Csa2G049900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G049900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 4103938 .. 4104462 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAGGGAAATTAAATGATGTTTGTAATTATTGTTACAAAAATGATGAGAGAGAGAGAGAGATGTTAATTACTAAGTTTTGTAAATTGTGTGAATAATAATGGGTGT

mRNA sequence

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

Coding sequence (CDS)

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

Protein sequence

MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRSMKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAASVDVQLEEIFKEFEQFSHSL*
Homology
[Close]
BLAST of Csa2G049900 vs. TrEMBL
Match: A0A0A0LMA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049900 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.3e-76
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]
BLAST of Csa2G049900 vs. NCBI nr
Match: gi|700205982|gb|KGN61101.1| (hypothetical protein Csa_2G049900 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 3.3e-76
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]
BLAST of Csa2G049900 vs. NCBI nr
Match: gi|449462729|ref|XP_004149093.1| (PREDICTED: transcription factor MYB32 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 3.3e-76
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 156 MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 276 SVDVQLEEIFKEFEQFSHSL 295

[Close]
BLAST of Csa2G049900 vs. NCBI nr
Match: gi|659069863|ref|XP_008452158.1| (PREDICTED: myb-related protein 308 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1 

Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 156 MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 276 SVDVQLEGIFKDFEQLSHSL 295

The following BLAST results are available for this feature:
BLAST of Csa2G049900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMA5_CUCSA2.3e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049900 PE=4 SV=1[more]
BLAST of Csa2G049900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205982|gb|KGN61101.1|3.3e-76100.00hypothetical protein Csa_2G049900 [Cucumis sativus][more]
gi|449462729|ref|XP_004149093.1|3.3e-76100.00PREDICTED: transcription factor MYB32 [Cucumis sativus][more]
gi|659069863|ref|XP_008452158.1|1.9e-6387.86PREDICTED: myb-related protein 308 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G049900.1Csa2G049900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G049900MELO3C004080Melon (DHL92) v3.5.1cumeB139
Csa2G049900ClCG11G012500Watermelon (Charleston Gray)cuwcgB103
Csa2G049900Lsi11G007310Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G049900MELO3C004080.2Melon (DHL92) v3.6.1cumedB132
Csa2G049900Cucsa.089670Cucumber (Gy14) v1cgycuB096
Csa2G049900CsGy2G005840Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G049900Silver-seed gourdcarcuB0060
Csa2G049900Silver-seed gourdcarcuB0805
Csa2G049900Watermelon (97103) v2cuwmbB109
Csa2G049900Watermelon (97103) v2cuwmbB143
Csa2G049900Watermelon (97103) v2cuwmbB150
Csa2G049900Wax gourdcuwgoB136
Csa2G049900Wax gourdcuwgoB212
Csa2G049900Wax gourdcuwgoB216
Csa2G049900Cucumber (Chinese Long) v2cucuB012
Csa2G049900Cucumber (Gy14) v1cgycuB098
Csa2G049900Cucurbita maxima (Rimu)cmacuB072
Csa2G049900Cucurbita maxima (Rimu)cmacuB076
Csa2G049900Cucurbita maxima (Rimu)cmacuB117
Csa2G049900Cucurbita maxima (Rimu)cmacuB167
Csa2G049900Cucurbita maxima (Rimu)cmacuB786
Csa2G049900Cucurbita moschata (Rifu)cmocuB064
Csa2G049900Cucurbita moschata (Rifu)cmocuB066
Csa2G049900Cucurbita moschata (Rifu)cmocuB152
Csa2G049900Cucurbita moschata (Rifu)cmocuB779
Csa2G049900Melon (DHL92) v3.5.1cumeB114
Csa2G049900Watermelon (Charleston Gray)cuwcgB149
Csa2G049900Watermelon (97103) v1cuwmB163
Csa2G049900Watermelon (97103) v1cuwmB169
Csa2G049900Watermelon (97103) v1cuwmB176
Csa2G049900Cucurbita pepo (Zucchini)cpecuB098
Csa2G049900Cucurbita pepo (Zucchini)cpecuB374
Csa2G049900Cucurbita pepo (Zucchini)cpecuB815
Csa2G049900Bottle gourd (USVL1VR-Ls)culsiB135
Csa2G049900Melon (DHL92) v3.6.1cumedB111