Carg26367 (gene) Silver-seed gourd

Overview
NameCarg26367
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsignal recognition particle 43 kDa protein, chloroplastic
LocationCucurbita_argyrosperma_scaffold_334 : 116670 .. 117701 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCGTCTTCGTCAACCAGTCACTCTCCCGCCTCAAACTTCCCCCTAAACCCCCTCTCCCTAAACTCCCTCTCCCTAAACTCCCCTCTCCAATTCTCCATCTCCATCTCCGCCGCACCTTCAAATCTTTCACCGCCTACGCTGTCAACGAGCCCCTCACTCAACAAACCCAGCAACCAGATAACTTCCCGGAAGACGACGAATCCTACGGCGAGGTCGACGGAATCATCGGCAGCCGCGCCCTGGCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGACGGGCATTCTCCGTCGTGGGTCCCTTCCGATTTCATTGCTAAAGACGTCGTCGCTGAGTACGAAACCCCCTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCCCTCAAGTCACTTATCGACGCCGCTGACAGCCGCGATTTCAACGCTGTGGACGAAGACGGCAGAACCGCACTCCTCTTCGTCGCTGGACTCGGGTCGGAGCCTTGCATTAGAATTTTAGCTGAGGCCGGCGCGGATCTCGACCACCGCGACAAGAGCGGCGGGTTCACTGCTCTGCATATGGCCGCCGGCTACGTAAAACCCGGCACGGTGGAGCTATTACTGGAATTGGGAGCAGATCCGGAGGTGCAAGACGACAAGGGTCGGACGCCATTAGTCCTGGCAAGGGAGATTGTGAAAGCGACGCCGAGGGTTCAATTTGCAAGGAGGTTGGGGCTGGAGAGAGTGATCGGAGCGCTGGAGAGAGTGGTTTTCGAGTTCGCGGAGGTGGAGGAGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGACGGAGAAGATAATGAATGGGTGAAAGCGGCGCTGATTGCGGAGGATTTGGTGGCGGATTTCGAAGCCGGATTGGAATACGCGGTGGCGGAAGCGGTGGTCGGAAAGAGAGTTGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGATGCCACGTGGGAGCCTGAGGGTTAA

mRNA sequence

ATGGACGCCGTCTTCGTCAACCAGTCACTCTCCCGCCTCAAACTTCCCCCTAAACCCCCTCTCCCTAAACTCCCTCTCCCTAAACTCCCCTCTCCAATTCTCCATCTCCATCTCCGCCGCACCTTCAAATCTTTCACCGCCTACGCTGTCAACGAGCCCCTCACTCAACAAACCCAGCAACCAGATAACTTCCCGGAAGACGACGAATCCTACGGCGAGGTCGACGGAATCATCGGCAGCCGCGCCCTGGCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGACGGGCATTCTCCGTCGTGGGTCCCTTCCGATTTCATTGCTAAAGACGTCGTCGCTGAGTACGAAACCCCCTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCCCTCAAGTCACTTATCGACGCCGCTGACAGCCGCGATTTCAACGCTGTGGACGAAGACGGCAGAACCGCACTCCTCTTCGTCGCTGGACTCGGGTCGGAGCCTTGCATTAGAATTTTAGCTGAGGCCGGCGCGGATCTCGACCACCGCGACAAGAGCGGCGGGTTCACTGCTCTGCATATGGCCGCCGGCTACGTAAAACCCGGCACGGTGGAGCTATTACTGGAATTGGGAGCAGATCCGGAGGTGCAAGACGACAAGGGTCGGACGCCATTAGTCCTGGCAAGGGAGATTGTGAAAGCGACGCCGAGGGTTCAATTTGCAAGGAGGTTGGGGCTGGAGAGAGTGATCGGAGCGCTGGAGAGAGTGGTTTTCGAGTTCGCGGAGGTGGAGGAGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGACGGAGAAGATAATGAATGGGTGAAAGCGGCGCTGATTGCGGAGGATTTGGTGGCGGATTTCGAAGCCGGATTGGAATACGCGGTGGCGGAAGCGGTGGTCGGAAAGAGAGTTGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGATGCCACGTGGGAGCCTGAGGGTTAA

Coding sequence (CDS)

ATGGACGCCGTCTTCGTCAACCAGTCACTCTCCCGCCTCAAACTTCCCCCTAAACCCCCTCTCCCTAAACTCCCTCTCCCTAAACTCCCCTCTCCAATTCTCCATCTCCATCTCCGCCGCACCTTCAAATCTTTCACCGCCTACGCTGTCAACGAGCCCCTCACTCAACAAACCCAGCAACCAGATAACTTCCCGGAAGACGACGAATCCTACGGCGAGGTCGACGGAATCATCGGCAGCCGCGCCCTGGCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGACGGGCATTCTCCGTCGTGGGTCCCTTCCGATTTCATTGCTAAAGACGTCGTCGCTGAGTACGAAACCCCCTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCCCTCAAGTCACTTATCGACGCCGCTGACAGCCGCGATTTCAACGCTGTGGACGAAGACGGCAGAACCGCACTCCTCTTCGTCGCTGGACTCGGGTCGGAGCCTTGCATTAGAATTTTAGCTGAGGCCGGCGCGGATCTCGACCACCGCGACAAGAGCGGCGGGTTCACTGCTCTGCATATGGCCGCCGGCTACGTAAAACCCGGCACGGTGGAGCTATTACTGGAATTGGGAGCAGATCCGGAGGTGCAAGACGACAAGGGTCGGACGCCATTAGTCCTGGCAAGGGAGATTGTGAAAGCGACGCCGAGGGTTCAATTTGCAAGGAGGTTGGGGCTGGAGAGAGTGATCGGAGCGCTGGAGAGAGTGGTTTTCGAGTTCGCGGAGGTGGAGGAGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGACGGAGAAGATAATGAATGGGTGAAAGCGGCGCTGATTGCGGAGGATTTGGTGGCGGATTTCGAAGCCGGATTGGAATACGCGGTGGCGGAAGCGGTGGTCGGAAAGAGAGTTGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGATGCCACGTGGGAGCCTGAGGGTTAA

Protein sequence

MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Homology
[Close]
BLAST of Carg26367 vs. NCBI nr
Match: XP_022928488.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 572.4 bits (1474), Expect = 1.0e-159
Identity = 330/343 (96.21%), Postives = 330/343 (96.21%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLSRLKLPPKPPL             HLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 57  MDAVFVNQSLSRLKLPPKPPL-----PKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 116

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 117 PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 176

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH
Sbjct: 177 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 236

Query: 181 RDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQFAR 240
           RDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQFAR
Sbjct: 237 RDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQFAR 296

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 297 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 356

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 357 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 394

[Close]
BLAST of Carg26367 vs. NCBI nr
Match: XP_022989400.1 (signal recognition particle 43 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 567.4 bits (1461), Expect = 3.3e-158
Identity = 326/343 (95.04%), Postives = 329/343 (95.92%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLS LKLPPKPPL             HLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 50  MDAVFVNQSLSSLKLPPKPPL-----PKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 109

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSR+LADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 110 PDNFPEDDESYGEVDGIIGSRSLADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 169

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPC+RILAEAGADLDH
Sbjct: 170 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCVRILAEAGADLDH 229

Query: 181 RDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQFAR 240
           RDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQFAR
Sbjct: 230 RDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQFAR 289

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 290 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 349

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKR+GDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 350 DFEAGLEYAVAEAVVGKRLGDDGKMEYLVKWTDIEDATWEPEG 387

[Close]
BLAST of Carg26367 vs. NCBI nr
Match: XP_023529738.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 560.8 bits (1444), Expect = 3.1e-156
Identity = 292/345 (84.64%), Postives = 295/345 (85.51%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHL--HLRRTFKSFTAYAVNEPLTQQT 60
           MDAVFVNQSLSRLKLPPKPPL             HL  HLRRTFKSFTAYAVNEPLTQQT
Sbjct: 1   MDAVFVNQSLSRLKLPPKPPL-----PKLPSPILHLXXHLRRTFKSFTAYAVNEPLTQQT 60

Query: 61  QQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
           QQPD+FPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE
Sbjct: 61  QQPDDFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADL 180
           TPWWTAAKKADESALKSLIDAADSRDFNAVDED RTALLFVAGLGSEPC+RILAEAGA+L
Sbjct: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDSRTALLFVAGLGSEPCVRILAEAGANL 180

Query: 181 DHRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQF 240
           DHRDKSG                                  RTPLVLAREIVKATPRVQF
Sbjct: 181 DHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQF 240

Query: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300
           ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL
Sbjct: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300

Query: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 340

[Close]
BLAST of Carg26367 vs. NCBI nr
Match: XP_004153574.1 (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus] >KGN43296.1 hypothetical protein Csa_7G018780 [Cucumis sativus])

HSP 1 Score: 478.4 bits (1230), Expect = 2.0e-131
Identity = 249/343 (72.59%), Postives = 272/343 (79.30%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAV--NEPLTQQT 60
           M+AVF+NQSLSRLKLPPK PL             HL+LRR F  FTAYAV  ++P+TQQT
Sbjct: 1   MEAVFLNQSLSRLKLPPKTPL------PFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQT 60

Query: 61  QQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
           Q+    PEDDESYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE
Sbjct: 61  QK----PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADL 180
           TPWWTAAKKADESALKSLID+ D RDF+AVDEDGRTALLFV+GLGS  C+RILA+AG +L
Sbjct: 121 TPWWTAAKKADESALKSLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNL 180

Query: 181 DHRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQF 240
           +HRD SG                                  RT L LA+EI+KATPRVQF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIDDEKGRTALELAKEILKATPRVQF 240

Query: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300
            RRLGLE+VI A+E+VV+E+AEVEELLEKRGKGENLEYLVKWKDGEDNEWVK  LIAEDL
Sbjct: 241 MRRLGLEKVIRAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEP 342
           V D+EAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDI+DATWEP
Sbjct: 301 VGDYEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEP 333

[Close]
BLAST of Carg26367 vs. NCBI nr
Match: XP_008447899.1 (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126
Identity = 252/343 (73.47%), Postives = 277/343 (80.76%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAV--NEPLTQQT 60
           M+AVF+NQSLSRLK       XXXXXXXXXX   HL+LRR F  FTAYAV  ++P+TQQT
Sbjct: 1   MEAVFLNQSLSRLK--XXXXXXXXXXXXXXXTIPHLNLRRNFTHFTAYAVQSDQPITQQT 60

Query: 61  QQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
            +    PEDDESYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE
Sbjct: 61  YK----PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADL 180
           TPWWTAAKKAD+SAL+SLID+ D RDF+AVDEDGRTALLFV+GLGS  C+RILAEAG +L
Sbjct: 121 TPWWTAAKKADKSALESLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILAEAGVNL 180

Query: 181 DHRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQF 240
           +HRD SG                                  RT L LA+EI+KATPRVQF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTALELAKEILKATPRVQF 240

Query: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300
            RRLGLE+VIGA+E+VV+E+AEVEELLEKRGKGENLEYLVKWKDGEDNEWVK  LIAEDL
Sbjct: 241 MRRLGLEKVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEP 342
           VAD+EAGLEYAVAEAVVGKRVGD+GKMEYLVKWTDI+DATWEP
Sbjct: 301 VADYEAGLEYAVAEAVVGKRVGDEGKMEYLVKWTDIQDATWEP 337

[Close]
BLAST of Carg26367 vs. TAIR10
Match: AT2G47450.1 (chloroplast signal recognition particle component (CAO))

HSP 1 Score: 320.9 bits (821), Expect = 9.8e-88
Identity = 216/347 (62.25%), Postives = 256/347 (73.78%), Query Frame = 0 

Query: 3   AVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAVNE---PLTQQTQ 62
           A+ ++QSLSR+KL P    XXXXX           +   F+     AV            
Sbjct: 12  ALVIHQSLSRIKLSPPKSSXXXXXAFSPESLPIRRIELCFRGAICAAVQRNXXXXXXXXX 71

Query: 63  QPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 122
                      YGEV+ IIGSR   +   MEYLI+WKDGHSPSWVPS +IA DVV+EYET
Sbjct: 72  XXXXXXXXXXXYGEVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLD 182
           PWWTAA+KADE AL  L+   + RD +AVDE+GRTALLFVAGLGS+ C+R+LAEAGADLD
Sbjct: 132 PWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPR---V 242
           HRD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T L LAREI+K TP+   +
Sbjct: 192 HRDMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALELAREILKTTPKGNPM 251

Query: 243 QFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAE 302
           QF RR+GLE+VI  LE  VFE+AEV+E++EKRGKG+++EYLV+WKDG D EWVK   +AE
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVVGKRVGDDGK-MEYLVKWTDIEDATWEPE 343
           D+  D+E GLEYAVAE+V+GKRVGDDGK +EYLVKWTD+ DATWEP+
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQ 354

[Close]
BLAST of Carg26367 vs. Swiss-Prot
Match: sp|O22265|SR43C_ARATH (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAO PE=1 SV=2)

HSP 1 Score: 320.9 bits (821), Expect = 1.8e-86
Identity = 216/347 (62.25%), Postives = 256/347 (73.78%), Query Frame = 0 

Query: 3   AVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAVNE---PLTQQTQ 62
           A+ ++QSLSR+KL P    XXXXX           +   F+     AV            
Sbjct: 12  ALVIHQSLSRIKLSPPKSSXXXXXAFSPESLPIRRIELCFRGAICAAVQRNXXXXXXXXX 71

Query: 63  QPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 122
                      YGEV+ IIGSR   +   MEYLI+WKDGHSPSWVPS +IA DVV+EYET
Sbjct: 72  XXXXXXXXXXXYGEVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLD 182
           PWWTAA+KADE AL  L+   + RD +AVDE+GRTALLFVAGLGS+ C+R+LAEAGADLD
Sbjct: 132 PWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPR---V 242
           HRD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T L LAREI+K TP+   +
Sbjct: 192 HRDMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALELAREILKTTPKGNPM 251

Query: 243 QFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAE 302
           QF RR+GLE+VI  LE  VFE+AEV+E++EKRGKG+++EYLV+WKDG D EWVK   +AE
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVVGKRVGDDGK-MEYLVKWTDIEDATWEPE 343
           D+  D+E GLEYAVAE+V+GKRVGDDGK +EYLVKWTD+ DATWEP+
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQ 354

[Close]
BLAST of Carg26367 vs. Swiss-Prot
Match: sp|Q8LSQ2|SR43C_ORYSJ (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.0e-73
Identity = 196/359 (54.60%), Postives = 242/359 (67.41%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           M+AV  + SLSRL    KPP                 LR   +  TA AV +  T     
Sbjct: 1   MEAVLRHPSLSRL----KPPNPNAQRTPALSITVPFRLRLPNRRLTAAAVFQDQTNPRNP 60

Query: 61  PDNFPEDDESYGEVDGIIGSRALAD-----------ATGMEYLIKWKDGHSPSWVPSDFI 120
                +DDE+YGEVD I+ SR + +            T  EYL++WKDGH PSW+P++ I
Sbjct: 61  ASKGGDDDEAYGEVDRIVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAEAI 120

Query: 121 AKDVVAEYETPWWTAAKKADESALKSLI-DAADSRDFNAVDEDGRTALLFVAGLGSEPCI 180
           A DVVAEYETPWWTAAKKAD + + +L+ D    RD +A D  GRTA+ F AGLGSE C+
Sbjct: 121 AADVVAEYETPWWTAAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECV 180

Query: 181 RILAEAGADLDHRDKSG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAR 240
           R LAEAGAD+   +++G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPL L +
Sbjct: 181 RALAEAGADVGRPERAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLELVQ 240

Query: 241 EIVKATPR---VQFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGE 300
           +++  TP+     F RRL LE     LE+ V+E+ EVE++++ RG+G+  EYLV+W+DG 
Sbjct: 241 DVLAKTPKGNPATFERRLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRDGG 300

Query: 301 DNEWVKAALIAEDLVADFEAGLEYAVAEAVVGKR--VGDDGKMEYLVKWTDIEDATWEP 342
           D EWV+AA +AEDLV DF+AGLEYAVAEAVV KR     +GK EYLVKW DIE+ATWEP
Sbjct: 301 DREWVRAAWVAEDLVKDFDAGLEYAVAEAVVNKREAAEGEGKWEYLVKWVDIEEATWEP 355

[Close]
BLAST of Carg26367 vs. TrEMBL
Match: tr|A0A0A0K634|A0A0A0K634_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.3e-131
Identity = 249/343 (72.59%), Postives = 272/343 (79.30%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAV--NEPLTQQT 60
           M+AVF+NQSLSRLKLPPK PL             HL+LRR F  FTAYAV  ++P+TQQT
Sbjct: 1   MEAVFLNQSLSRLKLPPKTPL------PFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQT 60

Query: 61  QQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
           Q+    PEDDESYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE
Sbjct: 61  QK----PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADL 180
           TPWWTAAKKADESALKSLID+ D RDF+AVDEDGRTALLFV+GLGS  C+RILA+AG +L
Sbjct: 121 TPWWTAAKKADESALKSLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNL 180

Query: 181 DHRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQF 240
           +HRD SG                                  RT L LA+EI+KATPRVQF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIDDEKGRTALELAKEILKATPRVQF 240

Query: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300
            RRLGLE+VI A+E+VV+E+AEVEELLEKRGKGENLEYLVKWKDGEDNEWVK  LIAEDL
Sbjct: 241 MRRLGLEKVIRAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEP 342
           V D+EAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDI+DATWEP
Sbjct: 301 VGDYEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEP 333

[Close]
BLAST of Carg26367 vs. TrEMBL
Match: tr|A0A1S3BHX6|A0A1S3BHX6_CUCME (signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490246 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.0e-126
Identity = 252/343 (73.47%), Postives = 277/343 (80.76%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAV--NEPLTQQT 60
           M+AVF+NQSLSRLK       XXXXXXXXXX   HL+LRR F  FTAYAV  ++P+TQQT
Sbjct: 1   MEAVFLNQSLSRLK--XXXXXXXXXXXXXXXTIPHLNLRRNFTHFTAYAVQSDQPITQQT 60

Query: 61  QQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
            +    PEDDESYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE
Sbjct: 61  YK----PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADL 180
           TPWWTAAKKAD+SAL+SLID+ D RDF+AVDEDGRTALLFV+GLGS  C+RILAEAG +L
Sbjct: 121 TPWWTAAKKADKSALESLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILAEAGVNL 180

Query: 181 DHRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPRVQF 240
           +HRD SG                                  RT L LA+EI+KATPRVQF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTALELAKEILKATPRVQF 240

Query: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300
            RRLGLE+VIGA+E+VV+E+AEVEELLEKRGKGENLEYLVKWKDGEDNEWVK  LIAEDL
Sbjct: 241 MRRLGLEKVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEP 342
           VAD+EAGLEYAVAEAVVGKRVGD+GKMEYLVKWTDI+DATWEP
Sbjct: 301 VADYEAGLEYAVAEAVVGKRVGDEGKMEYLVKWTDIQDATWEP 337

[Close]
BLAST of Carg26367 vs. TrEMBL
Match: tr|A0A2I4EWT8|A0A2I4EWT8_9ROSI (signal recognition particle 43 kDa protein, chloroplastic OS=Juglans regia OX=51240 GN=LOC108993409 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 3.6e-108
Identity = 216/349 (61.89%), Postives = 250/349 (71.63%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRR---TFKSFTAYAVNEPLTQQ 60
           MDA+ ++QSLSRLKLP  P               H+ L+    T +SF  +AV    +Q+
Sbjct: 1   MDALTLSQSLSRLKLPTIP--------SSFPSQQHITLKPSCCTTRSFIVFAVQNQDSQK 60

Query: 61  TQQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEY 120
           T   +    +DESYGEV+ IIGSRAL   TGMEYLI+WKDGHSPSWVPSDFIAKDVVAEY
Sbjct: 61  TLARNT--NEDESYGEVNKIIGSRALEGGTGMEYLIEWKDGHSPSWVPSDFIAKDVVAEY 120

Query: 121 ETPWWTAAKKADESALKSLIDA-ADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGA 180
           ETPWWTAAKKADE+A + LI A  D RD +AVD DGRTAL+FVAGLGSEPC+++LAEAGA
Sbjct: 121 ETPWWTAAKKADEAAFQRLISAEEDLRDVDAVDPDGRTALIFVAGLGSEPCVKLLAEAGA 180

Query: 181 DLDHRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPR- 240
           ++DHRD SG                                  RTPL LA+EI++ TP+ 
Sbjct: 181 NIDHRDNSGGLTALHMAAGYVQPGVVKQLLELGADPEVEDDKRRTPLDLAKEILRVTPKG 240

Query: 241 --VQFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAAL 300
             VQFARRL LERVI  LE  VFE+AEVEE++EKRGKG+++EYLVKWKDG DNEWVKA L
Sbjct: 241 NPVQFARRLALERVIRVLEEAVFEYAEVEEIMEKRGKGDHVEYLVKWKDGGDNEWVKAGL 300

Query: 301 IAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPE 343
           I EDLV D+EAGLEYAVAE VVGKRVGDDGKMEYLVKWTD+EDATWEPE
Sbjct: 301 IGEDLVRDYEAGLEYAVAEGVVGKRVGDDGKMEYLVKWTDMEDATWEPE 339

[Close]
BLAST of Carg26367 vs. TrEMBL
Match: tr|A0A2P5AIL8|A0A2P5AIL8_PARAD (Signal recognition particle 43 kDa protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_328690 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.3e-106
Identity = 215/354 (60.73%), Postives = 246/354 (69.49%), Query Frame = 0 

Query: 1   MDAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFK-SFTAYAVNEPLTQQTQ 60
           M+A+FVNQSLSRLK+     L              + LR   K S T  +V +   +Q Q
Sbjct: 1   MEALFVNQSLSRLKI----LLSLNLTSTSSFTPQSIRLRPAQKPSLTTVSVIQNQEKQFQ 60

Query: 61  Q-PDNFPED-------DESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAK 120
           +     P D       DESYGEV  IIGSRAL   TGMEYLI+WKDGH+PSWVPSD+IAK
Sbjct: 61  ETTKTIPLDKKVKVNEDESYGEVSKIIGSRALEGGTGMEYLIEWKDGHTPSWVPSDYIAK 120

Query: 121 DVVAEYETPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRIL 180
           DVVAEYETPWWTAAKKADE+ALK LI+A D RD + VD DGRTALLFV+GLGSEPC+R+L
Sbjct: 121 DVVAEYETPWWTAAKKADENALKQLIEADDGRDVDTVDPDGRTALLFVSGLGSEPCVRLL 180

Query: 181 AEAGADLDHRDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVK 240
           AEAGADLDHRD SG                                  RTPL LAREI+K
Sbjct: 181 AEAGADLDHRDNSGGLTSLHMAAGYARPGVAKLLLELGADPEAEDDRRRTPLDLAREILK 240

Query: 241 ATPR---VQFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEW 300
            TP+   +QF RR+GLE VIGALE  VFE+AEV+E++EKRGKG N+EYLV+WKDGE NEW
Sbjct: 241 VTPKGNPMQFGRRIGLEGVIGALEGAVFEYAEVQEIMEKRGKGNNVEYLVRWKDGEVNEW 300

Query: 301 VKAALIAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPE 343
           VKA  +AEDLV D+EAGLEYAVAE VVGKRVGDDGK EYLVKWTD ++ATWEPE
Sbjct: 301 VKARYVAEDLVRDYEAGLEYAVAEGVVGKRVGDDGKNEYLVKWTDTDEATWEPE 350

[Close]
BLAST of Carg26367 vs. TrEMBL
Match: tr|V4SA78|V4SA78_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10028628mg PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 204/344 (59.30%), Postives = 240/344 (69.77%), Query Frame = 0 

Query: 2   DAVFVNQSLSRLKLPPKPPLXXXXXXXXXXXXXHLHLRRTFKSFTAYAVNEPLTQQTQQP 61
           D++ +NQSL+RLKL PK P              H  L  T     ++A+     QQTQ  
Sbjct: 3   DSLLLNQSLARLKLLPKIPPPASQFLHIKPPQPHGKLHST----ASFAIQN--QQQTQYG 62

Query: 62  DNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPW 121
                DDESYGEV  IIGSRAL DATGMEYLI+WKDGH+PSWVP D+IAKDVVAEYE+PW
Sbjct: 63  TTDQNDDESYGEVSKIIGSRALEDATGMEYLIEWKDGHAPSWVPQDYIAKDVVAEYESPW 122

Query: 122 WTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHR 181
           WTAAKKAD++ALK +I+A D RD +AVD DGRTALLFV+GLGSE C+R+LAEAG DL+HR
Sbjct: 123 WTAAKKADDAALKEIIEAGDGRDVDAVDNDGRTALLFVSGLGSEACVRVLAEAGTDLNHR 182

Query: 182 DKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLVLAREIVKATPR---VQF 241
           D  G                                   TPL LA+EI++ TP+   +QF
Sbjct: 183 DSGGGLTALHMAAGYVKPGVAKLLLELGADADVEDDRGLTPLALAKEILRVTPKGNPMQF 242

Query: 242 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 301
           ARRLGLE VI  LE  VFE+AEV+E+LEKRGKG+ LEYLVKW+DG DNEWVK   IAEDL
Sbjct: 243 ARRLGLEAVIRNLEEAVFEYAEVQEILEKRGKGDQLEYLVKWRDGGDNEWVKVGFIAEDL 302

Query: 302 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPE 343
           V D+EAGLEYAVAE V+GKR+GDDGK E+LVKWTDI++ATWEPE
Sbjct: 303 VTDYEAGLEYAVAEGVLGKRMGDDGKREFLVKWTDIDEATWEPE 340

The following BLAST results are available for this feature:
BLAST of Carg26367 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928488.11.0e-15996.21signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita moscha... [more]
XP_022989400.13.3e-15895.04signal recognition particle 43 kDa protein, chloroplastic [Cucurbita maxima][more]
XP_023529738.13.1e-15684.64signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo s... [more]
XP_004153574.12.0e-13172.59PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis sa... [more]
XP_008447899.11.5e-12673.47PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis me... [more]
BLAST of Carg26367 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47450.19.8e-8862.25chloroplast signal recognition particle component (CAO)[more]
BLAST of Carg26367 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22265|SR43C_ARATH1.8e-8662.25Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian... [more]
sp|Q8LSQ2|SR43C_ORYSJ1.0e-7354.60Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati... [more]
BLAST of Carg26367 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K634|A0A0A0K634_CUCSA1.3e-13172.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1[more]
tr|A0A1S3BHX6|A0A1S3BHX6_CUCME1.0e-12673.47signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=365... [more]
tr|A0A2I4EWT8|A0A2I4EWT8_9ROSI3.6e-10861.89signal recognition particle 43 kDa protein, chloroplastic OS=Juglans regia OX=51... [more]
tr|A0A2P5AIL8|A0A2P5AIL8_PARAD3.3e-10660.73Signal recognition particle 43 kDa protein OS=Parasponia andersonii OX=3476 GN=P... [more]
tr|V4SA78|V4SA78_9ROSI1.7e-10559.30Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10028628mg PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0080085signal recognition particle, chloroplast targeting
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0009416response to light stimulus
GO:0045038protein import into chloroplast thylakoid membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf
IPR030300CPSRP43
IPR020683Ankyrin_rpt-contain_dom
IPR036770Ankyrin_rpt-contain_sf
IPR002110Ankyrin_rpt
IPR000953Chromo/chromo_shadow_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0009416 response to light stimulus
cellular_component GO:0009507 chloroplast
cellular_component GO:0080085 signal recognition particle, chloroplast targeting
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26367-RACarg26367-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 308..343
e-value: 20.0
score: 3.6
coord: 257..307
e-value: 1.3E-8
score: 44.6
coord: 70..122
e-value: 2.0E-4
score: 30.7
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 259..288
score: 8.865
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 309..343
score: 11.526
IPR000953Chromo/chromo shadow domainCDDcd00024CHROMOcoord: 307..342
e-value: 2.31775E-5
score: 40.3251
IPR000953Chromo/chromo shadow domainCDDcd00024CHROMOcoord: 73..120
e-value: 0.00628995
score: 33.3915
IPR000953Chromo/chromo shadow domainCDDcd00024CHROMOcoord: 260..304
e-value: 2.86623E-4
score: 37.2435
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 185..214
e-value: 0.0025
score: 27.1
coord: 116..147
e-value: 340.0
score: 8.4
coord: 151..180
e-value: 8.0
score: 15.4
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 151..183
score: 10.606
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 185..217
score: 11.728
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 305..343
e-value: 3.9E-17
score: 63.6
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 255..304
e-value: 2.7E-23
score: 83.2
coord: 69..115
e-value: 1.5E-14
score: 55.2
NoneNo IPR availablePANTHERPTHR24128FAMILY NOT NAMEDcoord: 1..342
IPR036770Ankyrin repeat-containing domain superfamilyGENE3DG3DSA:1.25.40.20coord: 116..254
e-value: 1.6E-35
score: 123.7
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILYSSF48403Ankyrin repeatcoord: 117..228
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 124..216
e-value: 3.4E-10
score: 40.3
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 116..226
score: 24.427
IPR020683Ankyrin repeat-containing domainCDDcd00204ANKcoord: 116..231
e-value: 3.91334E-23
score: 91.6762
IPR030300Signal recognition particle 43kDa proteinPANTHERPTHR24128:SF11SUBFAMILY NOT NAMEDcoord: 1..342
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 257..304
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 67..121
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 311..342