Carg25748 (gene) Silver-seed gourd

Overview
NameCarg25748
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsignal recognition particle 43 kDa protein, chloroplastic
LocationCucurbita_argyrosperma_scaffold_266 : 82069 .. 82992 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACCAGTCTCTCTGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCGAGGTCGATGCCATCATCGGAAGTCGAGCTCGGTCCGACGCCACCGGGATGGAGTATCTAATCAAATGGAAAAACGGGCATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGACAGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCAACGGCCGTGATTTCGATTCCGTAGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGACTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGACTGGGTATGTGAAACCAGGGACGGTGGAATTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTGGCAAAAGGGATACTGAAAGCGACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAGATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAGTTGGTGGCGGATTTTGAAGCTGAGTTGGAATACGCGGTGGCGGAGGCGGTGGTTGAGAAGAGGCTTAGGGAATGGGGACGATGA

mRNA sequence

ATGGATGACCAGTCTCTCTGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCGAGGTCGATGCCATCATCGGAAGTCGAGCTCGGTCCGACGCCACCGGGATGGAGTATCTAATCAAATGGAAAAACGGGCATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGACAGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCAACGGCCGTGATTTCGATTCCGTAGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGACTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGACTGGGTATGTGAAACCAGGGACGGTGGAATTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTGGCAAAAGGGATACTGAAAGCGACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAGATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAGTTGGTGGCGGATTTTGAAGCTGAGTTGGAATACGCGGTGGCGGAGGCGGTGGTTGAGAAGAGGCTTAGGGAATGGGGACGATGA

Coding sequence (CDS)

ATGGATGACCAGTCTCTCTGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCGAGGTCGATGCCATCATCGGAAGTCGAGCTCGGTCCGACGCCACCGGGATGGAGTATCTAATCAAATGGAAAAACGGGCATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGACAGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCAACGGCCGTGATTTCGATTCCGTAGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGACTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGACTGGGTATGTGAAACCAGGGACGGTGGAATTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTGGCAAAAGGGATACTGAAAGCGACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAGATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAGTTGGTGGCGGATTTTGAAGCTGAGTTGGAATACGCGGTGGCGGAGGCGGTGGTTGAGAAGAGGCTTAGGGAATGGGGACGATGA

Protein sequence

MDDQSLCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAIIGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLIDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEKRLREWGR
Homology
[Close]
BLAST of Carg25748 vs. NCBI nr
Match: XP_022969184.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 607.8 bits (1566), Expect = 2.0e-170
Identity = 293/307 (95.44%), Postives = 302/307 (98.37%), Query Frame = 0 

Query: 1   MDDQSLCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAI 60
           MDDQSLCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAI
Sbjct: 1   MDDQSLCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAI 60

Query: 61  IGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLI 120
           IGSRARSDA GMEYLIKWK+G+SPTWVASNFIAKHIVADYEAPWWTAAKKA+ESALKSLI
Sbjct: 61  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWTAAKKANESALKSLI 120

Query: 121 DAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYV 180
           DAA+GRDFDSVDGDGRTALLFVAGLGSEPCVRMLAE GVNLDHRDYCGGFTALHMA GYV
Sbjct: 121 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEAGVNLDHRDYCGGFTALHMAAGYV 180

Query: 181 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE 240
           KPGTVELLVDLGADPE+ED++GRTPLGLAKGILKATP+VHFVRRVGLERVIGAVEKVCFE
Sbjct: 181 KPGTVELLVDLGADPEVEDNKGRTPLGLAKGILKATPKVHFVRRVGLERVIGAVEKVCFE 240

Query: 241 YAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEK 300
           YAEVERLLGRRG GEDLEYLVKWKDGEDNEWVNVGLI+AELVADFEA LEYAVAEAVVEK
Sbjct: 241 YAEVERLLGRRGMGEDLEYLVKWKDGEDNEWVNVGLISAELVADFEAALEYAVAEAVVEK 300

Query: 301 RLREWGR 308
           RLREWGR
Sbjct: 301 RLREWGR 307

[Close]
BLAST of Carg25748 vs. NCBI nr
Match: XP_004153574.1 (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus] >KGN43296.1 hypothetical protein Csa_7G018780 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 4.8e-124
Identity = 226/302 (74.83%), Postives = 260/302 (86.09%), Query Frame = 0 

Query: 6   LCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAIIGSRA 65
           L PK PLP PS IPHLNLRRNF  FT YA+Q+++   Q+T KPED+ES+GEVD IIGSRA
Sbjct: 15  LPPKTPLPFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKPEDDESYGEVDGIIGSRA 74

Query: 66  RSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLIDAANG 125
             DATGMEYLIKWK+GHSP+WV S+FIAK +VA+YE PWWTAAKKADESALKSLID+ + 
Sbjct: 75  LPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDSGDE 134

Query: 126 RDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYVKPGTV 185
           RDFD+VD DGRTALLFV+GLGS  CVR+LA+ GVNL+HRD  GGFTALHMA GYVKP TV
Sbjct: 135 RDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSGGFTALHMAAGYVKPETV 194

Query: 186 ELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVE 245
           ELLV+LGADPEI+D++GRT L LAK ILKATPRV F+RR+GLE+VI AVEKV +EYAEVE
Sbjct: 195 ELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLEKVIRAVEKVVYEYAEVE 254

Query: 246 RLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEKRLREW 305
            LL +RGKGE+LEYLVKWKDGEDNEWV VGLIA +LV D+EA LEYAVAEAVV KR+ + 
Sbjct: 255 ELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAGLEYAVAEAVVGKRVGDD 314

Query: 306 GR 308
           G+
Sbjct: 315 GK 316

[Close]
BLAST of Carg25748 vs. NCBI nr
Match: XP_008447899.1 (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 444.9 bits (1143), Expect = 2.2e-121
Identity = 220/290 (75.86%), Postives = 255/290 (87.93%), Query Frame = 0 

Query: 18  IPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAIIGSRARSDATGMEYLIK 77
           IPHLNLRRNF  FT YA+Q+++   Q+T+KPED+ES+GEVD IIGSRA  DATGMEYLIK
Sbjct: 31  IPHLNLRRNFTHFTAYAVQSDQPITQQTYKPEDDESYGEVDGIIGSRALPDATGMEYLIK 90

Query: 78  WKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLIDAANGRDFDSVDGDGRT 137
           WK+GHSP+WV S+FIAK +VA+YE PWWTAAKKAD+SAL+SLID+ + RDFD+VD DGRT
Sbjct: 91  WKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADKSALESLIDSGDERDFDAVDEDGRT 150

Query: 138 ALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYVKPGTVELLVDLGADPEI 197
           ALLFV+GLGS  CVR+LAE GVNL+HRD  GGFTALHMA GYVKP TVELLV+LGADPEI
Sbjct: 151 ALLFVSGLGSVECVRILAEAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVELGADPEI 210

Query: 198 EDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVERLLGRRGKGEDL 257
           ED++GRT L LAK ILKATPRV F+RR+GLE+VIGAVEKV +EYAEVE LL +RGKGE+L
Sbjct: 211 EDEKGRTALELAKEILKATPRVQFMRRLGLEKVIGAVEKVVYEYAEVEELLEKRGKGENL 270

Query: 258 EYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEKRLREWGR 308
           EYLVKWKDGEDNEWV VGLIA +LVAD+EA LEYAVAEAVV KR+ + G+
Sbjct: 271 EYLVKWKDGEDNEWVKVGLIAEDLVADYEAGLEYAVAEAVVGKRVGDEGK 320

[Close]
BLAST of Carg25748 vs. NCBI nr
Match: XP_023529738.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.1 bits (1128), Expect = 1.2e-119
Identity = 226/309 (73.14%), Postives = 260/309 (84.14%), Query Frame = 0 

Query: 6   LCPKQPLPS-PSRIPHL--NLRRNFKCFTHYALQTNKHHAQRTHK----PEDNESHGEVD 65
           L PK PLP  PS I HL  +LRR FK FT YA+  N+   Q+T +    PED+ES+GEVD
Sbjct: 15  LPPKPPLPKLPSPILHLXXHLRRTFKSFTAYAV--NEPLTQQTQQPDDFPEDDESYGEVD 74

Query: 66  AIIGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKS 125
            IIGSRA +DATGMEYLIKWK+GHSP+WV S+FIAK +VA+YE PWWTAAKKADESALKS
Sbjct: 75  GIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKS 134

Query: 126 LIDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATG 185
           LIDAA+ RDF++VD D RTALLFVAGLGSEPCVR+LAE G NLDHRD  GGFTALHMA G
Sbjct: 135 LIDAADSRDFNAVDEDSRTALLFVAGLGSEPCVRILAEAGANLDHRDKSGGFTALHMAAG 194

Query: 186 YVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVC 245
           YVKPGTVELL++LGADPE++DD+GRTPL LA+ I+KATPRV F RR+GLERVIGA+E+V 
Sbjct: 195 YVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFARRLGLERVIGALERVV 254

Query: 246 FEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVV 305
           FE+AEVE LL +RGKGE+LEYLVKWKDGEDNEWV   LIA +LVADFEA LEYAVAEAVV
Sbjct: 255 FEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVADFEAGLEYAVAEAVV 314

Query: 306 EKRLREWGR 308
            KR+ + G+
Sbjct: 315 GKRVGDDGK 321

[Close]
BLAST of Carg25748 vs. NCBI nr
Match: XP_022135674.1 (signal recognition particle 43 kDa protein, chloroplastic [Momordica charantia])

HSP 1 Score: 408.7 bits (1049), Expect = 1.8e-110
Identity = 211/311 (67.85%), Postives = 251/311 (80.71%), Query Frame = 0 

Query: 6   LCPK-QPLPS--PSRIPHLNLRRNFKCFTHYALQTNKHHAQRTH------KPEDNESHGE 65
           + PK  PLP   PSRIP+ NL+     F+  A+Q ++  AQ+++      K  ++E++GE
Sbjct: 15  ISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNAAISAGKFNEDETYGE 74

Query: 66  VDAIIGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESAL 125
           VD IIGSRA  D +GMEYLI WK+GH+P+WV S+FIA+ +VA+YE PWWTAAKKADESAL
Sbjct: 75  VDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTAAKKADESAL 134

Query: 126 KSLIDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMA 185
           KSLIDAA+GRD D+VD DGRTALLFVAGLGSE CVRMLAE G N+DHRD  GGFTALHMA
Sbjct: 135 KSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMA 194

Query: 186 TGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEK 245
            GYVKPG VE L+DLGA PE+ED++GRT L LA+ ILKATPR+ F RR+GLERV+GA+EK
Sbjct: 195 AGYVKPGAVEQLLDLGAYPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEK 254

Query: 246 VCFEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEA 305
             FEYAEVE LL +RGKGE+LEYLVKWKDGEDNEWV  GLIAA+LVADFEA LEYAVAEA
Sbjct: 255 AVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEAGLEYAVAEA 314

Query: 306 VVEKRLREWGR 308
           V  KR+ + G+
Sbjct: 315 VAGKRMGDDGK 320

[Close]
BLAST of Carg25748 vs. TAIR10
Match: AT2G47450.1 (chloroplast signal recognition particle component (CAO))

HSP 1 Score: 238.0 bits (606), Expect = 7.5e-63
Identity = 125/257 (48.64%), Postives = 166/257 (64.59%), Query Frame = 0 

Query: 54  HGEVDAIIGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADE 113
           +GEV+ IIGSR   +   MEYLI+WK+GHSP+WV S++IA  +V++YE PWWTAA+KADE
Sbjct: 83  YGEVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADE 142

Query: 114 SALKSLIDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTAL 173
            AL  L++    RD D+VD +GRTALLFVAGLGS+ CVR+LAE G +LDHRD        
Sbjct: 143 QALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRXXXXXX 202

Query: 174 HMATGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERV 233
                                         T L LA+ ILK TP+   + F RR+GLE+V
Sbjct: 203 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALELAREILKTTPKGNPMQFGRRIGLEKV 262

Query: 234 IGAVEKVCFEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELE 293
           I  +E   FEYAEV+ ++ +RGKG+D+EYLV+WKDG D EWV    +A ++  D+E  LE
Sbjct: 263 INVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLE 322

Query: 294 YAVAEAVVEKRLREWGR 308
           YAVAE+V+ KR+ + G+
Sbjct: 323 YAVAESVIGKRVGDDGK 335

[Close]
BLAST of Carg25748 vs. TAIR10
Match: AT3G57130.1 (Ankyrin repeat family protein / BTB/POZ domain-containing protein)

HSP 1 Score: 44.7 bits (104), Expect = 1.2e-04
Identity = 26/78 (33.33%), Postives = 41/78 (52.56%), Query Frame = 0 

Query: 134 DGRTALLFVAGLGSEPCVRMLAEVG-VNLDHRDYCGGFTALHMATGYVKPGTVELLVDLG 193
           D   AL++     S   V+ L E+G  ++++     G TALH+A   V P  V +L+D  
Sbjct: 276 DESLALIYAVENCSREVVKALLELGAADVNYPAGPTGKTALHIAAEMVSPDMVAVLLDHH 335

Query: 194 ADPEIEDDQGRTPLGLAK 211
           ADP ++   G TPL + +
Sbjct: 336 ADPNVQTVDGITPLDILR 353

[Close]
BLAST of Carg25748 vs. TAIR10
Match: AT3G23280.1 (XB3 ortholog 5 in Arabidopsis thaliana)

HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 0 

Query: 124 NGRDFDSVDGDGRTALLFVAGLGSE--PCVRMLAEVGVNLD-HRDYCGGFTALHMATGYV 183
           +G D + +D +G+T L+ +A + SE     + L E+G N++ +R      T LH A    
Sbjct: 29  DGGDLEWMDREGKTPLI-LACMNSELFDVAKTLIELGSNVNAYRPGRHAGTPLHHAAKRG 88

Query: 184 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEK 237
              TV+LL+  GA+P + +D  +TPL +A             R  G   V+ A+EK
Sbjct: 89  LENTVKLLLSHGANPLVLNDDCQTPLEVA-------------RVKGFSNVVRAIEK 130

[Close]
BLAST of Carg25748 vs. TAIR10
Match: AT5G13530.1 (protein kinases;ubiquitin-protein ligases)

HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04
Identity = 31/93 (33.33%), Postives = 44/93 (47.31%), Query Frame = 0 

Query: 123 ANGRDFDSVDGD-GRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYVK 182
           A G D  + D   GRTAL   A   +   VR++ + GVN + R+       LHMA     
Sbjct: 713 AAGADPTAQDAQHGRTALHTAAMANNVELVRVILDAGVNANIRN-VHNTIPLHMALARGA 772

Query: 183 PGTVELLVDLGADPEIEDDQGRTPLGLAKGILK 215
              V LL++ G+D  I+DD+G     +A    K
Sbjct: 773 NSCVSLLLESGSDCNIQDDEGDNAFHIAADAAK 804

[Close]
BLAST of Carg25748 vs. Swiss-Prot
Match: sp|O22265|SR43C_ARATH (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAO PE=1 SV=2)

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-61
Identity = 125/257 (48.64%), Postives = 166/257 (64.59%), Query Frame = 0 

Query: 54  HGEVDAIIGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADE 113
           +GEV+ IIGSR   +   MEYLI+WK+GHSP+WV S++IA  +V++YE PWWTAA+KADE
Sbjct: 83  YGEVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADE 142

Query: 114 SALKSLIDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTAL 173
            AL  L++    RD D+VD +GRTALLFVAGLGS+ CVR+LAE G +LDHRD        
Sbjct: 143 QALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRXXXXXX 202

Query: 174 HMATGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERV 233
                                         T L LA+ ILK TP+   + F RR+GLE+V
Sbjct: 203 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALELAREILKTTPKGNPMQFGRRIGLEKV 262

Query: 234 IGAVEKVCFEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELE 293
           I  +E   FEYAEV+ ++ +RGKG+D+EYLV+WKDG D EWV    +A ++  D+E  LE
Sbjct: 263 INVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLE 322

Query: 294 YAVAEAVVEKRLREWGR 308
           YAVAE+V+ KR+ + G+
Sbjct: 323 YAVAESVIGKRVGDDGK 335

[Close]
BLAST of Carg25748 vs. Swiss-Prot
Match: sp|Q8LSQ2|SR43C_ORYSJ (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-50
Identity = 121/318 (38.05%), Postives = 168/318 (52.83%), Query Frame = 0 

Query: 9   KQPLPSPSRIPHLNL---------RRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDA 68
           K P P+  R P L++          R       +  QTN  +   +   +D+E++GEVD 
Sbjct: 14  KPPNPNAQRTPALSITVPFRLRLPNRRLTAAAVFQDQTNPRN-PASKGGDDDEAYGEVDR 73

Query: 69  IIGSR-----------ARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAA 128
           I+ SR           + +  T  EYL++WK+GH P+W+ +  IA  +VA+YE PWWTAA
Sbjct: 74  IVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAEAIAADVVAEYETPWWTAA 133

Query: 129 KKADESALKSLI-DAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYC 188
           KKAD + + +L+ D    RD D+ D  GRTA+ F AGLGSE CVR LAE G ++   +  
Sbjct: 134 KKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECVRALAEAGADVGRPERA 193

Query: 189 G-GFTALHMATGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVR 248
           G                                   RTPL L + +L  TP+     F R
Sbjct: 194 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLELVQDVLAKTPKGNPATFER 253

Query: 249 RVGLERVIGAVEKVCFEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVA 302
           R+ LE     +EK  +E+ EVE+++  RG+G+  EYLV+W+DG D EWV    +A +LV 
Sbjct: 254 RLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRDGGDREWVRAAWVAEDLVK 313

[Close]
BLAST of Carg25748 vs. Swiss-Prot
Match: sp|Q9VL06|UFD4_DROME (E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-06
Identity = 29/102 (28.43%), Postives = 54/102 (52.94%), Query Frame = 0 

Query: 109 KKADESALKSLIDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCG 168
           +  D  AL+  I+ + G D + +D  G+T L + +  G+   V  L E G +++      
Sbjct: 398 RSKDSEALREAIE-SGGIDVNCMDDVGQTLLNWASAFGTLEMVEYLCEKGADVNKGQRS- 457

Query: 169 GFTALHMATGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAK 211
             ++LH A  + +P   ++L+  GA P++ D+ G+TPL  A+
Sbjct: 458 --SSLHYAACFGRPAIAKILLKFGAYPDLRDEDGKTPLDKAR 495

[Close]
BLAST of Carg25748 vs. Swiss-Prot
Match: sp|Q69ZR2|HECD1_MOUSE (E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-06
Identity = 28/102 (27.45%), Postives = 52/102 (50.98%), Query Frame = 0 

Query: 109 KKADESALKSLIDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCG 168
           +  D  AL   ID     + + +D  G+T L + +  G++  V  L E G +++      
Sbjct: 371 RSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNRGQRS- 430

Query: 169 GFTALHMATGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAK 211
             ++LH A  + +P   + L+  GA+P++ D+ G+TPL  A+
Sbjct: 431 --SSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKAR 469

[Close]
BLAST of Carg25748 vs. Swiss-Prot
Match: sp|Q9ULT8|HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 8.9e-05
Identity = 28/95 (29.47%), Postives = 52/95 (54.74%), Query Frame = 0 

Query: 118 SLIDAANGRDFD--SVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHM 177
           +LIDA +   F+   +D  G+T L + +  G++  V  L E G +++        ++LH 
Sbjct: 377 ALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNRGQRS---SSLHY 436

Query: 178 ATGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAK 211
           A  + +P   + L+  GA+P++ D+ G+TPL  A+
Sbjct: 437 AACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKAR 468

[Close]
BLAST of Carg25748 vs. TrEMBL
Match: tr|A0A0A0K634|A0A0A0K634_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 3.2e-124
Identity = 226/302 (74.83%), Postives = 260/302 (86.09%), Query Frame = 0 

Query: 6   LCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAIIGSRA 65
           L PK PLP PS IPHLNLRRNF  FT YA+Q+++   Q+T KPED+ES+GEVD IIGSRA
Sbjct: 15  LPPKTPLPFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKPEDDESYGEVDGIIGSRA 74

Query: 66  RSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLIDAANG 125
             DATGMEYLIKWK+GHSP+WV S+FIAK +VA+YE PWWTAAKKADESALKSLID+ + 
Sbjct: 75  LPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDSGDE 134

Query: 126 RDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYVKPGTV 185
           RDFD+VD DGRTALLFV+GLGS  CVR+LA+ GVNL+HRD  GGFTALHMA GYVKP TV
Sbjct: 135 RDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSGGFTALHMAAGYVKPETV 194

Query: 186 ELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVE 245
           ELLV+LGADPEI+D++GRT L LAK ILKATPRV F+RR+GLE+VI AVEKV +EYAEVE
Sbjct: 195 ELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLEKVIRAVEKVVYEYAEVE 254

Query: 246 RLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEKRLREW 305
            LL +RGKGE+LEYLVKWKDGEDNEWV VGLIA +LV D+EA LEYAVAEAVV KR+ + 
Sbjct: 255 ELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAGLEYAVAEAVVGKRVGDD 314

Query: 306 GR 308
           G+
Sbjct: 315 GK 316

[Close]
BLAST of Carg25748 vs. TrEMBL
Match: tr|A0A1S3BHX6|A0A1S3BHX6_CUCME (signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490246 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 1.5e-121
Identity = 220/290 (75.86%), Postives = 255/290 (87.93%), Query Frame = 0 

Query: 18  IPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAIIGSRARSDATGMEYLIK 77
           IPHLNLRRNF  FT YA+Q+++   Q+T+KPED+ES+GEVD IIGSRA  DATGMEYLIK
Sbjct: 31  IPHLNLRRNFTHFTAYAVQSDQPITQQTYKPEDDESYGEVDGIIGSRALPDATGMEYLIK 90

Query: 78  WKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLIDAANGRDFDSVDGDGRT 137
           WK+GHSP+WV S+FIAK +VA+YE PWWTAAKKAD+SAL+SLID+ + RDFD+VD DGRT
Sbjct: 91  WKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADKSALESLIDSGDERDFDAVDEDGRT 150

Query: 138 ALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYVKPGTVELLVDLGADPEI 197
           ALLFV+GLGS  CVR+LAE GVNL+HRD  GGFTALHMA GYVKP TVELLV+LGADPEI
Sbjct: 151 ALLFVSGLGSVECVRILAEAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVELGADPEI 210

Query: 198 EDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVERLLGRRGKGEDL 257
           ED++GRT L LAK ILKATPRV F+RR+GLE+VIGAVEKV +EYAEVE LL +RGKGE+L
Sbjct: 211 EDEKGRTALELAKEILKATPRVQFMRRLGLEKVIGAVEKVVYEYAEVEELLEKRGKGENL 270

Query: 258 EYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEKRLREWGR 308
           EYLVKWKDGEDNEWV VGLIA +LVAD+EA LEYAVAEAVV KR+ + G+
Sbjct: 271 EYLVKWKDGEDNEWVKVGLIAEDLVADYEAGLEYAVAEAVVGKRVGDEGK 320

[Close]
BLAST of Carg25748 vs. TrEMBL
Match: tr|V4SA78|V4SA78_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10028628mg PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.8e-95
Identity = 180/311 (57.88%), Postives = 229/311 (73.63%), Query Frame = 0 

Query: 6   LCPKQPLPSPSRI------PHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDA 65
           L PK P P+   +      PH  L         +A+Q  +     T    D+ES+GEV  
Sbjct: 16  LLPKIPPPASQFLHIKPPQPHGKLHST----ASFAIQNQQQTQYGTTDQNDDESYGEVSK 75

Query: 66  IIGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSL 125
           IIGSRA  DATGMEYLI+WK+GH+P+WV  ++IAK +VA+YE+PWWTAAKKAD++ALK +
Sbjct: 76  IIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYESPWWTAAKKADDAALKEI 135

Query: 126 IDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGY 185
           I+A +GRD D+VD DGRTALLFV+GLGSE CVR+LAE G +L+HRD  GG TALHMA GY
Sbjct: 136 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 195

Query: 186 VKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEK 245
           VKPG  +LL++LGAD ++EDD+G TPL LAK IL+ TP+   + F RR+GLE VI  +E+
Sbjct: 196 VKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQFARRLGLEAVIRNLEE 255

Query: 246 VCFEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEA 305
             FEYAEV+ +L +RGKG+ LEYLVKW+DG DNEWV VG IA +LV D+EA LEYAVAE 
Sbjct: 256 AVFEYAEVQEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVTDYEAGLEYAVAEG 315

Query: 306 VVEKRLREWGR 308
           V+ KR+ + G+
Sbjct: 316 VLGKRMGDDGK 322

[Close]
BLAST of Carg25748 vs. TrEMBL
Match: tr|A0A067FLG7|A0A067FLG7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016433mg PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.8e-95
Identity = 180/311 (57.88%), Postives = 229/311 (73.63%), Query Frame = 0 

Query: 6   LCPKQPLPSPSRI------PHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDA 65
           L PK P P+   +      PH  L         +A+Q  +     T    D+ES+GEV  
Sbjct: 16  LLPKIPPPASQFLHIKPPQPHGKLHST----ASFAIQNQQQTQYGTTDQNDDESYGEVSK 75

Query: 66  IIGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSL 125
           IIGSRA  DATGMEYLI+WK+GH+P+WV  ++IAK +VA+YE+PWWTAAKKAD++ALK +
Sbjct: 76  IIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYESPWWTAAKKADDAALKEI 135

Query: 126 IDAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGY 185
           I+A +GRD D+VD DGRTALLFV+GLGSE CVR+LAE G +L+HRD  GG TALHMA GY
Sbjct: 136 IEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHRDSGGGLTALHMAAGY 195

Query: 186 VKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEK 245
           VKPG  +LL++LGAD ++EDD+G TPL LAK IL+ TP+   + F RR+GLE VI  +E+
Sbjct: 196 VKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQFARRLGLEAVIRNLEE 255

Query: 246 VCFEYAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEA 305
             FEYAEV+ +L +RGKG+ LEYLVKW+DG DNEWV VG IA +LV D+EA LEYAVAE 
Sbjct: 256 AVFEYAEVQEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDLVTDYEAGLEYAVAEG 315

Query: 306 VVEKRLREWGR 308
           V+ KR+ + G+
Sbjct: 316 VLGKRMGDDGK 322

[Close]
BLAST of Carg25748 vs. TrEMBL
Match: tr|V7ADE1|V7ADE1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G025300g PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.3e-95
Identity = 177/302 (58.61%), Postives = 221/302 (73.18%), Query Frame = 0 

Query: 8   PKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAIIGSRARS 67
           PK        +P  N    F+  T  A+Q  +  A    K  ++ES+GEV  IIGSRA  
Sbjct: 70  PKHFFKQQPFLPIPNNPTRFRLVT-AAIQNQQQEAAAASKDTEDESYGEVKGIIGSRALD 129

Query: 68  DATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLIDAANGRD 127
            A GMEYLI+WK+GH+P+WV ++FIAK +VA+YE PWWTAAKKADESAL++L+D+ +GRD
Sbjct: 130 TAAGMEYLIEWKDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALRNLVDSGDGRD 189

Query: 128 FDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYVKPGTVEL 187
            D+VD DGRTALLFVAGLGSEPCV++LAE G NLDHRD  GG  ALHMA GYV+PG  +L
Sbjct: 190 VDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKL 249

Query: 188 LVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEV 247
           L+D GADPE+ DD+GRT L LA+ ILKATP+   + F RR+GLE V+  +E   FEY E 
Sbjct: 250 LLDFGADPEVADDRGRTALDLAREILKATPKGNPMQFGRRIGLEGVVRVLEGAVFEYVEA 309

Query: 248 ERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEKRLRE 307
           + +L +RGKGE+LEYLV+WKDGE NEWV    +A +LV D EA LEYAVAEAV+ KR+ +
Sbjct: 310 QEILEQRGKGENLEYLVRWKDGEANEWVKAKFVAEDLVRDHEAGLEYAVAEAVLAKRVAD 369

The following BLAST results are available for this feature:
BLAST of Carg25748 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022969184.12.0e-17095.44signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita maxima... [more]
XP_004153574.14.8e-12474.83PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sa... [more]
XP_008447899.12.2e-12175.86PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis me... [more]
XP_023529738.11.2e-11973.14signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo s... [more]
XP_022135674.11.8e-11067.85signal recognition particle 43 kDa protein, chloroplastic [Momordica charantia][more]
BLAST of Carg25748 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47450.17.5e-6348.64chloroplast signal recognition particle component (CAO)[more]
AT3G57130.11.2e-0433.33Ankyrin repeat family protein / BTB/POZ domain-containing protein[more]
AT3G23280.12.7e-0431.03XB3 ortholog 5 in Arabidopsis thaliana[more]
AT5G13530.12.7e-0433.33protein kinases;ubiquitin-protein ligases[more]
BLAST of Carg25748 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22265|SR43C_ARATH1.4e-6148.64Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian... [more]
sp|Q8LSQ2|SR43C_ORYSJ1.1e-5038.05Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati... [more]
sp|Q9VL06|UFD4_DROME4.7e-0628.43E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2... [more]
sp|Q69ZR2|HECD1_MOUSE8.1e-0627.45E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2[more]
sp|Q9ULT8|HECD1_HUMAN8.9e-0529.47E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=3[more]
BLAST of Carg25748 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K634|A0A0A0K634_CUCSA3.2e-12474.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1[more]
tr|A0A1S3BHX6|A0A1S3BHX6_CUCME1.5e-12175.86signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=365... [more]
tr|V4SA78|V4SA78_9ROSI1.8e-9557.88Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10028628mg PE=4 ... [more]
tr|A0A067FLG7|A0A067FLG7_CITSI1.8e-9557.88Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016433mg PE=4 SV=1[more]
tr|V7ADE1|V7ADE1_PHAVU5.3e-9558.61Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G025300g PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0080085signal recognition particle, chloroplast targeting
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0009416response to light stimulus
GO:0045038protein import into chloroplast thylakoid membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf
IPR030300CPSRP43
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
IPR000953Chromo/chromo_shadow_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0009416 response to light stimulus
cellular_component GO:0009507 chloroplast
cellular_component GO:0080085 signal recognition particle, chloroplast targeting
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25748-RACarg25748-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 240..290
e-value: 6.7E-9
score: 45.6
coord: 53..105
e-value: 0.0042
score: 26.3
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 242..307
score: 9.372
IPR000953Chromo/chromo shadow domainCDDcd00024CHROMOcoord: 56..87
e-value: 6.64966E-4
score: 36.0879
IPR000953Chromo/chromo shadow domainCDDcd00024CHROMOcoord: 243..288
e-value: 3.25052E-4
score: 36.8583
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 168..197
e-value: 0.018
score: 24.2
coord: 99..130
e-value: 3300.0
score: 1.1
coord: 134..163
e-value: 47.0
score: 12.8
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 134..166
score: 9.217
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 168..200
score: 10.659
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 52..99
e-value: 7.5E-12
score: 46.5
coord: 236..291
e-value: 6.9E-20
score: 72.3
NoneNo IPR availablePANTHERPTHR24128FAMILY NOT NAMEDcoord: 11..303
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 107..199
e-value: 8.4E-10
score: 39.0
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 124..209
score: 21.853
IPR020683Ankyrin repeat-containing domainCDDcd00204ANKcoord: 107..209
e-value: 4.30617E-19
score: 80.1202
IPR036770Ankyrin repeat-containing domain superfamilyGENE3DG3DSA:1.25.40.20coord: 100..235
e-value: 6.6E-30
score: 105.4
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILYSSF48403Ankyrin repeatcoord: 99..210
IPR030300Signal recognition particle 43kDa proteinPANTHERPTHR24128:SF11SUBFAMILY NOT NAMEDcoord: 11..303
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 50..104
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 240..288