLKDARETPSQNALTLGGILFQRAWLQGILISND-DDDRLLLDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVRLR 103
            VELSLS DF  R W  GMYVMVVG +  RT +LP I V +R
Sbjct: 61  IVELSLSGDFRQRQWKKGMYVMVVGGYFVRTGDLPVIKVFIR 101

[Close]

BLAST of CsGy1G014070 vs. TrEMBL
Match: tr|A0A2H5QML5|A0A2H5QML5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_244290 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.1e-28
Identity = 62/99 (62.63%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDAR +PS     LGGILFQR WLQG+LVS   ++G+L+LDD TG
Sbjct: 1   MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVV 100
            V++ LS DF +R W+ GMYVMVVG F+ RT+++P I V
Sbjct: 61  VVQIYLSGDFRIRRWNTGMYVMVVGGFVIRTDDIPVIKV 99

The following BLAST results are available for this feature:

BLAST of CsGy1G014070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139456.1	7.3e-49	100.00	PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativu...	[more]
XP_004139455.1	3.2e-44	77.34	PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativu...	[more]
XP_008462275.1	1.0e-42	90.91	PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo]	[more]
XP_022964664.1	1.3e-34	71.30	uncharacterized protein LOC111464675 isoform X2 [Cucurbita moschata]	[more]
XP_023519122.1	1.3e-34	71.30	uncharacterized protein LOC111782580 isoform X3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G014070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08390.1	2.3e-28	57.43	unknown protein	[more]

BLAST of CsGy1G014070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G014070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVL5\|A0A0A0LVL5_CUCSA	4.9e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G137780 PE=4 SV=1	[more]
tr\|A0A1S3CGI5\|A0A1S3CGI5_CUCME	6.8e-43	90.91	recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC1035006...	[more]
tr\|A0A1Q3C9I0\|A0A1Q3C9I0_CEPFO	3.6e-28	67.68	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20196 PE=4...	[more]
tr\|A0A061GWQ6\|A0A061GWQ6_THECC	6.2e-28	66.67	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_041541 PE=4 SV=1	[more]
tr\|A0A2H5QML5\|A0A2H5QML5_CITUN	8.1e-28	62.63	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_244290 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032245	RMI2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G014070.1	CsGy1G014070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032245	RecQ-mediated genome instability protein 2	PFAM	PF16100	RMI2	coord: 7..91 e-value: 8.1E-18 score: 64.4
IPR032245	RecQ-mediated genome instability protein 2	PANTHER	PTHR33962	FAMILY NOT NAMED	coord: 1..98
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 5..101 e-value: 3.3E-15 score: 57.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G014070	Cla001055	Watermelon (97103) v1	cgybwmB047
CsGy1G014070	Csa1G137780	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G014070	MELO3C004843	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G014070	ClCG01G013980	Watermelon (Charleston Gray)	cgybwcgB014
CsGy1G014070	CSPI01G14090	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G014070	CmaCh13G002670	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G014070	CmoCh13G002740	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G014070	Lsi03G000670	Bottle gourd (USVL1VR-Ls)	cgyblsiB041
CsGy1G014070	Cp4.1LG20g07330	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G014070	MELO3C004843.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G014070	CsaV3_1G014310	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G014070	Cla97C01G012960	Watermelon (97103) v2	cgybwmbB003
CsGy1G014070	Bhi08G000105	Wax gourd	cgybwgoB046
CsGy1G014070	Carg23698	Silver-seed gourd	carcgybB0180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G014070	Watermelon (97103) v2	cgybwmbB026
CsGy1G014070	Cucurbita maxima (Rimu)	cgybcmaB058
CsGy1G014070	Cucurbita maxima (Rimu)	cgybcmaB123
CsGy1G014070	Cucurbita moschata (Rifu)	cgybcmoB054
CsGy1G014070	Cucurbita moschata (Rifu)	cgybcmoB113
CsGy1G014070	Cucurbita pepo (Zucchini)	cgybcpeB142
CsGy1G014070	Watermelon (Charleston Gray)	cgybwcgB027
CsGy1G014070	Watermelon (97103) v1	cgybwmB067