Cucsa.200300 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.200300
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RecQ-mediated instability 2
Location	scaffold01365 : 734756 .. 737592 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAATTTTGGAAGAAGACGGACATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGTGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCAACATCCTTCATTTCTCCCCCTTTCTCACAATCCTTCTCTCTAATCAACAGTTCTCTCACCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGTATTTTCCCTACTACTTCCCCGTTCTCTTTTTTGCTGCTGCATTTTGAGTTGGATTCTCTCGCTTTCTTTGTTTGTTTTTGTTCAGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTGAGATTGAGATTTCCTCCTTTCTTCCTTATTAACGACTCTCTTGTGCTTGACATGTAGAGAAGAATTGAAATTGTTTTTCCCAAGTTTTTATTTTCTTTTAAAGAGAAAGTTAGGTGAAGAAACTACTAAAACATCCTTGGTTGAAGATCATTGGTTTTCATCTATTAATTTTTTTTAAAACATCTTTGGACGGGCATTTTCAAGGCCAGGGATTTCCTTACTCTCATTTCTCTATTACTTACATTTATGTGACATCCATTCAAAAAGGACAAGAAAATCCTTTGGGTAAATCATGTTCGAGCTTTCTTATGAATCTTCGATTTGAATGCAATGAATGGTCTATGTTTCCTAACGAATTAAAATGTTTTGGAATGCATAGTAAAAAATTCATGTTTAGTTTTTGGATTATTGAACTGCATTTTCTTGAGACACTGGAACATTGATGGTTCCACTACTTGCCAGAAATTTATTGATTCCGTTATTGTTAAGATGTATGCATCCCTTTGAAGATCTCATTACAGCCTAACTTCTCTTATTACGTGTTGGAAATTTTGTTCGGTATCAGTGAATTTCATTCAATCTATGAAATCTTTGTTGCCTTCTTAAAAGAATATGTTCTCCGTGTAGTGCCATTTTTCGTTCTCTTTTACTATTTTTTATGAGTTTTGCAGATAACCCAACTGCCATAGAAGCATGTTGGTGGATTATTCATTATTTTTCTTTCATCTTTTCGTTTTTTTTTTTTAGAGGAGGGCGTGGGGGATTAGAAACAATTACATTGATTGAACGAAAGATCTAATCCATGAAATTTCCGAGAGATACAAAATGAGCCCATTTAATTACAGGGTAGACAAAAGTTTTCTCCAATTTGAAAGGAACTTTAAACGGTCAATTTGTATCTGTATGCACCGTTGATTTTCACACCCAAATAGAGCATGAAAAACAACTAGTTCAAGGACATCCTCAGAATATCTTTTTTTATCCTGAAAAGTTTTGTTGTCTCTCACATTCAAAAACTCCATGAAACAGCCCTATCATACTTGACCATATTTGAGCCATAGTAGCTTTGAAATGGTGATCTGTGAGAAACATGTTGATCCAATCAAGAGAGGCCAAAGGATCATTCAGTATTTGCAGGTTTTTCTTTTAGTGTTCAATAATATTGCTATTGCTACCTTAGAGTTGGTTGACTCCTCTTAATTTAAAGCAAGTTTAATCAAATCAATTTCAGCATTTTATCTGTCTTTACCTCCTTTCTATTCATTTCTAAATATCACACCTTCATTTTCTGATATTCAACTCGTAGCTGTTAATCTGTGATGTTTTGTTTGATCAGCATTTTGTTTCCATATCCAATATTTAGGAGGAAAGATAGTGTTCATAACTAAGTTACTCATAGCATTTAGTTTTGTTTTGATATCTACCATCAACAAGTAGTTAATTGTACAATTTTATGTTTGTATTAGGTCCACAAGATTATTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAATTGTTCTATGAACCTCTTGTCGAAGACTTTTTGTAACTTGTTTTGTCGACCTAAAAGGTGATGATTATTTTATTTTTCATGTTAATCCTGCTATGAAAAATGCATAAATTTGCTGTAGTCCTACAAAAGGGTTATGATGGTCTTTAGACCTTACAAGATCACAACTCTTGTAGGATCTTGTAAGATCCCTTGGTAGGCATAATTGAGAAAACACAAGTAGATTAGGATAAGCAGATAGGAAAGCCAATCCTCTTGCTTTGTGTATCCGATGATGTCAAAAGAGAATTTTGTGATATACATATCATAGTAATTGTGGTTAATTCTTGGTTTAATCTTTTAGTTTTTTTTCAGTATTTTTAAGCACTTAGAAAATGGTTAATGGAGGTTTTTTGGCATGTAATTGATAACTTTTTGATGTAGGACATATATACCTTCAATGCGGAGATGGATATGGAGAAATCCTTGGATTGGACCAAAAATGTAGAAATTCTTGGTGGGAAAATTTGGTACAAATGCACACATCACAAAACTTGTAAAGATTTTCAGATTGTAGATGTTATTTCATTCAAAAGGGGATGTTGTTTGCATGCCAAATACTTCTCTCTTTGGGAGCCTATAATTCATGGTATTCCTGTGGAGGCCTTACCAGGTATTGTGGTAGGGATAAAACCGTAGATGTCATATAATCGATATCGAACTCTTTGATGTACAAATATATAGACATATTGGTGGATACTTTCATCTTTGCTTTATTCGAAGATGTATTTTATTAGCCAAATAACAAAGGGCTCGATTCAAAACATTGAAGTATA

mRNA sequence

AGCAATTTTGGAAGAAGACGGACATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGTGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGTATTTTCCCTACTACTTCCCCGTTCTCTTTTTTGCTGCTGCATTTTGAGTTGGATTCTCTCGCTTTCTTTGTTTGTTTTTGTTCAGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTCCACAAGATTATTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAATTGTTCTATGAACCTCTTGTCGAAGACTTTTTGTAACTTGTTTTGTCGACCTAAAAGGACATATAtaccttcaatgcggagatggatatggagaaatccttggattggaccaaaaatgtagaaaTTCTTGGTgggaaaatttggtacaaatgcacacatcacaaaacttgtaaagattttcagattgtagatgttatttcattcaaaaggggatgttgtttgcatgccaaatacttctctctttgggagcctataattcatggtattcctgtggaggccttaccaggtattgtggtagggataaaacCGTAGATGTCATATAatcgatatcgaactctttgatgtacaaatatatagacatattggtggatactttcatCTTTGCTTTATTCGAAGATGTATTTTATTAGCCAAATAACAAAGGGCTCGATTCAAAACATTGAAGTATA

Coding sequence (CDS)

ATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATCTTGGTGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTCGGTATTTTCCCTACTACTTCCCCGTTCTCTTTTTTGCTGCTGCATTTTGAGTTGGATTCTCTCGCTTTCTTTGTTTGTTTTTGTTCAGGGATGTATGTGATGGTTGTTGGCGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTCCACAAGATTATTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAATTGTTCTATGAACCTCTTGTCGAAGACTTTTTGTAA

Protein sequence

MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL*

Homology

[Close]

BLAST of Cucsa.200300 vs. TrEMBL
Match: A0A0A0LVL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G137780 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.4e-66
Identity = 135/164 (82.32%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
           TVELSLSRDFLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLSRDFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
           NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL
Sbjct: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 135

[Close]

BLAST of Cucsa.200300 vs. TrEMBL
Match: A0A067DLR4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044496mg PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-43
Identity = 93/164 (56.71%), Postives = 113/164 (68.90%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDAR +PS     LGGILFQR WLQG+LVS   ++G+L+LDD TG
Sbjct: 1   MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
            V++ LS DF +R W+ G+F                       F   MYVMVVG F+ RT
Sbjct: 61  VVQIYLSGDFRIRRWNTGVF----------------------FFDFWMYVMVVGGFVIRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
           +++P I VHKI+DLS  P+REAMWYLEVMEAYKLFY+PL+EDF+
Sbjct: 121 DDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQPLIEDFV 142

[Close]

BLAST of Cucsa.200300 vs. TrEMBL
Match: A0A0B0NH03_GOSAR (RecQ-mediated instability 2 OS=Gossypium arboreum GN=F383_09243 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-41
Identity = 93/164 (56.71%), Postives = 109/164 (66.46%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDARGTPS     LGGILFQR WLQG+LVS D E+  L+LDD+TG
Sbjct: 1   MDYSLAALKLLCGQLKDARGTPSQSALTLGGILFQRVWLQGVLVSNDDED-HLLLDDSTG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
            VEL+LS DF  R W                              +GMYVMVVG +  RT
Sbjct: 61  IVELNLSGDFRQRQWK-----------------------------TGMYVMVVGGYFVRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
            ++P I VHKI+DLS  P+REAMWYLEV+EAYKLFY+PL+E+F+
Sbjct: 121 GDIPVIKVHKIVDLSPFPDREAMWYLEVLEAYKLFYQPLIEEFI 134

[Close]

BLAST of Cucsa.200300 vs. TrEMBL
Match: A0A0D2W9J7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G259000 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-41
Identity = 93/164 (56.71%), Postives = 109/164 (66.46%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDARGTPS     LGGILFQR WLQG+LVS D E+  L+LDD+TG
Sbjct: 1   MDYSLAALKLLCGQLKDARGTPSQSALTLGGILFQRVWLQGVLVSNDDEDC-LLLDDSTG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
            VEL+LS DF  R W                              +GMYVMVVG +  RT
Sbjct: 61  IVELNLSGDFRQRQWK-----------------------------TGMYVMVVGGYFVRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
            ++P I VHKI+DLS  P+REAMWYLEV+EAYKLFY+PL+E+F+
Sbjct: 121 GDIPVIKVHKIVDLSPFPDREAMWYLEVLEAYKLFYQPLIEEFI 134

[Close]

BLAST of Cucsa.200300 vs. TrEMBL
Match: A9PBC2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20150g PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.2e-40
Identity = 94/164 (57.32%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLKDA  TPS     LGGILFQRAWLQGILVS D + G+L+LDD TG
Sbjct: 1   MDYSLAALKLLCVQLKDASETPSQNALTLGGILFQRAWLQGILVSNDGD-GRLLLDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
            +EL LS DF LR W                              SGMYVMVVG +  R 
Sbjct: 61  VIELCLSPDFRLRHWD-----------------------------SGMYVMVVGGYFVRH 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
            E P I VHK++DLS  P+REAMWYLEVMEAYKLFY+PL+E+F+
Sbjct: 121 GETPMIKVHKMVDLSAFPDREAMWYLEVMEAYKLFYQPLIEEFM 134

[Close]

BLAST of Cucsa.200300 vs. TAIR10
Match: AT1G08390.1 (AT1G08390.1 unknown protein)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-41
Identity = 85/165 (51.52%), Postives = 107/165 (64.85%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGK--LILDDA 60
           MDYSL A+K+LC QL+DA+ TPS   A+LGG+LFQRAWLQG+LV      G   L+LDD 
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLF 120
           TG +EL L+ DF LR W                              SGMYVMVVG +  
Sbjct: 61  TGLLELGLTNDFALRQWK-----------------------------SGMYVMVVGVYQV 120

Query: 121 RTNELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDF 164
           RT ++P + VHK++DLS SP+REAMWYLEVM+AY+LFYEPL+++F
Sbjct: 121 RTGQIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYEPLIQEF 136

[Close]

BLAST of Cucsa.200300 vs. NCBI nr
Match: gi|449443380|ref|XP_004139455.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 5.8e-88
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
           TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFF CFCSGMYVMVVGAFLFRT
Sbjct: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFFCFCSGMYVMVVGAFLFRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
           NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL
Sbjct: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 164

[Close]

BLAST of Cucsa.200300 vs. NCBI nr
Match: gi|659071859|ref|XP_008462259.1| (PREDICTED: uncharacterized protein LOC103500657 isoform X1 [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 1.6e-77
Identity = 147/164 (89.63%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
           TVELSL R+FLLRPWSLGI PTTSPF FLLLHFEL SL  FVCFCSGMYVMVVGAFLFRT
Sbjct: 61  TVELSLPRNFLLRPWSLGICPTTSPFFFLLLHFELVSLNLFVCFCSGMYVMVVGAFLFRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
           NE PFI VHKI+DLSKSPNREAMWYLEVMEAYK+FYEPLVE+FL
Sbjct: 121 NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL 164

[Close]

BLAST of Cucsa.200300 vs. NCBI nr
Match: gi|449443382|ref|XP_004139456.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 135/164 (82.32%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG
Sbjct: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
           TVELSLSRDFLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLSRDFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
           NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL
Sbjct: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 135

[Close]

BLAST of Cucsa.200300 vs. NCBI nr
Match: gi|659071863|ref|XP_008462275.1| (PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 235.0 bits (598), Expect = 9.7e-59
Identity = 123/164 (75.00%), Postives = 127/164 (77.44%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLCRQLKDARGTPSH TA L GILFQRAWLQGILVSVDKENGKLILDD TG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
           TVELSL R+FLLRPWSL                             GMYVMVVGAFLFRT
Sbjct: 61  TVELSLPRNFLLRPWSL-----------------------------GMYVMVVGAFLFRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
           NE PFI VHKI+DLSKSPNREAMWYLEVMEAYK+FYEPLVE+FL
Sbjct: 121 NEPPFISVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEFL 135

[Close]

BLAST of Cucsa.200300 vs. NCBI nr
Match: gi|1009114149|ref|XP_015873527.1| (PREDICTED: uncharacterized protein LOC107410594 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 183.7 bits (465), Expect = 2.6e-43
Identity = 97/164 (59.15%), Postives = 109/164 (66.46%), Query Frame = 1


Query: 1   MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
           MDYSL ALKLLC QLK AR TPS     LGGILFQRAWLQGILV V  +  +L+LDDATG
Sbjct: 1   MDYSLAALKLLCSQLKHARETPSQSALTLGGILFQRAWLQGILVYVSPDGDRLLLDDATG 60

Query: 61  TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRT 120
             EL LS DF LRPW+                             +GMYV+VVGA++ RT
Sbjct: 61  VAELHLSADFRLRPWN-----------------------------NGMYVLVVGAYVIRT 120

Query: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 165
            E P I VHKI+DLS  PNRE+MWYLEVMEAYKLFYEPLVE+F+
Sbjct: 121 GEPPMIKVHKIVDLSPFPNRESMWYLEVMEAYKLFYEPLVEEFV 135

The following BLAST results are available for this feature:

BLAST of Cucsa.200300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVL5_CUCSA	7.4e-66	82.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G137780 PE=4 SV=1	[more]
A0A067DLR4_CITSI	3.0e-43	56.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044496mg PE=4 SV=1	[more]
A0A0B0NH03_GOSAR	3.7e-41	56.71	RecQ-mediated instability 2 OS=Gossypium arboreum GN=F383_09243 PE=4 SV=1	[more]
A0A0D2W9J7_GOSRA	6.4e-41	56.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G259000 PE=4 SV=1	[more]
A9PBC2_POPTR	3.2e-40	57.32	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20150g PE=2 SV=1	[more]

BLAST of Cucsa.200300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08390.1	1.1e-41	51.52	unknown protein	[more]

BLAST of Cucsa.200300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443380\|ref\|XP_004139455.1\|	5.8e-88	99.39	PREDICTED: recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativu...	[more]
gi\|659071859\|ref\|XP_008462259.1\|	1.6e-77	89.63	PREDICTED: uncharacterized protein LOC103500657 isoform X1 [Cucumis melo]	[more]
gi\|449443382\|ref\|XP_004139456.1\|	1.1e-65	82.32	PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativu...	[more]
gi\|659071863\|ref\|XP_008462275.1\|	9.7e-59	75.00	PREDICTED: recQ-mediated genome instability protein 2 isoform X2 [Cucumis melo]	[more]
gi\|1009114149\|ref\|XP_015873527.1\|	2.6e-43	59.15	PREDICTED: uncharacterized protein LOC107410594 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.200300.1	Cucsa.200300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33962	FAMILY NOT NAMED	coord: 1..85 score: 9.6E-37coord: 103..163 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.200300	Cla001055	Watermelon (97103) v1	cgywmB394
Cucsa.200300	Csa1G137780	Cucumber (Chinese Long) v2	cgycuB305
Cucsa.200300	MELO3C004843	Melon (DHL92) v3.5.1	cgymeB365
Cucsa.200300	ClCG01G013980	Watermelon (Charleston Gray)	cgywcgB371
Cucsa.200300	CSPI01G14090	Wild cucumber (PI 183967)	cgycpiB318
Cucsa.200300	CmaCh13G002670	Cucurbita maxima (Rimu)	cgycmaB0594
Cucsa.200300	CmoCh13G002740	Cucurbita moschata (Rifu)	cgycmoB0594
Cucsa.200300	Lsi03G000670	Bottle gourd (USVL1VR-Ls)	cgylsiB343
Cucsa.200300	Cp4.1LG20g07330	Cucurbita pepo (Zucchini)	cgycpeB0565
Cucsa.200300	MELO3C004843.2	Melon (DHL92) v3.6.1	cgymedB361
Cucsa.200300	CsaV3_1G014310	Cucumber (Chinese Long) v3	cgycucB322
Cucsa.200300	Cla97C01G012960	Watermelon (97103) v2	cgywmbB374
Cucsa.200300	Bhi08G000105	Wax gourd	cgywgoB422
Cucsa.200300	Carg23698	Silver-seed gourd	carcgyB0205

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.200300	Cucurbita maxima (Rimu)	cgycmaB0593
Cucsa.200300	Cucurbita moschata (Rifu)	cgycmoB0593
Cucsa.200300	Watermelon (97103) v1	cgywmB391
Cucsa.200300	Cucurbita pepo (Zucchini)	cgycpeB0566