Lsi11G012440 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G012440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChloroplast signal recognition particle component
Locationchr11 : 21077728 .. 21078825 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCGTCTTCGTTAACCAGTCTCTCTCTCGCCTTAAACTTTCCCCTAAGCCCCCTCTCCCATTCCCTCCTTCCTCCTCTCGAATCCCCCATCTCAATCTCCGCCGTAACCTCAAACATTTCACTCCCTACGCCGTTCAAAGCGATCAACCCCTCACACAACAGACCCAGAAATCAGAAGACGATGGATCGTACGGCGAAGTCGATGGAATCATCGGCAGCCGTGCTCTGTCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGATGGGCATTCTCCATCATGGGTTCCTTCCGATTTCATCGCTAAAGATGTTGTCGCCGAGTACGAAACTCCTTGGTGGACCGCCGCCAAGAAAGCCGACGAATCTGCTCTGAAATCGCTTATAGATTCTGCCGACGGACGCGATGTCGACGCTGTGGATGAAGATGGGAGAACCGCTCTTCTGTTCGTTGCTGGACTTGGGTCTGATCCGTGTGTGAGAATGTTAGCGGAAGCCGGCGCGAATCTCGACCACCGTGATAACAGCGGCGGGTTTACAGCGTTGCATATGGCAGCTGGGTATGTGAAACCAGAGACGGTGGAGTTGTTAGTGGAATTGGGGGCGGATCCAGAAATTGAAGACGAAAAGGGTCGGACGCCATTGGTGTTGGCAAGGGAGATATTGAAAGCGACGCCAAGGGTTCAGTTTATGAGGAGATTGGGGTTGGAGAGAGTGATCGGAGCGGTGGAGAGAGTGGTTTATGAGTATGCAGAGGTGGAGGCATTGCTGGAGAAGAGAGGGAAGGGGGAGAATTTGGAGTATTTGGTGAAATGGAAAGACGGAGAGGATAATGAATGGGTGAAAGTGGGGTTGATTGCGGAGGATTTGGTGGCGGATTTTGAAGCAGGGTTGGAGTATGCGGTGGCGGAGGCGGTGGTCGGAAAAAGAGTTGGAGATGATGGGAAGATGGAGTATCTTGTTAAATGGACGGATATACAAGATGCCACGTGGGAGCCTCAGGCTAATGTGGATCCTGATTTGGTTAACGAGTATGAGAAGGCCCAGGCCCAACCCCAGGCCCAATCCAGTAATGGTAGTGCCCTTTGA

mRNA sequence

ATGGACGCCGTCTTCGTTAACCAGTCTCTCTCTCGCCTTAAACTTTCCCCTAAGCCCCCTCTCCCATTCCCTCCTTCCTCCTCTCGAATCCCCCATCTCAATCTCCGCCGTAACCTCAAACATTTCACTCCCTACGCCGTTCAAAGCGATCAACCCCTCACACAACAGACCCAGAAATCAGAAGACGATGGATCGTACGGCGAAGTCGATGGAATCATCGGCAGCCGTGCTCTGTCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGATGGGCATTCTCCATCATGGGTTCCTTCCGATTTCATCGCTAAAGATGTTGTCGCCGAGTACGAAACTCCTTGGTGGACCGCCGCCAAGAAAGCCGACGAATCTGCTCTGAAATCGCTTATAGATTCTGCCGACGGACGCGATGTCGACGCTGTGGATGAAGATGGGAGAACCGCTCTTCTGTTCGTTGCTGGACTTGGGTCTGATCCGTGTGTGAGAATGTTAGCGGAAGCCGGCGCGAATCTCGACCACCGTGATAACAGCGGCGGGTTTACAGCGTTGCATATGGCAGCTGGGTATGTGAAACCAGAGACGGTGGAGTTGTTAGTGGAATTGGGGGCGGATCCAGAAATTGAAGACGAAAAGGGTCGGACGCCATTGGTGTTGGCAAGGGAGATATTGAAAGCGACGCCAAGGGTTCAGTTTATGAGGAGATTGGGGTTGGAGAGAGTGATCGGAGCGGTGGAGAGAGTGGTTTATGAGTATGCAGAGGTGGAGGCATTGCTGGAGAAGAGAGGGAAGGGGGAGAATTTGGAGTATTTGGTGAAATGGAAAGACGGAGAGGATAATGAATGGGTGAAAGTGGGGTTGATTGCGGAGGATTTGGTGGCGGATTTTGAAGCAGGGTTGGAGTATGCGGTGGCGGAGGCGGTGGTCGGAAAAAGAGTTGGAGATGATGGGAAGATGGAGTATCTTGTTAAATGGACGGATATACAAGATGCCACGTGGGAGCCTCAGGCTAATGTGGATCCTGATTTGGTTAACGAGTATGAGAAGGCCCAGGCCCAACCCCAGGCCCAATCCAGTAATGGTAGTGCCCTTTGA

Coding sequence (CDS)

ATGGACGCCGTCTTCGTTAACCAGTCTCTCTCTCGCCTTAAACTTTCCCCTAAGCCCCCTCTCCCATTCCCTCCTTCCTCCTCTCGAATCCCCCATCTCAATCTCCGCCGTAACCTCAAACATTTCACTCCCTACGCCGTTCAAAGCGATCAACCCCTCACACAACAGACCCAGAAATCAGAAGACGATGGATCGTACGGCGAAGTCGATGGAATCATCGGCAGCCGTGCTCTGTCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGATGGGCATTCTCCATCATGGGTTCCTTCCGATTTCATCGCTAAAGATGTTGTCGCCGAGTACGAAACTCCTTGGTGGACCGCCGCCAAGAAAGCCGACGAATCTGCTCTGAAATCGCTTATAGATTCTGCCGACGGACGCGATGTCGACGCTGTGGATGAAGATGGGAGAACCGCTCTTCTGTTCGTTGCTGGACTTGGGTCTGATCCGTGTGTGAGAATGTTAGCGGAAGCCGGCGCGAATCTCGACCACCGTGATAACAGCGGCGGGTTTACAGCGTTGCATATGGCAGCTGGGTATGTGAAACCAGAGACGGTGGAGTTGTTAGTGGAATTGGGGGCGGATCCAGAAATTGAAGACGAAAAGGGTCGGACGCCATTGGTGTTGGCAAGGGAGATATTGAAAGCGACGCCAAGGGTTCAGTTTATGAGGAGATTGGGGTTGGAGAGAGTGATCGGAGCGGTGGAGAGAGTGGTTTATGAGTATGCAGAGGTGGAGGCATTGCTGGAGAAGAGAGGGAAGGGGGAGAATTTGGAGTATTTGGTGAAATGGAAAGACGGAGAGGATAATGAATGGGTGAAAGTGGGGTTGATTGCGGAGGATTTGGTGGCGGATTTTGAAGCAGGGTTGGAGTATGCGGTGGCGGAGGCGGTGGTCGGAAAAAGAGTTGGAGATGATGGGAAGATGGAGTATCTTGTTAAATGGACGGATATACAAGATGCCACGTGGGAGCCTCAGGCTAATGTGGATCCTGATTTGGTTAACGAGTATGAGAAGGCCCAGGCCCAACCCCAGGCCCAATCCAGTAATGGTAGTGCCCTTTGA

Protein sequence

MDAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLKHFTPYAVQSDQPLTQQTQKSEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPRVQFMRRLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQAQPQAQSSNGSAL
Homology
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BLAST of Lsi11G012440 vs. Swiss-Prot
Match: SR43C_ARATH (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2)

HSP 1 Score: 412.9 bits (1060), Expect = 3.6e-114
Identity = 225/362 (62.15%), Postives = 273/362 (75.41%), Query Frame = 1 

Query: 3   AVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLKHFTPY---AVQSD-QPLTQQTQ 62
           A+ ++QSLSR+KLSP        S+     L +RR    F      AVQ + +  T   +
Sbjct: 12  ALVIHQSLSRIKLSPPKSSSSSSSAFSPESLPIRRIELCFRGAICAAVQRNYEETTSSVE 71

Query: 63  KSEDD----GSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 122
           ++E+D     SYGEV+ IIGSR   +   MEYLI+WKDGHSPSWVPS +IA DVV+EYET
Sbjct: 72  EAEEDDESSSSYGEVNKIIGSRTAGEGA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLD 182
           PWWTAA+KADE AL  L++    RDVDAVDE+GRTALLFVAGLGSD CVR+LAEAGA+LD
Sbjct: 132 PWWTAARKADEQALSQLLED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPR---V 242
           HRD  GG TALHMAAGYV+PE VE LVELGAD E+EDE+G T L LAREILK TP+   +
Sbjct: 192 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 251

Query: 243 QFMRRLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAE 302
           QF RR+GLE+VI  +E  V+EYAEV+ ++EKRGKG+++EYLV+WKDG D EWVK   +AE
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVVGKRVGDDGK-MEYLVKWTDIQDATWEPQANVDPDLVNEYEK 353
           D+  D+E GLEYAVAE+V+GKRVGDDGK +EYLVKWTD+ DATWEPQ NVD  LV  Y++
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQQ 369

[Close]
BLAST of Lsi11G012440 vs. Swiss-Prot
Match: SR43C_ORYSJ (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 8.6e-92
Identity = 187/373 (50.13%), Postives = 243/373 (65.15%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLKHFTPYAVQSDQ--PLTQQTQ 60
           M+AV  + SLSRLK  P P     P+ S      LR   +  T  AV  DQ  P    ++
Sbjct: 1   MEAVLRHPSLSRLK-PPNPNAQRTPALSITVPFRLRLPNRRLTAAAVFQDQTNPRNPASK 60

Query: 61  KSEDDGSYGEVDGIIGSRALSD-----------ATGMEYLIKWKDGHSPSWVPSDFIAKD 120
             +DD +YGEVD I+ SR + +            T  EYL++WKDGH PSW+P++ IA D
Sbjct: 61  GGDDDEAYGEVDRIVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAEAIAAD 120

Query: 121 VVAEYETPWWTAAKKADESALKSLI-DSADGRDVDAVDEDGRTALLFVAGLGSDPCVRML 180
           VVAEYETPWWTAAKKAD + + +L+ D    RD DA D  GRTA+ F AGLGS+ CVR L
Sbjct: 121 VVAEYETPWWTAAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECVRAL 180

Query: 181 AEAGANLDHRDNSGG-FTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREIL 240
           AEAGA++   + +GG  T LH+A GY +P  V  L+ELGA+PE  D +GRTPL L +++L
Sbjct: 181 AEAGADVGRPERAGGGLTPLHIAVGYGRPAAVRALLELGAEPEAPDGQGRTPLELVQDVL 240

Query: 241 KATPR---VQFMRRLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNE 300
             TP+     F RRL LE     +E+ VYE+ EVE +++ RG+G+  EYLV+W+DG D E
Sbjct: 241 AKTPKGNPATFERRLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRDGGDRE 300

Query: 301 WVKVGLIAEDLVADFEAGLEYAVAEAVVGKR--VGDDGKMEYLVKWTDIQDATWEPQANV 354
           WV+   +AEDLV DF+AGLEYAVAEAVV KR     +GK EYLVKW DI++ATWEP  NV
Sbjct: 301 WVRAAWVAEDLVKDFDAGLEYAVAEAVVNKREAAEGEGKWEYLVKWVDIEEATWEPAENV 360

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BLAST of Lsi11G012440 vs. Swiss-Prot
Match: ANKH_ALLVD (Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) GN=Alvin_1094 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-09
Identity = 50/127 (39.37%), Postives = 63/127 (49.61%), Query Frame = 1 

Query: 111 EYETPWWTAAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAG 170
           E  T    AA K +   L  LI+   G D++A D+ G TALL  A  G    V  LA  G
Sbjct: 163 EGRTALMQAASKGETGVLPLLIEG--GADLEARDKQGATALLIAADQGQAGAVETLAGLG 222

Query: 171 ANLDHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPR 230
           A LD  D  G  TAL +A G+     VE L+ +GADP  +D KG T L+ A     AT  
Sbjct: 223 AQLDAVDALGS-TALILAVGHGHVAMVERLLAMGADPNRQDRKGTTALMEA----VATDH 282

Query: 231 VQFMRRL 238
            + + RL
Sbjct: 283 AELIDRL 282

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BLAST of Lsi11G012440 vs. Swiss-Prot
Match: HECD1_MOUSE (E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-09
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = 1 

Query: 121 KKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNSG 180
           +  D  AL   ID+    +V+ +D+ G+T L + +  G+   V  L E GA+++    S 
Sbjct: 371 RSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNRGQRS- 430

Query: 181 GFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLARE 224
             ++LH AA + +P+  + L+  GA+P++ DE G+TPL  ARE
Sbjct: 431 --SSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARE 470

[Close]
BLAST of Lsi11G012440 vs. Swiss-Prot
Match: AKR2A_ARATH (Ankyrin repeat domain-containing protein 2A OS=Arabidopsis thaliana GN=AKR2A PE=1 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 5.4e-09
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 1 

Query: 120 AKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNS 179
           A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L +AGA+++  D +
Sbjct: 226 ASLGDVEGLKAAL--ASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKN 285

Query: 180 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAR-----EILKATPRVQFM 235
              T LH AAGY + E V LL+E GA   +++   +TP+ +A+     E++K   +  F+
Sbjct: 286 KN-TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLEKDAFL 342

[Close]
BLAST of Lsi11G012440 vs. TrEMBL
Match: A0A0A0K634_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 625.5 bits (1612), Expect = 3.9e-176
Identity = 315/354 (88.98%), Postives = 329/354 (92.94%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLKHFTPYAVQSDQPLTQQTQKS 60
           M+AVF+NQSLSRLKL PK PLPFP   S IPHLNLRRN  HFT YAVQSDQP+TQQTQK 
Sbjct: 1   MEAVFLNQSLSRLKLPPKTPLPFP---SPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKP 60

Query: 61  EDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAA 120
           EDD SYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAA
Sbjct: 61  EDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAA 120

Query: 121 KKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNSG 180
           KKADESALKSLIDS D RD DAVDEDGRTALLFV+GLGS  CVR+LA+AG NL+HRDNSG
Sbjct: 121 KKADESALKSLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSG 180

Query: 181 GFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPRVQFMRRLGLE 240
           GFTALHMAAGYVKPETVELLVELGADPEI+DEKGRT L LA+EILKATPRVQFMRRLGLE
Sbjct: 181 GFTALHMAAGYVKPETVELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLE 240

Query: 241 RVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADFEAG 300
           +VI AVE+VVYEYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLV D+EAG
Sbjct: 241 KVIRAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAG 300

Query: 301 LEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQAQ 355
           LEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEP  NVDPDL+NE+EKAQAQ
Sbjct: 301 LEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKAQAQ 351

[Close]
BLAST of Lsi11G012440 vs. TrEMBL
Match: V4SA78_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028628mg PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 2.3e-131
Identity = 235/358 (65.64%), Postives = 287/358 (80.17%), Query Frame = 1 

Query: 2   DAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRR---NLKHFTPYAVQSDQPLTQQTQ 61
           D++ +NQSL+RLKL PK     PP +S+  H+   +    L     +A+Q+ Q     T 
Sbjct: 3   DSLLLNQSLARLKLLPK----IPPPASQFLHIKPPQPHGKLHSTASFAIQNQQQTQYGTT 62

Query: 62  KSEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWT 121
              DD SYGEV  IIGSRAL DATGMEYLI+WKDGH+PSWVP D+IAKDVVAEYE+PWWT
Sbjct: 63  DQNDDESYGEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYESPWWT 122

Query: 122 AAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDN 181
           AAKKAD++ALK +I++ DGRDVDAVD DGRTALLFV+GLGS+ CVR+LAEAG +L+HRD+
Sbjct: 123 AAKKADDAALKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDS 182

Query: 182 SGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPR---VQFMR 241
            GG TALHMAAGYVKP   +LL+ELGAD ++ED++G TPL LA+EIL+ TP+   +QF R
Sbjct: 183 GGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQFAR 242

Query: 242 RLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVA 301
           RLGLE VI  +E  V+EYAEV+ +LEKRGKG+ LEYLVKW+DG DNEWVKVG IAEDLV 
Sbjct: 243 RLGLEAVIRNLEEAVFEYAEVQEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVT 302

Query: 302 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQA 354
           D+EAGLEYAVAE V+GKR+GDDGK E+LVKWTDI +ATWEP+ NVDPDL+ E+E +Q+
Sbjct: 303 DYEAGLEYAVAEGVLGKRMGDDGKREFLVKWTDIDEATWEPEENVDPDLIKEFEDSQS 356

[Close]
BLAST of Lsi11G012440 vs. TrEMBL
Match: A0A067FLG7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016433mg PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 2.3e-131
Identity = 235/358 (65.64%), Postives = 287/358 (80.17%), Query Frame = 1 

Query: 2   DAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRR---NLKHFTPYAVQSDQPLTQQTQ 61
           D++ +NQSL+RLKL PK     PP +S+  H+   +    L     +A+Q+ Q     T 
Sbjct: 3   DSLLLNQSLARLKLLPK----IPPPASQFLHIKPPQPHGKLHSTASFAIQNQQQTQYGTT 62

Query: 62  KSEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWT 121
              DD SYGEV  IIGSRAL DATGMEYLI+WKDGH+PSWVP D+IAKDVVAEYE+PWWT
Sbjct: 63  DQNDDESYGEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYESPWWT 122

Query: 122 AAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDN 181
           AAKKAD++ALK +I++ DGRDVDAVD DGRTALLFV+GLGS+ CVR+LAEAG +L+HRD+
Sbjct: 123 AAKKADDAALKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDS 182

Query: 182 SGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPR---VQFMR 241
            GG TALHMAAGYVKP   +LL+ELGAD ++ED++G TPL LA+EIL+ TP+   +QF R
Sbjct: 183 GGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQFAR 242

Query: 242 RLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVA 301
           RLGLE VI  +E  V+EYAEV+ +LEKRGKG+ LEYLVKW+DG DNEWVKVG IAEDLV 
Sbjct: 243 RLGLEAVIRNLEEAVFEYAEVQEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVT 302

Query: 302 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQA 354
           D+EAGLEYAVAE V+GKR+GDDGK E+LVKWTDI +ATWEP+ NVDPDL+ E+E +Q+
Sbjct: 303 DYEAGLEYAVAEGVLGKRMGDDGKREFLVKWTDIDEATWEPEENVDPDLIKEFEDSQS 356

[Close]
BLAST of Lsi11G012440 vs. TrEMBL
Match: B9HR05_POPTR (Chaos family protein OS=Populus trichocarpa GN=POPTR_0009s14260g PE=4 SV=2)

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-130
Identity = 244/364 (67.03%), Postives = 286/364 (78.57%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNL---RRNLKHFTPYAVQSDQ----PL 60
           MD++FVNQ+LSRLKLSPK  +P   S     HL     R+    FT +A+Q  Q    PL
Sbjct: 1   MDSLFVNQALSRLKLSPKLTIPSYFSYQSPLHLKQNHGRKPYNSFTLFAIQDQQETQNPL 60

Query: 61  TQQTQKSEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
            + TQ  EDD SYGEV  IIGSRA+    GMEY I+WKDGH+PSWVPSDFIAKDVVAEYE
Sbjct: 61  QETTQNIEDDESYGEVSKIIGSRAVEGGKGMEYFIEWKDGHTPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDSADG--RDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGA 180
           TPWWTAAKKAD SAL  ++   +   RDV+AVD DGRTALLFV+GLGS+PCV++LAEAGA
Sbjct: 121 TPWWTAAKKADSSALSQILSENEDERRDVNAVDSDGRTALLFVSGLGSEPCVKLLAEAGA 180

Query: 181 NLDHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPR- 240
            LDHRDNSGG TALHMAAGYVKP  V+LLV+LGADPE++D++G TPL LA+EIL+ TP+ 
Sbjct: 181 ELDHRDNSGGLTALHMAAGYVKPGVVKLLVDLGADPEVKDDRGLTPLDLAKEILRVTPKG 240

Query: 241 --VQFMRRLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGL 300
             +QF RRLGLE VI  +E  ++EYAEV+ +LEKRGKG++LEYLVKWKDG DNEWVK   
Sbjct: 241 NPMQFGRRLGLESVIRNLEEGIFEYAEVQEILEKRGKGKDLEYLVKWKDGSDNEWVKAKF 300

Query: 301 IAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEY 353
           I EDLV DFEAGLEYAVAE VVGKR+GDDGK EYLVKWTDI +ATWEP+ NVD DL+ E+
Sbjct: 301 IGEDLVMDFEAGLEYAVAEGVVGKRLGDDGKNEYLVKWTDIDEATWEPEENVDLDLIKEF 360

[Close]
BLAST of Lsi11G012440 vs. TrEMBL
Match: B9RF69_RICCO (Ankyrin repeat domain protein, putative OS=Ricinus communis GN=RCOM_1431980 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 7.3e-130
Identity = 234/366 (63.93%), Postives = 284/366 (77.60%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFP-PSSSRIPHLNLRRNLKHFTPYAVQSDQPLTQQTQK 60
           MD +FVN+ LSRLKLSP   +P   PS      L  +     FT +A+Q+ +        
Sbjct: 1   MDTLFVNRCLSRLKLSPNLTVPSSSPSFFSHQFLKTQPLKPSFTLFAIQNQETQNPLQPS 60

Query: 61  SEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTA 120
           ++DD SYGEV  IIGS+AL D TGMEYLI+WKDGH+PSWVPS++IAKDV+AEYE+PWWTA
Sbjct: 61  TQDDESYGEVSKIIGSKALEDGTGMEYLIEWKDGHTPSWVPSNYIAKDVIAEYESPWWTA 120

Query: 121 AKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNS 180
           AKKAD +AL  L+ + D RDVDAVD  GRTALLFV+GLGS+PCV++LAEAGA+L+HRDNS
Sbjct: 121 AKKADHAALSELLSADDDRDVDAVDSYGRTALLFVSGLGSEPCVKLLAEAGADLNHRDNS 180

Query: 181 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPR---VQFMRR 240
           GG TALHMAAGYV+P  V+LL+ELGADPE+ED+KG TPL LA++IL  TP+    QF RR
Sbjct: 181 GGLTALHMAAGYVQPGIVKLLIELGADPEVEDDKGLTPLALAKQILNVTPKGNPAQFARR 240

Query: 241 LGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVAD 300
           LGLE VI  +   ++EYAEV+ LLEKRGKG+ +EYLVKWKDG DNEWVK G+I EDL+ D
Sbjct: 241 LGLENVIRVINEEIFEYAEVQELLEKRGKGDKVEYLVKWKDGSDNEWVKAGVIGEDLIRD 300

Query: 301 FEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQAQPQ 360
           FEAGLEYAVAE V+GKRV +DGK EYLVKWTDI +ATWEP+ NVDPDL+ E+E  Q    
Sbjct: 301 FEAGLEYAVAEGVMGKRVREDGKNEYLVKWTDIDEATWEPEENVDPDLIKEFEDGQVNNN 360

Query: 361 AQSSNG 363
             ++NG
Sbjct: 361 NNNTNG 366

[Close]
BLAST of Lsi11G012440 vs. TAIR10
Match: AT2G47450.1 (AT2G47450.1 chloroplast signal recognition particle component (CAO))

HSP 1 Score: 412.9 bits (1060), Expect = 2.0e-115
Identity = 225/362 (62.15%), Postives = 273/362 (75.41%), Query Frame = 1 

Query: 3   AVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLKHFTPY---AVQSD-QPLTQQTQ 62
           A+ ++QSLSR+KLSP        S+     L +RR    F      AVQ + +  T   +
Sbjct: 12  ALVIHQSLSRIKLSPPKSSSSSSSAFSPESLPIRRIELCFRGAICAAVQRNYEETTSSVE 71

Query: 63  KSEDD----GSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 122
           ++E+D     SYGEV+ IIGSR   +   MEYLI+WKDGHSPSWVPS +IA DVV+EYET
Sbjct: 72  EAEEDDESSSSYGEVNKIIGSRTAGEGA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLD 182
           PWWTAA+KADE AL  L++    RDVDAVDE+GRTALLFVAGLGSD CVR+LAEAGA+LD
Sbjct: 132 PWWTAARKADEQALSQLLED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPR---V 242
           HRD  GG TALHMAAGYV+PE VE LVELGAD E+EDE+G T L LAREILK TP+   +
Sbjct: 192 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 251

Query: 243 QFMRRLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAE 302
           QF RR+GLE+VI  +E  V+EYAEV+ ++EKRGKG+++EYLV+WKDG D EWVK   +AE
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVVGKRVGDDGK-MEYLVKWTDIQDATWEPQANVDPDLVNEYEK 353
           D+  D+E GLEYAVAE+V+GKRVGDDGK +EYLVKWTD+ DATWEPQ NVD  LV  Y++
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQQ 369

[Close]
BLAST of Lsi11G012440 vs. TAIR10
Match: AT4G35450.5 (AT4G35450.5 ankyrin repeat-containing protein 2)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-10
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 1 

Query: 120 AKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNS 179
           A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L +AGA+++  D +
Sbjct: 234 ASLGDVEGLKAAL--ASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKN 293

Query: 180 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAR-----EILKATPRVQFM 235
              T LH AAGY + E V LL+E GA   +++   +TP+ +A+     E++K   +  F+
Sbjct: 294 KN-TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLEKDAFL 350

[Close]
BLAST of Lsi11G012440 vs. TAIR10
Match: AT2G17390.1 (AT2G17390.1 ankyrin repeat-containing 2B)

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-10
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 120 AKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNS 179
           A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L +AGAN +  D +
Sbjct: 228 ASLGDVEGLKAAL--ASGGNKDEEDSEGRTALHFACGYGEVRCAQVLLDAGANANAIDKN 287

Query: 180 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAR 223
              T LH AAGY + E V LL+E GA    ++   + P+ +AR
Sbjct: 288 KN-TPLHYAAGYGRKECVSLLLENGAAVTQQNMDNKNPIDVAR 327

[Close]
BLAST of Lsi11G012440 vs. TAIR10
Match: AT5G09410.3 (AT5G09410.3 ethylene induced calmodulin binding protein)

HSP 1 Score: 58.9 bits (141), Expect = 7.4e-09
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 136 DGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNSGGFTALHMAAGYVKPE 195
           +G+  + +DEDG+  L FVA LG D  ++ +  AG N++ RD + G++ALH AA   + E
Sbjct: 661 EGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRD-ANGWSALHWAAFSGREE 720

Query: 196 TVELLVELGA------DPEIEDEKGRTPLVLA 222
           TV +LV LGA      DP  E   G+T   LA
Sbjct: 721 TVAVLVSLGADAGALTDPSPELPLGKTAADLA 751

[Close]
BLAST of Lsi11G012440 vs. TAIR10
Match: AT3G04710.1 (AT3G04710.1 ankyrin repeat family protein)

HSP 1 Score: 58.5 bits (140), Expect = 9.7e-09
Identity = 51/179 (28.49%), Postives = 84/179 (46.93%), Query Frame = 1 

Query: 43  TPYAVQSDQPLTQQTQKSEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSD 102
           TP    + Q   +  +   + G+   +   +G+ AL  A G   +   K+      + S 
Sbjct: 91  TPLVHAARQGQIETVKYLLEQGADPNIASELGATALHHAAGTGEIELLKE------LLSR 150

Query: 103 FIAKDVVAEYETPWWTAAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPC 162
            +  D  +E  TP   AA    ++A++ L++     + +A  ED  T LL     GS  C
Sbjct: 151 GVPVDSESESGTPLIWAAGHDQKNAVEVLLEH--NANPNAETEDNITPLLSAVAAGSLSC 210

Query: 163 VRMLAEAGANLDHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLA 222
           + +L +AGA  +    +GG T LH+AA     E +  L++ GADP  +DE+G  PL +A
Sbjct: 211 LELLVKAGAKANVF--AGGATPLHIAADIGNLELINCLLKAGADPNQKDEEGNRPLEVA 259

[Close]
BLAST of Lsi11G012440 vs. NCBI nr
Match: gi|659094128|ref|XP_008447900.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 632.1 bits (1629), Expect = 6.0e-178
Identity = 322/366 (87.98%), Postives = 337/366 (92.08%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFP-PSSSRIPHLNLRRNLKHFTPYAVQSDQPLTQQTQK 60
           M+AVF+NQSLSRLKL PKPPLP P P  S IPHLNLRRN  HFT YAVQSDQP+TQQT K
Sbjct: 1   MEAVFLNQSLSRLKLPPKPPLPLPIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTYK 60

Query: 61  SEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTA 120
            EDD SYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTA
Sbjct: 61  PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTA 120

Query: 121 AKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNS 180
           AKKAD+SAL+SLIDS D RD DAVDEDGRTALLFV+GLGS  CVR+LAEAG NL+HRDNS
Sbjct: 121 AKKADKSALESLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILAEAGVNLNHRDNS 180

Query: 181 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPRVQFMRRLGL 240
           GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRT L LA+EILKATPRVQFMRRLGL
Sbjct: 181 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTALELAKEILKATPRVQFMRRLGL 240

Query: 241 ERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADFEA 300
           E+VIGAVE+VVYEYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVAD+EA
Sbjct: 241 EKVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADYEA 300

Query: 301 GLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQAQPQAQS 360
           GLEYAVAEAVVGKRVGD+GKMEYLVKWTDIQDATWEP  NVDPDL+NE+EKA    QAQS
Sbjct: 301 GLEYAVAEAVVGKRVGDEGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKA----QAQS 360

Query: 361 SNGSAL 366
           SN SAL
Sbjct: 361 SNDSAL 362

[Close]
BLAST of Lsi11G012440 vs. NCBI nr
Match: gi|659094126|ref|XP_008447899.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 629.8 bits (1623), Expect = 3.0e-177
Identity = 317/357 (88.80%), Postives = 332/357 (93.00%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFP-PSSSRIPHLNLRRNLKHFTPYAVQSDQPLTQQTQK 60
           M+AVF+NQSLSRLKL PKPPLP P P  S IPHLNLRRN  HFT YAVQSDQP+TQQT K
Sbjct: 1   MEAVFLNQSLSRLKLPPKPPLPLPIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTYK 60

Query: 61  SEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTA 120
            EDD SYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTA
Sbjct: 61  PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTA 120

Query: 121 AKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNS 180
           AKKAD+SAL+SLIDS D RD DAVDEDGRTALLFV+GLGS  CVR+LAEAG NL+HRDNS
Sbjct: 121 AKKADKSALESLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILAEAGVNLNHRDNS 180

Query: 181 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPRVQFMRRLGL 240
           GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRT L LA+EILKATPRVQFMRRLGL
Sbjct: 181 GGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTALELAKEILKATPRVQFMRRLGL 240

Query: 241 ERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADFEA 300
           E+VIGAVE+VVYEYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVAD+EA
Sbjct: 241 EKVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADYEA 300

Query: 301 GLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQAQPQ 357
           GLEYAVAEAVVGKRVGD+GKMEYLVKWTDIQDATWEP  NVDPDL+NE+EKAQAQ Q
Sbjct: 301 GLEYAVAEAVVGKRVGDEGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKAQAQAQ 357

[Close]
BLAST of Lsi11G012440 vs. NCBI nr
Match: gi|449472373|ref|XP_004153574.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 625.5 bits (1612), Expect = 5.6e-176
Identity = 315/354 (88.98%), Postives = 329/354 (92.94%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLKHFTPYAVQSDQPLTQQTQKS 60
           M+AVF+NQSLSRLKL PK PLPFP   S IPHLNLRRN  HFT YAVQSDQP+TQQTQK 
Sbjct: 1   MEAVFLNQSLSRLKLPPKTPLPFP---SPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKP 60

Query: 61  EDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAA 120
           EDD SYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAA
Sbjct: 61  EDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAA 120

Query: 121 KKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEAGANLDHRDNSG 180
           KKADESALKSLIDS D RD DAVDEDGRTALLFV+GLGS  CVR+LA+AG NL+HRDNSG
Sbjct: 121 KKADESALKSLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSG 180

Query: 181 GFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATPRVQFMRRLGLE 240
           GFTALHMAAGYVKPETVELLVELGADPEI+DEKGRT L LA+EILKATPRVQFMRRLGLE
Sbjct: 181 GFTALHMAAGYVKPETVELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLE 240

Query: 241 RVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADFEAG 300
           +VI AVE+VVYEYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLV D+EAG
Sbjct: 241 KVIRAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAG 300

Query: 301 LEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVNEYEKAQAQ 355
           LEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEP  NVDPDL+NE+EKAQAQ
Sbjct: 301 LEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKAQAQ 351

[Close]
BLAST of Lsi11G012440 vs. NCBI nr
Match: gi|1009150816|ref|XP_015893225.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 480.3 bits (1235), Expect = 2.9e-132
Identity = 249/366 (68.03%), Postives = 287/366 (78.42%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLK-HFTPYAV--------QSDQ 60
           M+A+FVNQSLSRLKLSP     F  SS       L+   K H TP  +        QS  
Sbjct: 1   MEALFVNQSLSRLKLSPN----FTTSSFPSQSYRLKPTQKAHPTPTPICVIQNPEKQSQA 60

Query: 61  PLTQQTQK--SEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVV 120
           P     QK  +EDD  YGEVD IIGSRA    TGMEYLI+WKDGH+PSWV SD+IAKDVV
Sbjct: 61  PTLSGNQKRGNEDDEYYGEVDKIIGSRAAEGKTGMEYLIEWKDGHTPSWVSSDYIAKDVV 120

Query: 121 AEYETPWWTAAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEA 180
           AEYETPWWTAAKKAD +ALK LI++ DGRD+DAVD DGRTALLFV+GLGS+ CVR+LAE+
Sbjct: 121 AEYETPWWTAAKKADHNALKRLIEADDGRDIDAVDSDGRTALLFVSGLGSEECVRVLAES 180

Query: 181 GANLDHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATP 240
           GA+LDHRDNSGG TALHMAAGYVKP   +LL+ELGADPE++D++GRTPL LA+EILK TP
Sbjct: 181 GADLDHRDNSGGLTALHMAAGYVKPGVAKLLMELGADPEVQDDRGRTPLDLAKEILKVTP 240

Query: 241 R---VQFMRRLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKV 300
           +   +QF RRLGLE VI A+E VV+EYAEV+ LLEKRGKG+NLEYLVKWKDG+DN WVK 
Sbjct: 241 KGNPMQFARRLGLESVIRALEEVVFEYAEVQELLEKRGKGDNLEYLVKWKDGDDNTWVKA 300

Query: 301 GLIAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVN 353
             I EDL+ D+EAGLEYAVAE V+GKR+GDDGK EYLVKWTDI DATWEP+ NVDPDL+ 
Sbjct: 301 RFIGEDLIKDYEAGLEYAVAEGVLGKRLGDDGKNEYLVKWTDIDDATWEPEENVDPDLIK 360

[Close]
BLAST of Lsi11G012440 vs. NCBI nr
Match: gi|1009150731|ref|XP_015893177.1| (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 479.6 bits (1233), Expect = 5.0e-132
Identity = 249/366 (68.03%), Postives = 287/366 (78.42%), Query Frame = 1 

Query: 1   MDAVFVNQSLSRLKLSPKPPLPFPPSSSRIPHLNLRRNLK-HFTPYAV--------QSDQ 60
           M+A+FVNQSLSRLKLSP     F  SS       L+   K H TP  +        QS  
Sbjct: 1   MEALFVNQSLSRLKLSPN----FTTSSFPSQSYRLKPTQKAHPTPTPICVIQNPEKQSQA 60

Query: 61  PLTQQTQK--SEDDGSYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVV 120
           P     QK  +EDD  YGEVD IIGSRA    TGMEYLI+WKDGH+PSWV SD+IAKDVV
Sbjct: 61  PTLSGNQKRGNEDDEYYGEVDKIIGSRAAEGKTGMEYLIEWKDGHTPSWVSSDYIAKDVV 120

Query: 121 AEYETPWWTAAKKADESALKSLIDSADGRDVDAVDEDGRTALLFVAGLGSDPCVRMLAEA 180
           AEYETPWWTAAKKAD +ALK LI++ DGRD+DAVD DGRTALLFV+GLGS+ CVR+LAEA
Sbjct: 121 AEYETPWWTAAKKADHNALKRLIEADDGRDIDAVDSDGRTALLFVSGLGSEECVRVLAEA 180

Query: 181 GANLDHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAREILKATP 240
           GA+LDHR+NSGG TALHMAAGYVKP   +LL+ELGADPE++D++GRTPL LA+EILK TP
Sbjct: 181 GADLDHRNNSGGLTALHMAAGYVKPGVAKLLMELGADPEVQDDRGRTPLDLAKEILKVTP 240

Query: 241 R---VQFMRRLGLERVIGAVERVVYEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKV 300
           +   +QF RRLGLE VI A+E VV+EYAEV+ LLEKRGKG+NLEYLVKWKDG+DN WVK 
Sbjct: 241 KGNPMQFARRLGLESVIRALEEVVFEYAEVQELLEKRGKGDNLEYLVKWKDGDDNTWVKA 300

Query: 301 GLIAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPQANVDPDLVN 353
             I EDL+ D+EAGLEYAVAE V+GKR+GDDGK EYLVKWTDI DATWEP+ NVDPDL+ 
Sbjct: 301 RFIGEDLIKDYEAGLEYAVAEGVLGKRLGDDGKNEYLVKWTDIDDATWEPEENVDPDLIK 360

The following BLAST results are available for this feature:
BLAST of Lsi11G012440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SR43C_ARATH3.6e-11462.15Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian... [more]
SR43C_ORYSJ8.6e-9250.13Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati... [more]
ANKH_ALLVD2.4e-0939.37Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 10... [more]
HECD1_MOUSE4.1e-0933.98E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2[more]
AKR2A_ARATH5.4e-0935.00Ankyrin repeat domain-containing protein 2A OS=Arabidopsis thaliana GN=AKR2A PE=... [more]
BLAST of Lsi11G012440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K634_CUCSA3.9e-17688.98Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018780 PE=4 SV=1[more]
V4SA78_9ROSI2.3e-13165.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028628mg PE=4 SV=1[more]
A0A067FLG7_CITSI2.3e-13165.64Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016433mg PE=4 SV=1[more]
B9HR05_POPTR1.1e-13067.03Chaos family protein OS=Populus trichocarpa GN=POPTR_0009s14260g PE=4 SV=2[more]
B9RF69_RICCO7.3e-13063.93Ankyrin repeat domain protein, putative OS=Ricinus communis GN=RCOM_1431980 PE=4... [more]
BLAST of Lsi11G012440 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47450.12.0e-11562.15 chloroplast signal recognition particle component (CAO)[more]
AT4G35450.53.0e-1035.00 ankyrin repeat-containing protein 2[more]
AT2G17390.15.1e-1038.83 ankyrin repeat-containing 2B[more]
AT5G09410.37.4e-0941.30 ethylene induced calmodulin binding protein[more]
AT3G04710.19.7e-0928.49 ankyrin repeat family protein[more]
BLAST of Lsi11G012440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094128|ref|XP_008447900.1|6.0e-17887.98PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X2 ... [more]
gi|659094126|ref|XP_008447899.1|3.0e-17788.80PREDICTED: signal recognition particle 43 kDa protein, chloroplastic isoform X1 ... [more]
gi|449472373|ref|XP_004153574.1|5.6e-17688.98PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sa... [more]
gi|1009150816|ref|XP_015893225.1|2.9e-13268.03PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Zizip... [more]
gi|1009150731|ref|XP_015893177.1|5.0e-13268.03PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like isofor... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0080085signal recognition particle, chloroplast targeting
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0045038protein import into chloroplast thylakoid membrane
GO:0009416response to light stimulus
Vocabulary: INTERPRO
TermDefinition
IPR023780Chromo_domain
IPR020683Ankyrin_rpt-contain_dom
IPR016197Chromo-like_dom_sf
IPR002110Ankyrin_rpt
IPR000953Chromo/chromo_shadow_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0070208 protein heterotrimerization
biological_process GO:0009639 response to red or far red light
biological_process GO:0044238 primary metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0009416 response to light stimulus
biological_process GO:0009744 response to sucrose
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0010155 regulation of proton transport
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0019344 cysteine biosynthetic process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0044434 chloroplast part
cellular_component GO:0080085 signal recognition particle, chloroplast targeting
cellular_component GO:0009507 chloroplast
molecular_function GO:0042802 identical protein binding
molecular_function GO:0005515 protein binding
molecular_function GO:0030674 protein binding, bridging
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G012440.1Lsi11G012440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 303..353
score: 7.9E-7coord: 65..117
score: 2.4E-4coord: 252..302
score: 1.
IPR000953Chromo/chromo shadow domainPROFILEPS50013CHROMO_2coord: 254..283
score: 8.557coord: 304..360
score: 11
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 146..175
score: 7.6coord: 111..142
score: 420.0coord: 180..209
score: 4.
IPR002110Ankyrin repeatPROFILEPS50088ANK_REPEATcoord: 180..212
score: 11.995coord: 146..178
score: 10
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 252..299
score: 6.79E-10coord: 302..350
score: 5.15E-11coord: 62..116
score: 3.0
IPR020683Ankyrin repeat-containing domainGENE3DG3DSA:1.25.40.20coord: 113..223
score: 3.2
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 119..211
score: 2.9
IPR020683Ankyrin repeat-containing domainPROFILEPS50297ANK_REP_REGIONcoord: 137..221
score: 25
IPR020683Ankyrin repeat-containing domainunknownSSF48403Ankyrin repeatcoord: 111..223
score: 2.49
IPR023780Chromo domainPFAMPF00385Chromocoord: 306..350
score: 1.
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 57..112
score: 1.4E-4coord: 255..299
score: 5.3E-7coord: 302..356
score: 2.5
NoneNo IPR availablePANTHERPTHR24128FAMILY NOT NAMEDcoord: 1..354
score: 8.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G012440Csa7G018780Cucumber (Chinese Long) v2culsiB494
Lsi11G012440CSPI07G01370Wild cucumber (PI 183967)cpilsiB506
Lsi11G012440Cucsa.099260Cucumber (Gy14) v1cgylsiB122
Lsi11G012440CmaCh19G007690Cucurbita maxima (Rimu)cmalsiB472
Lsi11G012440CmoCh11G017640Cucurbita moschata (Rifu)cmolsiB080
Lsi11G012440Cla015785Watermelon (97103) v1lsiwmB106
Lsi11G012440MELO3C013306Melon (DHL92) v3.5.1lsimeB096
Lsi11G012440ClCG02G003690Watermelon (Charleston Gray)lsiwcgB097
Lsi11G012440MELO3C013306.2Melon (DHL92) v3.6.1lsimedB102
Lsi11G012440Bhi05G001408Wax gourdlsiwgoB118
Lsi11G012440Cp4.1LG04g04680Cucurbita pepo (Zucchini)cpelsiB526
Lsi11G012440Cp4.1LG15g06160Cucurbita pepo (Zucchini)cpelsiB199
Lsi11G012440CsGy7G001220Cucumber (Gy14) v2cgyblsiB462
Lsi11G012440Carg26367Silver-seed gourdcarlsiB956
Lsi11G012440Carg25748Silver-seed gourdcarlsiB971
Lsi11G012440CsaV3_7G001450Cucumber (Chinese Long) v3cuclsiB529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G012440Bottle gourd (USVL1VR-Ls)lsilsiB054
Lsi11G012440Cucurbita maxima (Rimu)cmalsiB100
Lsi11G012440Cucurbita maxima (Rimu)cmalsiB558
Lsi11G012440Cucurbita moschata (Rifu)cmolsiB457
Lsi11G012440Cucurbita moschata (Rifu)cmolsiB542
Lsi11G012440Cucurbita pepo (Zucchini)cpelsiB232
Lsi11G012440Cucurbita pepo (Zucchini)cpelsiB607
Lsi11G012440Watermelon (Charleston Gray)lsiwcgB102
Lsi11G012440Silver-seed gourdcarlsiB316
Lsi11G012440Silver-seed gourdcarlsiB740
Lsi11G012440Watermelon (97103) v2lsiwmbB086