CsGy2G005840 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G005840
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription factor MYB36
Location	Chr2 : 4120892 .. 4121314 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

mRNA sequence

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

Coding sequence (CDS)

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

Protein sequence

MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRSMKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAASVDVQLEEIFKEFEQFSHSL

Homology

[Close]

BLAST of CsGy2G005840 vs. NCBI nr
Match: XP_004149093.1 (PREDICTED: transcription factor MYB32 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.5e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 156 MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 276 SVDVQLEEIFKEFEQFSHSL 295

[Close]

BLAST of CsGy2G005840 vs. NCBI nr
Match: KGN61101.1 (hypothetical protein Csa_2G049900 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.5e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]

BLAST of CsGy2G005840 vs. NCBI nr
Match: XP_008452158.1 (PREDICTED: transcription factor MYB36 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 156 MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 276 SVDVQLEGIFKDFEQLSHSL 295

[Close]

BLAST of CsGy2G005840 vs. NCBI nr
Match: XP_022965905.1 (transcription factor MYB36-like [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 50/140 (35.71%), Postives = 65/140 (46.43%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           +Q  Q+ FSF++ STLWPP       V+  G L N           G   LEG    C  
Sbjct: 147 LQGFQTAFSFDSTSTLWPP-------VSADGSLVN-----------GECSLEG----CTG 206

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
            KSP V SSS E                K M+  +ESL+WW  DFD  S  A+ LWET  
Sbjct: 207 -KSP-VGSSSAE----------------KEMNDCQESLFWWCNDFDTNSAAASNLWETTT 244

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           +  +Q + I ++FE   H+L
Sbjct: 267 A--LQSDGILQDFELLGHTL 244

[Close]

BLAST of CsGy2G005840 vs. NCBI nr
Match: XP_023537976.1 (transcription factor MYB36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 48/140 (34.29%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           +Q  Q+ FSF++ STLWPP       V+  G L N           G   LEG    C  
Sbjct: 147 LQGFQTAFSFDSTSTLWPP-------VSADGSLVN-----------GECNLEG----CTG 206

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
            KSP  SSS+                  K M+  +ESL+WW  DFDA S  A+ LWET +
Sbjct: 207 -KSPVGSSSA-----------------AKEMNDCQESLFWWCNDFDANSAAASNLWETTS 244

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           +  +Q + I ++FE   ++L
Sbjct: 267 A--LQSDGILQDFEVLGYTL 244

[Close]

BLAST of CsGy2G005840 vs. TrEMBL
Match: tr|A0A0A0LMA5|A0A0A0LMA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G049900 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]

BLAST of CsGy2G005840 vs. TrEMBL
Match: tr|A0A1S3BTZ9|A0A1S3BTZ9_CUCME (transcription factor MYB36 OS=Cucumis melo OX=3656 GN=LOC103493261 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 9.2e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 156 MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 276 SVDVQLEGIFKDFEQLSHSL 295

[Close]

BLAST of CsGy2G005840 vs. TrEMBL
Match: tr|A0A1U8N304|A0A1U8N304_GOSHI (transcription factor MYB36 OS=Gossypium hirsutum OX=3635 GN=LOC107944093 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 43/137 (31.39%), Postives = 66/137 (48.18%), Query Frame = 0


Query: 3   LHQSTFSFNNASTLWPPMPVGEVKVARTGQL--ANHNHVDGASCRVGTPMLEGYAMNCRS 62
           L    FSF N   LWP +   + KV   G    +  N V   +    TP+     ++ + 
Sbjct: 163 LQNPIFSFYNNPALWPNILPLQQKVTIQGASNGSTPNIVMEPAAAATTPLTGDTLVDSKP 222

Query: 63  M-KSPTVSS--SSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWE 122
           +   P VSS   +  +    G    G +  V G DG K+++ WW   FDAK  G++  W+
Sbjct: 223 VAMGPLVSSFRQAEVVDEFVGVQEGGEMAEVDGFDGLKDNMVWWSNGFDAKV-GSSNCWD 282

Query: 123 TAASVDVQLEEIFKEFE 135
           +A+SV VQ  E+FK++E
Sbjct: 283 SASSV-VQFNEMFKDYE 297

[Close]

BLAST of CsGy2G005840 vs. TrEMBL
Match: tr|A0A0D2VJS1|A0A0D2VJS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G246200 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.7e-04
Identity = 44/137 (32.12%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 3   LHQSTFSFNNASTLWPPMPVGEVKVARTGQL--ANHNHVDGASCRVGTPMLEGYAMNCRS 62
           L    FSF N   LWP +   + KV   G    +  N V   +    TP+     ++ + 
Sbjct: 163 LQNPIFSFYNNPALWPNILPLQQKVTIQGASNGSTPNIVMEPAAAATTPLTGDTLVDSKP 222

Query: 63  M-KSPTVSS--SSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWE 122
           +   P VSS      +    G    G +  V G DG K+S+ WW   FDAK  G++  W 
Sbjct: 223 VAMGPLVSSFRQGEVVDEFVGVQEGGQMAEVDGFDGLKDSMVWWSNGFDAKV-GSSNCWG 282

Query: 123 TAASVDVQLEEIFKEFE 135
           +A+SV VQ  E+FK++E
Sbjct: 283 SASSV-VQFNEMFKDYE 297

[Close]

BLAST of CsGy2G005840 vs. TrEMBL
Match: tr|A0A220IEE0|A0A220IEE0_GOSHI (MYB36 OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-04
Identity = 43/137 (31.39%), Postives = 65/137 (47.45%), Query Frame = 0


Query: 3   LHQSTFSFNNASTLWPPMPVGEVKVARTGQL--ANHNHVDGASCRVGTPMLEGYAMNCRS 62
           L    FSF N   LWP +   + KV   G    +  N V   +    TP+     ++ + 
Sbjct: 163 LQNPIFSFYNNPALWPNILPLQQKVTIQGASNGSTPNIVMEPAAAATTPLTGDTLVDSKP 222

Query: 63  M-KSPTVSS--SSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWE 122
           +   P VSS   +  +    G    G +  V G DG K+++ WW   FDAK  G++  W 
Sbjct: 223 VAMGPLVSSFRQAEVVDEFVGVQEGGEMAEVDGFDGLKDNMVWWSNGFDAKV-GSSNCWG 282

Query: 123 TAASVDVQLEEIFKEFE 135
           +A+SV VQ  E+FK++E
Sbjct: 283 SASSV-VQFNEMFKDYE 297

The following BLAST results are available for this feature:

BLAST of CsGy2G005840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149093.1	2.5e-75	100.00	PREDICTED: transcription factor MYB32 [Cucumis sativus]	[more]
KGN61101.1	2.5e-75	100.00	hypothetical protein Csa_2G049900 [Cucumis sativus]	[more]
XP_008452158.1	1.4e-62	87.86	PREDICTED: transcription factor MYB36 [Cucumis melo]	[more]
XP_022965905.1	1.4e-06	35.71	transcription factor MYB36-like [Cucurbita maxima]	[more]
XP_023537976.1	1.9e-06	34.29	transcription factor MYB36-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G005840 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G005840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G005840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMA5\|A0A0A0LMA5_CUCSA	1.6e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G049900 PE=4 SV=1	[more]
tr\|A0A1S3BTZ9\|A0A1S3BTZ9_CUCME	9.2e-63	87.86	transcription factor MYB36 OS=Cucumis melo OX=3656 GN=LOC103493261 PE=4 SV=1	[more]
tr\|A0A1U8N304\|A0A1U8N304_GOSHI	3.3e-04	31.39	transcription factor MYB36 OS=Gossypium hirsutum OX=3635 GN=LOC107944093 PE=4 SV...	[more]
tr\|A0A0D2VJS1\|A0A0D2VJS1_GOSRA	5.7e-04	32.12	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G246200 PE=4 ...	[more]
tr\|A0A220IEE0\|A0A220IEE0_GOSHI	9.7e-04	31.39	MYB36 OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G005840.1	CsGy2G005840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G005840	Csa2G049900	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G005840	MELO3C004080	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G005840	ClCG11G012500	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G005840	CSPI02G05670	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G005840	Lsi11G007310	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G005840	MELO3C004080.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G005840	CsaV3_2G008030	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G005840	Cla97C11G218340	Watermelon (97103) v2	cgybwmbB104
CsGy2G005840	Bhi06G001159	Wax gourd	cgybwgoB132

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G005840	Watermelon (97103) v2	cgybwmbB138
CsGy2G005840	Watermelon (97103) v2	cgybwmbB144
CsGy2G005840	Wax gourd	cgybwgoB204
CsGy2G005840	Wax gourd	cgybwgoB207
CsGy2G005840	Cucumber (Gy14) v2	cgybcgybB014
CsGy2G005840	Cucurbita maxima (Rimu)	cgybcmaB153
CsGy2G005840	Cucurbita maxima (Rimu)	cgybcmaB155
CsGy2G005840	Cucurbita maxima (Rimu)	cgybcmaB164
CsGy2G005840	Cucurbita maxima (Rimu)	cgybcmaB171
CsGy2G005840	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G005840	Cucurbita moschata (Rifu)	cgybcmoB145
CsGy2G005840	Cucurbita moschata (Rifu)	cgybcmoB149
CsGy2G005840	Cucurbita moschata (Rifu)	cgybcmoB153
CsGy2G005840	Cucurbita moschata (Rifu)	cgybcmoB157
CsGy2G005840	Cucurbita moschata (Rifu)	cgybcmoB164
CsGy2G005840	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G005840	Cucurbita pepo (Zucchini)	cgybcpeB164
CsGy2G005840	Cucurbita pepo (Zucchini)	cgybcpeB206
CsGy2G005840	Cucurbita pepo (Zucchini)	cgybcpeB209
CsGy2G005840	Cucurbita pepo (Zucchini)	cgybcpeB233
CsGy2G005840	Cucurbita pepo (Zucchini)	cgybcpeB265
CsGy2G005840	Cucumber (Chinese Long) v2	cgybcuB055
CsGy2G005840	Bottle gourd (USVL1VR-Ls)	cgyblsiB124
CsGy2G005840	Melon (DHL92) v3.5.1	cgybmeB098
CsGy2G005840	Watermelon (Charleston Gray)	cgybwcgB139
CsGy2G005840	Watermelon (Charleston Gray)	cgybwcgB147
CsGy2G005840	Watermelon (97103) v1	cgybwmB155
CsGy2G005840	Watermelon (97103) v1	cgybwmB160
CsGy2G005840	Watermelon (97103) v1	cgybwmB167
CsGy2G005840	Silver-seed gourd	carcgybB0061
CsGy2G005840	Silver-seed gourd	carcgybB0781
CsGy2G005840	Cucumber (Chinese Long) v3	cgybcucB063