CsGy2G005840.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G005840.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription factor MYB36
Location	Chr2 : 4120892 .. 4121314 (+)
Sequence length	423

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

mRNA sequence

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

Coding sequence (CDS)

ATGCAGCTCCATCAAAGCACTTTTTCTTTCAACAACGCCTCAACGCTCTGGCCTCCCATGCCGGTCGGGGAAGTTAAGGTAGCCCGAACTGGCCAATTGGCCAACCATAACCATGTTGATGGTGCCTCCTGTAGAGTAGGTACCCCTATGTTGGAAGGCTATGCCATGAATTGCAGGTCGATGAAGAGTCCGACGGTCAGTTCGAGCTCGACGGAGTTAGGAAGGTTGGAAGGTGGAGGAGGAAGAGGGGGGGTTGAGTTTGTGAAGGGAATGGATGGTTCGAAGGAGAGTTTGTATTGGTGGGGTTATGATTTTGATGCAAAATCTGGAGGAGCGACAAAACTGTGGGAGACGGCTGCTTCAGTTGATGTTCAATTGGAAGAGATTTTTAAGGAATTCGAACAGTTTAGTCACAGCCTTTAG

Protein sequence

MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRSMKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAASVDVQLEEIFKEFEQFSHSL

Homology

[Close]

BLAST of CsGy2G005840.1 vs. NCBI nr
Match: XP_004149093.1 (PREDICTED: transcription factor MYB32 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.5e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 156 MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 276 SVDVQLEEIFKEFEQFSHSL 295

[Close]

BLAST of CsGy2G005840.1 vs. NCBI nr
Match: KGN61101.1 (hypothetical protein Csa_2G049900 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.5e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]

BLAST of CsGy2G005840.1 vs. NCBI nr
Match: XP_008452158.1 (PREDICTED: transcription factor MYB36 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 156 MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 276 SVDVQLEGIFKDFEQLSHSL 295

[Close]

BLAST of CsGy2G005840.1 vs. NCBI nr
Match: XP_022965905.1 (transcription factor MYB36-like [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 50/140 (35.71%), Postives = 65/140 (46.43%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           +Q  Q+ FSF++ STLWPP       V+  G L N           G   LEG    C  
Sbjct: 147 LQGFQTAFSFDSTSTLWPP-------VSADGSLVN-----------GECSLEG----CTG 206

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
            KSP V SSS E                K M+  +ESL+WW  DFD  S  A+ LWET  
Sbjct: 207 -KSP-VGSSSAE----------------KEMNDCQESLFWWCNDFDTNSAAASNLWETTT 244

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           +  +Q + I ++FE   H+L
Sbjct: 267 A--LQSDGILQDFELLGHTL 244

[Close]

BLAST of CsGy2G005840.1 vs. NCBI nr
Match: XP_023537976.1 (transcription factor MYB36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 48/140 (34.29%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           +Q  Q+ FSF++ STLWPP       V+  G L N           G   LEG    C  
Sbjct: 147 LQGFQTAFSFDSTSTLWPP-------VSADGSLVN-----------GECNLEG----CTG 206

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
            KSP  SSS+                  K M+  +ESL+WW  DFDA S  A+ LWET +
Sbjct: 207 -KSPVGSSSA-----------------AKEMNDCQESLFWWCNDFDANSAAASNLWETTS 244

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           +  +Q + I ++FE   ++L
Sbjct: 267 A--LQSDGILQDFEVLGYTL 244

[Close]

BLAST of CsGy2G005840.1 vs. TrEMBL
Match: tr|A0A0A0LMA5|A0A0A0LMA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G049900 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS
Sbjct: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLEEIFKEFEQFSHSL
Sbjct: 121 SVDVQLEEIFKEFEQFSHSL 140

[Close]

BLAST of CsGy2G005840.1 vs. TrEMBL
Match: tr|A0A1S3BTZ9|A0A1S3BTZ9_CUCME (transcription factor MYB36 OS=Cucumis melo OX=3656 GN=LOC103493261 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 9.2e-63
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MQLHQSTFSFNNASTLWPPMPVGEVKVARTGQLANHNHVDGASCRVGTPMLEGYAMNCRS 60
           MQL QSTFSFNNASTLWPPM V EVKVARTGQLAN+NHVDGASC V TP LEGYAMNC  
Sbjct: 156 MQLQQSTFSFNNASTLWPPMSVEEVKVARTGQLANNNHVDGASCSVATPTLEGYAMNCTL 215

Query: 61  MKSPTVSSSSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWETAA 120
           MKSPTVSS S ELGRLE GGGR GVEFVK MDGSKESLYWWGYDFDAKSGGATKLWETAA
Sbjct: 216 MKSPTVSSGSMELGRLEDGGGRRGVEFVKEMDGSKESLYWWGYDFDAKSGGATKLWETAA 275

Query: 121 SVDVQLEEIFKEFEQFSHSL 141
           SVDVQLE IFK+FEQ SHSL
Sbjct: 276 SVDVQLEGIFKDFEQLSHSL 295

[Close]

BLAST of CsGy2G005840.1 vs. TrEMBL
Match: tr|A0A1U8N304|A0A1U8N304_GOSHI (transcription factor MYB36 OS=Gossypium hirsutum OX=3635 GN=LOC107944093 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 43/137 (31.39%), Postives = 66/137 (48.18%), Query Frame = 0


Query: 3   LHQSTFSFNNASTLWPPMPVGEVKVARTGQL--ANHNHVDGASCRVGTPMLEGYAMNCRS 62
           L    FSF N   LWP +   + KV   G    +  N V   +    TP+     ++ + 
Sbjct: 163 LQNPIFSFYNNPALWPNILPLQQKVTIQGASNGSTPNIVMEPAAAATTPLTGDTLVDSKP 222

Query: 63  M-KSPTVSS--SSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWE 122
           +   P VSS   +  +    G    G +  V G DG K+++ WW   FDAK  G++  W+
Sbjct: 223 VAMGPLVSSFRQAEVVDEFVGVQEGGEMAEVDGFDGLKDNMVWWSNGFDAKV-GSSNCWD 282

Query: 123 TAASVDVQLEEIFKEFE 135
           +A+SV VQ  E+FK++E
Sbjct: 283 SASSV-VQFNEMFKDYE 297

[Close]

BLAST of CsGy2G005840.1 vs. TrEMBL
Match: tr|A0A0D2VJS1|A0A0D2VJS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G246200 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.7e-04
Identity = 44/137 (32.12%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 3   LHQSTFSFNNASTLWPPMPVGEVKVARTGQL--ANHNHVDGASCRVGTPMLEGYAMNCRS 62
           L    FSF N   LWP +   + KV   G    +  N V   +    TP+     ++ + 
Sbjct: 163 LQNPIFSFYNNPALWPNILPLQQKVTIQGASNGSTPNIVMEPAAAATTPLTGDTLVDSKP 222

Query: 63  M-KSPTVSS--SSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWE 122
           +   P VSS      +    G    G +  V G DG K+S+ WW   FDAK  G++  W 
Sbjct: 223 VAMGPLVSSFRQGEVVDEFVGVQEGGQMAEVDGFDGLKDSMVWWSNGFDAKV-GSSNCWG 282

Query: 123 TAASVDVQLEEIFKEFE 135
           +A+SV VQ  E+FK++E
Sbjct: 283 SASSV-VQFNEMFKDYE 297

[Close]

BLAST of CsGy2G005840.1 vs. TrEMBL
Match: tr|A0A220IEE0|A0A220IEE0_GOSHI (MYB36 OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-04
Identity = 43/137 (31.39%), Postives = 65/137 (47.45%), Query Frame = 0


Query: 3   LHQSTFSFNNASTLWPPMPVGEVKVARTGQL--ANHNHVDGASCRVGTPMLEGYAMNCRS 62
           L    FSF N   LWP +   + KV   G    +  N V   +    TP+     ++ + 
Sbjct: 163 LQNPIFSFYNNPALWPNILPLQQKVTIQGASNGSTPNIVMEPAAAATTPLTGDTLVDSKP 222

Query: 63  M-KSPTVSS--SSTELGRLEGGGGRGGVEFVKGMDGSKESLYWWGYDFDAKSGGATKLWE 122
           +   P VSS   +  +    G    G +  V G DG K+++ WW   FDAK  G++  W 
Sbjct: 223 VAMGPLVSSFRQAEVVDEFVGVQEGGEMAEVDGFDGLKDNMVWWSNGFDAKV-GSSNCWG 282

Query: 123 TAASVDVQLEEIFKEFE 135
           +A+SV VQ  E+FK++E
Sbjct: 283 SASSV-VQFNEMFKDYE 297

The following BLAST results are available for this feature:

BLAST of CsGy2G005840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149093.1	2.5e-75	100.00	PREDICTED: transcription factor MYB32 [Cucumis sativus]	[more]
KGN61101.1	2.5e-75	100.00	hypothetical protein Csa_2G049900 [Cucumis sativus]	[more]
XP_008452158.1	1.4e-62	87.86	PREDICTED: transcription factor MYB36 [Cucumis melo]	[more]
XP_022965905.1	1.4e-06	35.71	transcription factor MYB36-like [Cucurbita maxima]	[more]
XP_023537976.1	1.9e-06	34.29	transcription factor MYB36-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G005840.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G005840.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G005840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMA5\|A0A0A0LMA5_CUCSA	1.6e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G049900 PE=4 SV=1	[more]
tr\|A0A1S3BTZ9\|A0A1S3BTZ9_CUCME	9.2e-63	87.86	transcription factor MYB36 OS=Cucumis melo OX=3656 GN=LOC103493261 PE=4 SV=1	[more]
tr\|A0A1U8N304\|A0A1U8N304_GOSHI	3.3e-04	31.39	transcription factor MYB36 OS=Gossypium hirsutum OX=3635 GN=LOC107944093 PE=4 SV...	[more]
tr\|A0A0D2VJS1\|A0A0D2VJS1_GOSRA	5.7e-04	32.12	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G246200 PE=4 ...	[more]
tr\|A0A220IEE0\|A0A220IEE0_GOSHI	9.7e-04	31.39	MYB36 OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G005840	CsGy2G005840	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G005840.1.exon.1	CsGy2G005840.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G005840.1.CDS.1	CsGy2G005840.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G005840.1	CsGy2G005840.1-protein	polypeptide