Csa1G137780 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G137780
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	OB-fold nucleic acid binding domain containing protein, expressed
Location	Chr1 : 9574475 .. 9576800 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTCAAAAAAAATTTAGAGCAATTTTGGAAGAAGACGGACATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCAACATCCTTCATTTCTCCCCCTTTCTCACAATCCTTCTCTCTAATCAACAGTTCTCTCACCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGTATTTTCCCTACTACTTCCCCGTTCTCTTTTTTGCTGCTGCATTTTGAGTTGGATTCTCTCGCTTTCTTTTTTTGTTTTTGTTCAGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTGAGATTGAGATTTCCTCCTTTCTTCCTTATTAACGACTCTCTTGTGCTTGACATGTAGAGAAGAATTGAAATTGTTTTTCCCAAGTTTTTATTTTCTTTTAAAGAGAAAGTTAGGTGAAGAAACTACTAAAACATCCTTGGTTGAAGATCATGGGTTTTCATCTATTAATTTTTTTTAAAACATCTTTGGACGGGCATTTTCAAGGCCAGGGATTTCCTTACTCTCATTTCTCTATTACTTACATTTATGTGACATCCATTCAAAAAGGACAAGAAAATCCTTTGGGTAAATCATGTTCGAGCTTTCTTATGAATCTTCGATTTGAATGCAATGAATGGTCTATGTTTCCTAACGAATTAAAATGTTTTGGAATGCATAGTAAAAAATTCATGTTTAGTTTTTGGATTATTGAACTGCATTTTCTTGAGACACTGGAACATTGATGGTTCCACTACTTGCCAGAAATTTATTGATTCCGTTATTGTTAAGATGTATGCATCCCTTTGAAGATCTCATTACAGCCTAACTTCTCTTATTACGTGTTGGAAATTTTGTTCGGTATCAGTGAATTTCATTCAATCTATGAAATCTTTGTTGCCTTCTTAAAAGAATATGTTCTCCGTGTAGTGCCATTTTTCGTTCTCTTTTACTATTTTTTATGAGTTTTGCAGATAACCCAACTGCCATAGAAGCATGTTGGTGGATTATTCATTATTTTTCTTTCATCTTTTCGTTTTTTTTTTTTTTTTTAGAGGAGGGCGTGGGGGATTAGAAACAATTACATTGATTGAACGAAAGATCTAATCCATGAAATTTCCGAGAGATACAAAATGAGCCCATTTAATTACAGGGTAGACAAAAGTTTTCTCCAATTTGAGAGGAACTTTAAACGGTCAATTTGTATCTGTATGCACCGTTGATTTTCACACCCAAATAGAGCATGAAAAACAACTAGTTCAAGGACATCCTCAGAATATCTTTTTTTATCCTGAAAAGTTTTGTTGTCTCTCACATTCAAAAACTCCATGAAACAGCCCTATCATACTTGACCATATTTGAGCCATAGTAGCTTTGAAATGGTGATCTGTGAGAAACATGTTGATCCAATCAAGAGAGGCCAAAGGATCATTCAGTATTTGCAGGTTTTTCTTTTAGTGTTCAATAATATTGCTATTGCTACCTTAGAGTTGGTTGACTCCTCTTAATTTAAAGCAAGTTTAATCAAATCAATTTCAGCATTTTATCTGTCTTTACCTCCTTTCTATTCATTTCTAAATATCACACCTTCATTTTCTGATATTCAACTCGTAGCTGTTAATCTGTGATGTTTTGTTTGATCAGCATTTTGTTTCCATATCCAATATTTAGGAGGAAAGATAGTGTTCATAACTAAGTTACTTATAGCATTTAGTTTTGTTTTGATATCTACCATCAACAAGTAGTTAATTGTACAATTTTATGTTTGTATTAGGTCCACAAGATTATTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAATTGTTCTATGAACCTCTTGTCGAAGACTTTTTGTAACTTGTTTTGTCGACCTAAAAGGTGATGATTATTTTATTTTTCATGTTAATCCTGCTATGAAAAATGCATAAATTTGCTGTAGTCCTACAAAAGGGTTATGATGGTCTTTAGACCTTACAAGATCACAACTCTTGTAGGATCTTGTAAGATCCCTTGGTAGGCATAATTGAGAAAACACAAGTAGATTAGGATAAGCAGATAGGAAAGCCAATCATCTTGCTTTGTGTATCCGATGATGTC

mRNA sequence

ATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTCCACAAGATTATTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAATTGTTCTATGAACCTCTTGTCGAAGACTTTTTGTAA

Coding sequence (CDS)

ATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTCCACAAGATTATTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAATTGTTCTATGAACCTCTTGTCGAAGACTTTTTGTAA

Protein sequence

MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL*

Homology

[Close]

BLAST of Csa1G137780 vs. TrEMBL
Match: A0A0A0LVL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G137780 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120
           TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120

Query: 121 EAYKLFYEPLVEDFL 136
           EAYKLFYEPLVEDFL
Sbjct: 121 EAYKLFYEPLVEDFL 135

[Close]

BLAST of Csa1G137780 vs. TrEMBL
Match: A0A0B0NH03_GOSAR (RecQ-mediated instability 2 OS=Gossypium arboreum GN=F383_09243 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 93/135 (68.89%), Postives = 108/135 (80.00%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDARGTPS     LGGILFQR WLQG+LVS D E+  L+LDD+TG
Sbjct: 1   MDYSLAALKLLCGQLKDARGTPSQSALTLGGILFQRVWLQGVLVSNDDED-HLLLDDSTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120
            VEL+LS DF  R W  GMYVMVVG +  RT ++P I VHKI+DLS  P+REAMWYLEV+
Sbjct: 61  IVELNLSGDFRQRQWKTGMYVMVVGGYFVRTGDIPVIKVHKIVDLSPFPDREAMWYLEVL 120

Query: 121 EAYKLFYEPLVEDFL 136
           EAYKLFY+PL+E+F+
Sbjct: 121 EAYKLFYQPLIEEFI 134

[Close]

BLAST of Csa1G137780 vs. TrEMBL
Match: A0A0D2W9J7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G259000 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.1e-45
Identity = 93/135 (68.89%), Postives = 108/135 (80.00%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDARGTPS     LGGILFQR WLQG+LVS D E+  L+LDD+TG
Sbjct: 1   MDYSLAALKLLCGQLKDARGTPSQSALTLGGILFQRVWLQGVLVSNDDEDC-LLLDDSTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120
            VEL+LS DF  R W  GMYVMVVG +  RT ++P I VHKI+DLS  P+REAMWYLEV+
Sbjct: 61  IVELNLSGDFRQRQWKTGMYVMVVGGYFVRTGDIPVIKVHKIVDLSPFPDREAMWYLEVL 120

Query: 121 EAYKLFYEPLVEDFL 136
           EAYKLFY+PL+E+F+
Sbjct: 121 EAYKLFYQPLIEEFI 134

[Close]

BLAST of Csa1G137780 vs. TrEMBL
Match: A0A067DLR4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044496mg PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 91/142 (64.08%), Postives = 110/142 (77.46%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDAR +PS     LGGILFQR WLQG+LVS   ++G+L+LDD TG
Sbjct: 1   MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLG-------MYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREA 120
            V++ LS DF +R W+ G       MYVMVVG F+ RT+++P I VHKI+DLS  P+REA
Sbjct: 61  VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREA 120

Query: 121 MWYLEVMEAYKLFYEPLVEDFL 136
           MWYLEVMEAYKLFY+PL+EDF+
Sbjct: 121 MWYLEVMEAYKLFYQPLIEDFV 142

[Close]

BLAST of Csa1G137780 vs. TrEMBL
Match: A9PBC2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20150g PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-44
Identity = 93/135 (68.89%), Postives = 105/135 (77.78%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDA  TPS     LGGILFQRAWLQGILVS D + G+L+LDD TG
Sbjct: 1   MDYSLAALKLLCVQLKDASETPSQNALTLGGILFQRAWLQGILVSNDGD-GRLLLDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120
            +EL LS DF LR W  GMYVMVVG +  R  E P I VHK++DLS  P+REAMWYLEVM
Sbjct: 61  VIELCLSPDFRLRHWDSGMYVMVVGGYFVRHGETPMIKVHKMVDLSAFPDREAMWYLEVM 120

Query: 121 EAYKLFYEPLVEDFL 136
           EAYKLFY+PL+E+F+
Sbjct: 121 EAYKLFYQPLIEEFM 134

[Close]

BLAST of Csa1G137780 vs. TAIR10
Match: AT1G08390.1 (AT1G08390.1 unknown protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-45
Identity = 84/136 (61.76%), Postives = 104/136 (76.47%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGK--LILDDA 60
           MDYSL A+K+LC QL+DA+ TPS   A+LGG+LFQRAWLQG+LV      G   L+LDD 
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLE 120
           TG +EL L+ DF LR W  GMYVMVVG +  RT ++P + VHK++DLS SP+REAMWYLE
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDREAMWYLE 120

Query: 121 VMEAYKLFYEPLVEDF 135
           VM+AY+LFYEPL+++F
Sbjct: 121 VMDAYRLFYEPLIQEF 136

[Close]

BLAST of Csa1G137780 vs. NCBI nr
Match: gi|449443382|ref|XP_004139456.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.0e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120
           TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120

Query: 121 EAYKLFYEPLVEDFL 136
           EAYKLFYEPLVEDFL
Sbjct: 121 EAYKLFYEPLVEDFL 135

[Close]

BLAST of Csa1G137780 vs. NCBI nr
Match: gi|449443380|ref|XP_004139455.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.8e-66
Identity = 135/164 (82.32%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120
           TVELSLSRDFLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFFCFCSGMYVMVVGAFLFRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 136
           NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL
Sbjct: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 164

[Close]

BLAST of Csa1G137780 vs. NCBI nr
Match: gi|659071863|ref|XP_008462275.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120
           TVELSL R+FLLRPWSLGMYVMVVGAFLFRTNE PFI VHKI+DLSKSPNREAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKLFYEPLVEDFL 136
           EAYK+FYEPLVE+FL
Sbjct: 121 EAYKMFYEPLVEEFL 135

[Close]

BLAST of Csa1G137780 vs. NCBI nr
Match: gi|659071859|ref|XP_008462259.1| (PREDICTED: uncharacterized protein LOC103500657 isoform X1 [Cucumis melo])

HSP 1 Score: 235.0 bits (598), Expect = 8.0e-59
Identity = 123/164 (75.00%), Postives = 127/164 (77.44%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120
           TVELSL R+FLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLPRNFLLRPWSLGICPTTSPFFFLLLHFELVSLNLFVCFCSGMYVMVVGAFLFRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 136
           NE PFI VHKI+DLSKSPNREAMWYLEVMEAYK+FYEPLVE+FL
Sbjct: 121 NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL 164

[Close]

BLAST of Csa1G137780 vs. NCBI nr
Match: gi|1009114149|ref|XP_015873527.1| (PREDICTED: uncharacterized protein LOC107410594 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 97/135 (71.85%), Postives = 108/135 (80.00%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLK AR TPS     LGGILFQRAWLQGILV V  +  +L+LDDATG
Sbjct: 1   MDYSLAALKLLCSQLKHARETPSQSALTLGGILFQRAWLQGILVYVSPDGDRLLLDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVM 120
             EL LS DF LRPW+ GMYV+VVGA++ RT E P I VHKI+DLS  PNRE+MWYLEVM
Sbjct: 61  VAELHLSADFRLRPWNNGMYVLVVGAYVIRTGEPPMIKVHKIVDLSPFPNRESMWYLEVM 120

Query: 121 EAYKLFYEPLVEDFL 136
           EAYKLFYEPLVE+F+
Sbjct: 121 EAYKLFYEPLVEEFV 135

The following BLAST results are available for this feature:

BLAST of Csa1G137780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVL5_CUCSA	1.4e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G137780 PE=4 SV=1	[more]
A0A0B0NH03_GOSAR	1.2e-45	68.89	RecQ-mediated instability 2 OS=Gossypium arboreum GN=F383_09243 PE=4 SV=1	[more]
A0A0D2W9J7_GOSRA	2.1e-45	68.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G259000 PE=4 SV=1	[more]
A0A067DLR4_CITSI	2.3e-44	64.08	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044496mg PE=4 SV=1	[more]
A9PBC2_POPTR	3.0e-44	68.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20150g PE=2 SV=1	[more]

BLAST of Csa1G137780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08390.1	1.1e-45	61.76	unknown protein	[more]

BLAST of Csa1G137780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443382\|ref\|XP_004139456.1\|	2.0e-70	100.00	PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativu...	[more]
gi\|449443380\|ref\|XP_004139455.1\|	8.8e-66	82.32	PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativu...	[more]
gi\|659071863\|ref\|XP_008462275.1\|	1.8e-63	91.11	PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis melo]	[more]
gi\|659071859\|ref\|XP_008462259.1\|	8.0e-59	75.00	PREDICTED: uncharacterized protein LOC103500657 isoform X1 [Cucumis melo]	[more]
gi\|1009114149\|ref\|XP_015873527.1\|	1.4e-47	71.85	PREDICTED: uncharacterized protein LOC107410594 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084872	cucumber EST collection version 3.0	transcribed_cluster
CU115126	cucumber EST collection version 3.0	transcribed_cluster
CU130443	cucumber EST collection version 3.0	transcribed_cluster
CU136640	cucumber EST collection version 3.0	transcribed_cluster
CU163688	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G137780.1	Csa1G137780.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU084872	CU084872	transcribed_cluster
CU136640	CU136640	transcribed_cluster
CU163688	CU163688	transcribed_cluster
CU130443	CU130443	transcribed_cluster
CU115126	CU115126	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33962	FAMILY NOT NAMED	coord: 1..134 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G137780	Cla001055	Watermelon (97103) v1	cuwmB047
Csa1G137780	MELO3C004843	Melon (DHL92) v3.5.1	cumeB015
Csa1G137780	ClCG01G013980	Watermelon (Charleston Gray)	cuwcgB014
Csa1G137780	Lsi03G000670	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G137780	MELO3C004843.2	Melon (DHL92) v3.6.1	cumedB010
Csa1G137780	Cla97C01G012960	Watermelon (97103) v2	cuwmbB002
Csa1G137780	Bhi08G000105	Wax gourd	cuwgoB049
Csa1G137780	CSPI01G14090	Wild cucumber (PI 183967)	cpicuB000
Csa1G137780	Cucsa.200300	Cucumber (Gy14) v1	cgycuB305
Csa1G137780	CmaCh13G002670	Cucurbita maxima (Rimu)	cmacuB203
Csa1G137780	CmoCh13G002740	Cucurbita moschata (Rifu)	cmocuB188
Csa1G137780	Cp4.1LG20g07330	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G137780	CsGy1G014070	Cucumber (Gy14) v2	cgybcuB001
Csa1G137780	Carg23698	Silver-seed gourd	carcuB0185

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G137780	Watermelon (97103) v2	cuwmbB026
Csa1G137780	Cucurbita maxima (Rimu)	cmacuB163
Csa1G137780	Cucurbita maxima (Rimu)	cmacuB579
Csa1G137780	Cucurbita moschata (Rifu)	cmocuB148
Csa1G137780	Watermelon (Charleston Gray)	cuwcgB028
Csa1G137780	Watermelon (97103) v1	cuwmB065
Csa1G137780	Cucurbita pepo (Zucchini)	cpecuB805
Csa1G137780	Cucurbita pepo (Zucchini)	cpecuB808
Csa1G137780	Bottle gourd (USVL1VR-Ls)	culsiB005