MELO3C004080 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004080
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor RAX3
Location	chr5 : 22732520 .. 22733096 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACAAACTCAGCCATTGAAAGGCTTCAGCTTCAAATGCAGCTCCAACAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCGATGTCGGTCGAGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACAATAACCATGTTGATGGTGCGTCCTGCAGTGTAGCCACCCCTACGTTGGAAGGTTATGCCATGAATTGCACATTGATGAAGAGTCCGACGGTCAGTTCGGGCTCGATGGAGTTAGGAAGGTTGGAAGATGGGGGAGGAAGAAGGGGGGTTGAGTTTGTGAAGGAAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCTACCAAACTGTGGGAGACTGCTGCTTCGGTTGATGTTCAATTGGAAGGGATTTTTAAGGATTTCGAACAGCTTAGTCACAGCCTTTAGGGAAATTGATAGATGTTTGTAATTATTGTTACAAAAAATGATGACAGAGAGATGTTAATTACTAAGTTTTGTAAATTGTGTGAATAATAATGGTGCTATAATGCATGTGTATTTTGTTA

mRNA sequence

TGACAAACTCAGCCATTGAAAGGCTTCAGCTTCAAATGCAGCTCCAACAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCGATGTCGGTCGAGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACAATAACCATGTTGATGGTGCGTCCTGCAGTGTAGCCACCCCTACGTTGGAAGGTTATGCCATGAATTGCACATTGATGAAGAGTCCGACGGTCAGTTCGGGCTCGATGGAGTTAGGAAGGTTGGAAGATGGGGGAGGAAGAAGGGGGGTTGAGTTTGTGAAGGAAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCTACCAAACTGTGGGAGACTGCTGCTTCGGTTGATGTTCAATTGGAAGGGATTTTTAAGGATTTCGAACAGCTTAGTCACAGCCTTTAGGGAAATTGATAGATGTTTGTAATTATTGTTACAAAAAATGATGACAGAGAGATGTTAATTACTAAGTTTTGTAAATTGTGTGAATAATAATGGTGCTATAATGCATGTGTATTTTGTTA

Coding sequence (CDS)

ATGCAGCTCCAACAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCGATGTCGGTCGAGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACAATAACCATGTTGATGGTGCGTCCTGCAGTGTAGCCACCCCTACGTTGGAAGGTTATGCCATGAATTGCACATTGATGAAGAGTCCGACGGTCAGTTCGGGCTCGATGGAGTTAGGAAGGTTGGAAGATGGGGGAGGAAGAAGGGGGGTTGAGTTTGTGAAGGAAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCTACCAAACTGTGGGAGACTGCTGCTTCGGTTGATGTTCAATTGGAAGGGATTTTTAAGGATTTCGAACAGCTTAGTCACAGCCTTTAG

Protein sequence

MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTLMKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAASVDVQLEGIFKDFEQLSHSL*

Homology

[Close]

BLAST of MELO3C004080 vs. TrEMBL
Match: A0A0A0LMA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049900 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]

BLAST of MELO3C004080 vs. NCBI nr
Match: gi|659069863|ref|XP_008452158.1| (PREDICTED: myb-related protein 308 [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 8.2e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL
Sbjct: 156 MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 215

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLEGIFKDFEQLSHSL
Sbjct: 276 SVDVQLEGIFKDFEQLSHSL 295

[Close]

BLAST of MELO3C004080 vs. NCBI nr
Match: gi|449462729|ref|XP_004149093.1| (PREDICTED: transcription factor MYB32 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 156 MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 215

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 276 SVDVQLEEIFKEFEQFSHSL 295

[Close]

BLAST of MELO3C004080 vs. NCBI nr
Match: gi|700205982|gb|KGN61101.1| (hypothetical protein Csa_2G049900 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

The following BLAST results are available for this feature:

BLAST of MELO3C004080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMA5_CUCSA	1.3e-63	87.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049900 PE=4 SV=1	[more]

BLAST of MELO3C004080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069863\|ref\|XP_008452158.1\|	8.2e-75	100.00	PREDICTED: myb-related protein 308 [Cucumis melo]	[more]
gi\|449462729\|ref\|XP_004149093.1\|	1.9e-63	87.86	PREDICTED: transcription factor MYB32 [Cucumis sativus]	[more]
gi\|700205982\|gb\|KGN61101.1\|	1.9e-63	87.86	hypothetical protein Csa_2G049900 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU66631	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004080T1	MELO3C004080T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU66631	MU66631	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004080	Csa2G049900	Cucumber (Chinese Long) v2	cumeB139
MELO3C004080	Cla022852	Watermelon (97103) v1	mewmB422
MELO3C004080	ClCG11G012500	Watermelon (Charleston Gray)	mewcgB367
MELO3C004080	Cla97C11G218340	Watermelon (97103) v2	mewmbB369
MELO3C004080	Bhi06G001159	Wax gourd	mewgoB453
MELO3C004080	CSPI02G05670	Wild cucumber (PI 183967)	cpimeB139
MELO3C004080	Cucsa.089670	Cucumber (Gy14) v1	cgymeB105
MELO3C004080	CmaCh12G010060	Cucurbita maxima (Rimu)	cmameB176
MELO3C004080	CmoCh12G010150	Cucurbita moschata (Rifu)	cmomeB165
MELO3C004080	Lsi11G007310	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C004080	CsGy2G005840	Cucumber (Gy14) v2	cgybmeB120
MELO3C004080	CsaV3_2G008030	Cucumber (Chinese Long) v3	cucmeB141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004080	Silver-seed gourd	carmeB0062
MELO3C004080	Watermelon (97103) v2	mewmbB393
MELO3C004080	Wax gourd	mewgoB493
MELO3C004080	Cucurbita maxima (Rimu)	cmameB076
MELO3C004080	Cucurbita maxima (Rimu)	cmameB078
MELO3C004080	Cucurbita maxima (Rimu)	cmameB737
MELO3C004080	Cucurbita moschata (Rifu)	cmomeB069
MELO3C004080	Cucurbita moschata (Rifu)	cmomeB071
MELO3C004080	Cucurbita moschata (Rifu)	cmomeB725
MELO3C004080	Cucumber (Chinese Long) v2	cumeB074
MELO3C004080	Watermelon (Charleston Gray)	mewcgB398
MELO3C004080	Watermelon (97103) v1	mewmB435
MELO3C004080	Watermelon (97103) v1	mewmB441
MELO3C004080	Cucurbita pepo (Zucchini)	cpemeB103
MELO3C004080	Cucurbita pepo (Zucchini)	cpemeB342
MELO3C004080	Cucurbita pepo (Zucchini)	cpemeB779
MELO3C004080	Bottle gourd (USVL1VR-Ls)	lsimeB417