MELO3C004080T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C004080T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription factor RAX3
Locationchr5 : 22732520 .. 22733096 (-)
Sequence length577
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACAAACTCAGCCATTGAAAGGCTTCAGCTTCAAATGCAGCTCCAACAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCGATGTCGGTCGAGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACAATAACCATGTTGATGGTGCGTCCTGCAGTGTAGCCACCCCTACGTTGGAAGGTTATGCCATGAATTGCACATTGATGAAGAGTCCGACGGTCAGTTCGGGCTCGATGGAGTTAGGAAGGTTGGAAGATGGGGGAGGAAGAAGGGGGGTTGAGTTTGTGAAGGAAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCTACCAAACTGTGGGAGACTGCTGCTTCGGTTGATGTTCAATTGGAAGGGATTTTTAAGGATTTCGAACAGCTTAGTCACAGCCTTTAGGGAAATTGATAGATGTTTGTAATTATTGTTACAAAAAATGATGACAGAGAGATGTTAATTACTAAGTTTTGTAAATTGTGTGAATAATAATGGTGCTATAATGCATGTGTATTTTGTTA

mRNA sequence

TGACAAACTCAGCCATTGAAAGGCTTCAGCTTCAAATGCAGCTCCAACAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCGATGTCGGTCGAGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACAATAACCATGTTGATGGTGCGTCCTGCAGTGTAGCCACCCCTACGTTGGAAGGTTATGCCATGAATTGCACATTGATGAAGAGTCCGACGGTCAGTTCGGGCTCGATGGAGTTAGGAAGGTTGGAAGATGGGGGAGGAAGAAGGGGGGTTGAGTTTGTGAAGGAAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCTACCAAACTGTGGGAGACTGCTGCTTCGGTTGATGTTCAATTGGAAGGGATTTTTAAGGATTTCGAACAGCTTAGTCACAGCCTTTAGGGAAATTGATAGATGTTTGTAATTATTGTTACAAAAAATGATGACAGAGAGATGTTAATTACTAAGTTTTGTAAATTGTGTGAATAATAATGGTGCTATAATGCATGTGTATTTTGTTA

Coding sequence (CDS)

ATGCAGCTCCAACAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCGATGTCGGTCGAGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACAATAACCATGTTGATGGTGCGTCCTGCAGTGTAGCCACCCCTACGTTGGAAGGTTATGCCATGAATTGCACATTGATGAAGAGTCCGACGGTCAGTTCGGGCTCGATGGAGTTAGGAAGGTTGGAAGATGGGGGAGGAAGAAGGGGGGTTGAGTTTGTGAAGGAAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCTACCAAACTGTGGGAGACTGCTGCTTCGGTTGATGTTCAATTGGAAGGGATTTTTAAGGATTTCGAACAGCTTAGTCACAGCCTTTAG

Protein sequence

MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTLMKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAASVDVQLEGIFKDFEQLSHSL*
Homology
[Close]
BLAST of MELO3C004080T1 vs. TrEMBL
Match: A0A0A0LMA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049900 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1 

Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]
BLAST of MELO3C004080T1 vs. NCBI nr
Match: gi|659069863|ref|XP_008452158.1| (PREDICTED: myb-related protein 308 [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 8.2e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL
Sbjct: 156 MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 215

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLEGIFKDFEQLSHSL
Sbjct: 276 SVDVQLEGIFKDFEQLSHSL 295

[Close]
BLAST of MELO3C004080T1 vs. NCBI nr
Match: gi|449462729|ref|XP_004149093.1| (PREDICTED: transcription factor MYB32 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1 

Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 156 MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 215

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 276 SVDVQLEEIFKEFEQFSHSL 295

[Close]
BLAST of MELO3C004080T1 vs. NCBI nr
Match: gi|700205982|gb|KGN61101.1| (hypothetical protein Csa_2G049900 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1 

Query: 1   MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEGIFKDFEQLSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

The following BLAST results are available for this feature:
BLAST of MELO3C004080T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMA5_CUCSA1.3e-6387.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049900 PE=4 SV=1[more]
BLAST of MELO3C004080T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069863|ref|XP_008452158.1|8.2e-75100.00PREDICTED: myb-related protein 308 [Cucumis melo][more]
gi|449462729|ref|XP_004149093.1|1.9e-6387.86PREDICTED: transcription factor MYB32 [Cucumis sativus][more]
gi|700205982|gb|KGN61101.1|1.9e-6387.86hypothetical protein Csa_2G049900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C004080MELO3C004080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C004080T1MELO3C004080T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C004080T1.cds1MELO3C004080T1.cds1CDS