Lsi11G010310 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G010310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-binding protein Nova-1
Location	chr11 : 17671399 .. 17678963 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGAAAGAGAGACTTTTAGAATCCAAATTGGTTTTAAAAAGCAAAACTCAAAACGCCCTACCACCATTCGCAACAAACCCCTCCACTGCCGGCCGCGCCATTTCCCTTTTCCAACACCACACTGAATTTTGAAACCCTTTCACGCTCTCCGGATTTTCCTTCATTCCGACCGCCATGAAAGACCACGACGATGGCGAACAGCTTCACTCCGATACTAACAAGCGCAAGCTCGAAGAGAATATTCAATTGGCTAAGCAAAAAGCTCAGGAAATCGTTGCTAAGCTAGTGAGCAATGCCGAGTCCAAACGCCCTCGTTTTGAGTACGAATCCCCTGCTGTTGCCTCTACCCCACAAAACCCCCCATTATCCTCTTCGACATTTCCTGGTAAGCCATAGAAATATCTTCAATTCCTTTGCATCTAGGGCTTTTTTCTTTTTTCTTTTTTTTTTTCTTTTGAAAAGAAATTAGGTTAAGGTAATGTTCTGCTTGTCTATTTTTTTATGCTTTTGAGTTTAGTTCTTTTTTTGACTCATTTGTGGTTGCATTTAGCCTGCTTTGATAGCTTAGAATTATGGGAAGTTGGGTATATGGATAAAAGATTAACTTGTTTGATTTGTTGCACGAAAGGGAATTCGAGTGGGCCTTTGTGGAGTCCTTTTGGGCACGGAGAGGACTCATTTTGTGAAACAAAAGGGTAGTTTTTATGTGATGGAAGTTTTAAGAAGCTTTCTCACGGTCTATCAAATCAAATTTTGTTTCAAAGATTTGTCTACTTCGTGGGGGTGGACATCAATTCATCGGCCACCTTATCCAAGAGTTCAGAAATCAATTTTGGAGAGAATTATGGAGTTTGTACCCTATGGTGTAGGCATTCTTCTTATTGTAGTCTGTAGATTTCCACCGCTGTACTATTTGCTAGATAATTGGGACGTTGATGAAAATGAATTCTCTCTTTATGGGAAATTGTGGTTTGATGCAACAAGCAAATGGAAATTTCCCTTTCACGGTTAACAATACATAGCACCATGTTTTAACAACTTGGCCTTAAGCTAGGGGATCTTTTGGTTCAATCTTGCTCATGTTTTGTGATCATTTCAAGCATATATGGGAGGGAAAAAACAGGTTGGTACACAAAAGGCAGCTGATTTCTTTTATAAGGAACCAAAACTTGAGGAAAAACAAAGAAAAAAGAAAGAATGGAAGGATATCCAAAAAAAACTAGGACACAAAAGGAAGTCCCACCAAAGAAAGGTACTCCAATCGAGTGAAATAAGACCTAACGAATAGTTACAAATTTAGATGCATAGAACCTAGTGAGGGACCATACGTCACAAGGGCCCATCTCCACTCTAAATGTTCTATTGTTCCTTTCTCCACAAACCCTACATCACACAAACTCGGCTTGCCACAAAAACCTCCCCTTTTATTGAAACGGCGAATGGAGAAGTAACTTCTTGATCATCTTCCTGTAGTCTGGGCGTTTGGAACTTGAAAGCAAAACACATCAAAAGAAGTAACTGATGTGAAACTCAAAGAAGTTCCCAAAGATTTAGCCTTAAATACTAAAACAACCACATTAAAACACTTTAACTGATAGTAACTTTGATGGATAAAGTCTGCAACTTGTAATCACAATATTGGCTGTGAATAAAGAAATTAAGGTAGTAACCTCAAGAACTTGAAGTCAATAGCTAAAGGCAATAGCTACATCAATAACTCCAAACAAGTTTGCAAAGTTGTAGCTCCGAAGAATATTTTCTAGGTCTTGCTCCACCTTTCGACAAAGAATGCAACAAAACAGTCTAATCAAAGAGAGTTATTTCCTCAAAATCAAATTTAAAGTGCTCACTCGTCTACCAAACAAAGAATTTTACCTTTGAATTTTCACCTTCCACAGAGACGAGGAAACACATTCACTAAAATGAGAATGGTTGAACAAATCTTTCTTTAGGGTGCTGCTGGATCCCTCTCCTATTAGGGAGTCGGTCTTTGATGTGGTCTCGAGGATTAAGATACCAAAGAAAATCAAAATTCTTTACCTAGCAGATGTTGCTTGGTCGTGTGAACACTATGGATAGGCTTGCTAGGAAAATGGCCCCGTTACTGGGTCCTTTTTGTTGTATTCTCTGTCGGAAGGCGGAGGAAAACTTGGATCATCTTCTTTGGGGTTAGTTTGCAAGGTCTGTATGGAGTTGTCTCTTGCAGGAGTTTGACGTTCAGATTGCTGGCCAGAGGGACATTAGTGCGATGATTGGGAAGTTCCTCCTCCATCTGCCTTTTAGAGAGAAAGGCCGATTGTTGTGGTTTTCTGGAGTGGGTGCTATTTTGTAGGACATTTGGAGGGAGAGAAACAATAGGGTGTTTAGACGTATGGATAAGGACCTTAGTGAGGTTTAGTCCCTTGTGAGGTTTCATGTTTCGCTTTGGGCTTCAGTTTTGTAGCTTTTTTGTAGTTATTCTCTGGGTAACATCTTACTTAGTTGAAAGCCCTTTCTTTAGAGGTGTTGCTTTTGTGGGCTGGTTTTTTTTCCATAACCCATGGAATAGTAGACCAAGTGAGAAAAAGAAGAGAGCTCCTTGGAGCTTAATTCACTGTGGAAGGCCCCCTTGGTCTATAATGAATACAAAACTAAGTTGTCACTTGCGAAGACCTCCCTTTTGGTTGATGTTTGGATAGTATAGGAGCTACTTGCAATTGAAGTCCTGATTAATGATGATTATCTATGTAGTTAGTGACAACAAGAAATTGGTTAGTTGCAATGTGTTGGATGGTGAGATTTTTTTTGTGGAACATCACTGCTAGAAGGAACTTGTTGGAGCCTGGATGCAGAAATGGAAGATTTTGAGGCTTTGCAGGATGAAGATAGAAGAGTATGGAACATTTAGAATTCAGATAACTTCTTGTTGGAGTCTTTGTTCCAAAACCTGATTGTAAGTTGTTTTCTTCTTCATAAAGCACTCGCTCTTACAATAAAGAGGAATAACACTGCCCCGAAAATGTGAAACTCTTTGTGTGGACCGTTTGTTTTGGGAGAGTTAACATCCTGGAAGGAGCCCAAAGGATGACCTTTGCTTGCTGTCCTTCCCTTCAAACTAGTGCAATTTATGTACATTACAAAGGAGAGTTGAAATCACATCTTCTTCACTGCCAATTTACAAGGAGTTGCTGGAACTTCATCTGTGAGAGCTTCAATTTACAATTGTCCTTTCGTTCGACAACAACTAAAACCATTTCATAATTGGTTTGTGGCCACAGTCAAAAAGACAACAAAGATCCTTAACACTATTGAGGTAGGCTTATGGAGTTCTATGAACAGGGGGAAACAATAGTGTTCAACGACAAGATTAGAGGGTGGGTAGACAAGGAATATCTGTTTCTTTATTTGACAACAAAAGCATAGTAGTTTAAAAAATAATGTAAACGACTCTTCAATTTGAGGCTGTATATTGTACAATCTCTCTGTCACTGAAAATCCATTTCCTTTTTTTTTCTCCCCCTTTTCTTCTATGTTTGTTTGTTTACAATAATGGATTGTGTAACTCTTCTCTACGAAGAACTAATTGTATTAGTTTTTAGACGTATGACTATGAGCTATGTCAATGATGTAGTCTCAATTCTATTCTTATTGCCTGTTATTTGAGATTCTTTTTTGGCATGTTTAATATGCTTAATAATTCTGATTTTACTAATAATGAAATAGATGTTCATTTATTTTCATACTCAAATAACTTTGCTTCATGTCGTGTTCAGTTGCATTAAGACCTGTCAACATGCTTTGGCATCCTTGAGATTCACACTGCTTTTTGTATTCTTTAAATACTGAACTTGTAGTACACGTTTCTATTGTAAAGAAACACAAATTTCCCAATTCCCATGCTAGATCTTGCTAACTTTCAAGTGTTCAGTTTCTTCTGGTACTCCAACAGGTCCATATCATGGTTTTCAAACCACGAGTAAGAAAATAAATATTCCAAATATTAAGGTACTTGGTTTTGCCATCTTGTTTGTCAGATAGATTACCATTTGCCTACTGCTGACAAAGGTGATTTTTTTTTTTTTCAAATCTGTTTGTAGGTTGGGTTGATTATCGGGAAAGGTGGAGAAACAATCAAATACCTTCAACTTCAATCAGGGGCTAAAATCCAGATAACTAGAGATTTTGAAGCTGATCCACAGTCTTTGACTAGAGATGTCGAATTAATGGGCACTTCAGAACAAGTTAGCAGGGCAGAACAGCTTATCACTGAAGTAATTGCGGAGGTAAAGCACTGATTAAAATGCTATTATTGTGAACTTTTGTGTTGGAGATGTGAAGCTAATTTAGGGACCTTAATTTTACAGGCAGATTCGGGGGGTTCTGCCTCAACCACAAATCAGGCAATGAATTCAAGTCAACCTGGAGTTGAGCAGTTTGTAATGAAGATTCCTAACAATAAGGTAATTGCTTTTGTTGTGTTTTATCTACCCTTGAAGGTAAAGCTAATATTATGATAATAATTTTGTTTATAGGTTGCACTTGTCATTGGAAAGGGAGGTGAAACTATAAAGAGCATACAGAGCAAGTCACTTGCTCGTGTTCAGGTATTATTTAACTTGTGTAAACTAGAGATTACTGAACTGTTTCCAACGCAGTTATAGCAGGACGAAAACAGCCGAGTCTCTAAAATTAGCAACTGTGAAGGAATATTACTGTTCAAATTTGTTTAGTTTTGTTTGATTTGTAACCTTGACTTGTCAGAATTGTTCGACGTCACATATTCTTTTCCTTCTCTCTTCAGCTTGTGAATTTGATAGAAATTTAGTGTACTTAAAAGAAAAAAGATCTCTTTCTCATTCTGACATCTTAGTTTCCTTAACTCTGTTTGTCCCAACCCAAAAGAGTGCAGACGGGTTTGTAGTTAAAAAGAGACATCAAAATTTGTTAGTCGTCTTAGCCCTTAGGACAATATTATATGGCTCATTGCACTATTCACATTGTATTCTTAATACTAGATGTGCTTTTGCTTCTTCATGTGGAGCCCAATATGCAAGGTCATGCCGGTTATCTTAATCTGGAATGCTATTAATCATTTTACAGATTATCCCTTTGCACCTCCCTCCTGGAGATACATCGACAGAGAGAAGTGTTTATATTAATGGGCTGAAGGAGCAGATTGAGTCAGCCAAAGAATTGATTAACGAAGTAATAAGTGGGGTAAGTCATCAGTTACCTGTATTTCCTTCGCATGTTTTTGTATCAGGGAGAATGATTTCCTTTCCTAATTCCTAAAATTCTAAATAGAGCATGAGGAAATAACATCTGAACCGTCAAATTTCTTCTTTTTCTGGCTTTACTAATTTTCTGCTGAGGTTTCTGCGGTTTGTTTATCTGTTATATTATCATGTCTGATGCCTGATTGAAAATCTGGACTGTGCATGAAAATCCATAGTCTGCCTCTCTACTTTTGGTCCAATTAATTTGAAGGCAATATTTTTGTATCATTTATTTAGTACCTCTAACTAATGAATCTACTGATTTGCTTTATGTAATTTTCTTGGCAAGTGTTTTTAAACATATGGCTCGTGTTTTAGCTAACTTCAACTGCAAATCGTTTTTGTATCCCTCAATAAGAATGTTGAGATCTATTTCATTTTTGAAGAGATTGGCATACACTTTGACGAACTACTGGATTTTGAATGTTGATTATCTTTAAGACATATATTGCTCCCCTCTCTGCAGAAACGTCTGGTATCTGAAACTACTTGCTACGCCCAACTAACTTACCCTCCTACCAACAATTGGTCTCAAGCTGGACAACCTCCATTGCAGCAGCAGCAACCTCCTCAATATGGATATGCCCCAGGAACCTATCCCCCGCCTCCGGGGCCACCATATTATAGCAACTATCCAACTCAAGTAGGAAGCTGGGATCAGGCGAACCAATCGACGGTTCAGCCATCAGACCAAAGTACAGGATATAATTACTATGGCCAACAGTCTCAGGTCGGTTCAGCTCCTCCTCCCTATCATGACTATAGCTATGGTCAGCCAGCCTCAACTGGCACTCATGGTTATGATCAGAGCTACTCCCAACAGGCACCAAGTTATGGCCAAAATTTCTCAGGCCAGATTCCACCAAGTTATGATCAGCAGAACATGTACCTTAACTCAGGAGGTGCACCACCTGCTTTGCCATCAACAAATGGAACCTCTGATCCCAGTGCAGCATACCAAGTTTCCACTGGGTACTGGACTTACCCGAGCGACCCAACCCAACCGCTTCCTCAGGCAGGAAATGACCAGTCTGGGTCTTATCAAACCGCGCAACCTCCTGTGTATGGGCAGAGTGTGTACCCTCCTCCACCAGGCGTCGTGTATTCTCAGGGAGTAACCCCCTCGGCAGCTCCAGTGACGATGGCTCAAACCCAATCACAACCACCATCAGTTCACGGAGTTGAAACATCTGGAGATGGAAATTCGAACAACGGAGGGCAAAGCTTAGCTCCTACAGTGCAGGAAACTGCCAATTCAGGAAGTTGATCATAGAGTGGATCGCGTGTAGTTTATCAAAAGCTATTTTTGTTGTTCGTGCATTTTTTACAACTGATATAGATATATTTTGATACCCATTTTAGAACCTCTGTAATGAAAATTTCACTGATCATAGCGAATTTACTATCTTTTTCTATTCATATTATTGGATGCAGATATGAAAACGAAGGATCGACAAGCAGTTCAAATATTTGCTACAGAAAATTTACAACTGTAGAGCACGGGGAGTGCGTATATGGTGATAAATTATACAGAAAGCACTTTGTAAAAGGTGATCAATAAAACCCCAAACCAGAGAAAAGCTATATATATAGGAACAGATGGATTCACTGACTCGGTTCACAATTCTATTGATAAACCTCCTATCAAATGGCCTCAGGATCGCTCCAATCTTCATGGTCCAGCCAAAATCTTCATGTGTGTTTTACTCCTTTCAATCCTATTAACAATTACATTGCATACACAACTTCTCCACTGCTGTCGATATCCAGATCAAGATCAGGATCGCTCTCTTCGTCGTCTTCCATATCATCATCGATATCAAGGCTGCCAGTAAGGTATTGGTTGAGGCTCTGTGTCCCGGCTGCAGGAAGGCCAGCTTCAGCTATTATCTGCATGATTTCTTCACTGGTTTGCATTGGTTGATCAGGCTCTTCGTATTGGTTATTCATTGCCTTTTCGTCTACGAGATCGGCCGGGAGATTCTTCAGAAACCACTCATGATTCCTTATCTCCGGAATTGTAATCCTCTATACCAGGTGATTTTAGTTAATATCAAATCATATCAAAATGGAACTTTATCAACCATTTAGAAAGAAATGTGAAACAAGATTCTAGAGTCTAACCTTAGTTGGGTCGGCAACAAAAATCCTAGAGATCAGATGACGACACTCGGGAGAGATAAGAACGTAATCAGGAATTGAGTACTGTACATTCAGGATTCGCTGCAATAAACAATCAAATGTTATAGCCAAAAAAATATTGGGCTTGAAATTATAAATTCAGCAAGTGTAACCCCTATTTACCTGAA

mRNA sequence

CTCGAAAGAGAGACTTTTAGAATCCAAATTGGTTTTAAAAAGCAAAACTCAAAACGCCCTACCACCATTCGCAACAAACCCCTCCACTGCCGGCCGCGCCATTTCCCTTTTCCAACACCACACTGAATTTTGAAACCCTTTCACGCTCTCCGGATTTTCCTTCATTCCGACCGCCATGAAAGACCACGACGATGGCGAACAGCTTCACTCCGATACTAACAAGCGCAAGCTCGAAGAGAATATTCAATTGGCTAAGCAAAAAGCTCAGGAAATCGTTGCTAAGCTAGTGAGCAATGCCGAGTCCAAACGCCCTCGTTTTGAGTACGAATCCCCTGCTGTTGCCTCTACCCCACAAAACCCCCCATTATCCTCTTCGACATTTCCTGTTAGTGACAACAAGAAATTGGTTAGTTGCAATGTGTTGGATGTTTCTTCTGGTACTCCAACAGGTCCATATCATGGTTTTCAAACCACGAGTAAGAAAATAAATATTCCAAATATTAAGGTTGGGTTGATTATCGGGAAAGGTGGAGAAACAATCAAATACCTTCAACTTCAATCAGGGGCTAAAATCCAGATAACTAGAGATTTTGAAGCTGATCCACAGTCTTTGACTAGAGATGTCGAATTAATGGGCACTTCAGAACAAGTTAGCAGGGCAGAACAGCTTATCACTGAAGTAATTGCGGAGGCAGATTCGGGGGGTTCTGCCTCAACCACAAATCAGGCAATGAATTCAAGTCAACCTGGAGTTGAGCAGTTTGTAATGAAGATTCCTAACAATAAGGTTGCACTTGTCATTGGAAAGGGAGGTGAAACTATAAAGAGCATACAGAGCAAGTCACTTGCTCGTGTTCAGATTATCCCTTTGCACCTCCCTCCTGGAGATACATCGACAGAGAGAAGTGTTTATATTAATGGGCTGAAGGAGCAGATTGAGTCAGCCAAAGAATTGATTAACGAAGTAATAAGTGGGAAACGTCTGGTATCTGAAACTACTTGCTACGCCCAACTAACTTACCCTCCTACCAACAATTGGTCTCAAGCTGGACAACCTCCATTGCAGCAGCAGCAACCTCCTCAATATGGATATGCCCCAGGAACCTATCCCCCGCCTCCGGGGCCACCATATTATAGCAACTATCCAACTCAAGTAGGAAGCTGGGATCAGGCGAACCAATCGACGGTTCAGCCATCAGACCAAAGTACAGGATATAATTACTATGGCCAACAGTCTCAGGTCGGTTCAGCTCCTCCTCCCTATCATGACTATAGCTATGGTCAGCCAGCCTCAACTGGCACTCATGGTTATGATCAGAGCTACTCCCAACAGGCACCAAGTTATGGCCAAAATTTCTCAGGCCAGATTCCACCAAGTTATGATCAGCAGAACATGTACCTTAACTCAGGAGGTGCACCACCTGCTTTGCCATCAACAAATGGAACCTCTGATCCCAGTGCAGCATACCAAGTTTCCACTGGGTACTGGACTTACCCGAGCGACCCAACCCAACCGCTTCCTCAGGCAGGAAATGACCAGTCTGGGTCTTATCAAACCGCGCAACCTCCTGTGTATGGGCAGAGTGTGTACCCTCCTCCACCAGGCGTCGTGTATTCTCAGGGAGTAACCCCCTCGGCAGCTCCAGTGACGATGGCTCAAACCCAATCACAACCACCATCAGTTCACGGAGTTGAAACATCTGGAGATGGAAATTCGAACAACGGAGGGCAAAGCTTAGCTCCTACAGTGCAGGAAACTGCCAATTCAGGAAGTTGATCATAGAGTGGATCGCGTGTAGTTTATCAAAAGCTATTTTTGTTGTTCGTGCATTTTTTACAACTGATATAGATATATTTTGATACCCATTTTAGAACCTCTGTAATGAAAATTTCACTGATCATAGCGAATTTACTATCTTTTTCTATTCATATTATTGGATGCAGATATGAAAACGAAGGATCGACAAGCAGTTCAAATATTTGCTACAGAAAATTTACAACTGTAGAGCACGGGGAGTGCGTATATGGTGATAAATTATACAGAAAGCACTTTGTAAAAGGTGATCAATAAAACCCCAAACCAGAGAAAAGCTATATATATAGGAACAGATGGATTCACTGACTCGGTTCACAATTCTATTGATAAACCTCCTATCAAATGGCCTCAGGATCGCTCCAATCTTCATGGTCCAGCCAAAATCTTCATGTGTGTTTTACTCCTTTCAATCCTATTAACAATTACATTGCATACACAACTTCTCCACTGCTGTCGATATCCAGATCAAGATCAGGATCGCTCTCTTCGTCGTCTTCCATATCATCATCGATATCAAGGCTGCCAGTAAGGTATTGGTTGAGGCTCTGTGTCCCGGCTGCAGGAAGGCCAGCTTCAGCTATTATCTGCATGATTTCTTCACTGGTTTGCATTGGTTGATCAGGCTCTTCGTATTGGTTATTCATTGCCTTTTCGTCTACGAGATCGGCCGGGAGATTCTTCAGAAACCACTCATGATTCCTTATCTCCGGAATTGTAATCCTCTATACCAGGTGATTTTAGTTAATATCAAATCATATCAAAATGGAACTTTATCAACCATTTAGAAAGAAATGTGAAACAAGATTCTAGAGTCTAACCTTAGTTGGGTCGGCAACAAAAATCCTAGAGATCAGATGACGACACTCGGGAGAGATAAGAACGTAATCAGGAATTGAGTACTGTACATTCAGGATTCGCTGCAATAAACAATCAAATGTTATAGCCAAAAAAATATTGGGCTTGAAATTATAAATTCAGCAAGTGTAACCCCTATTTACCTGAA

Coding sequence (CDS)

ATGAAAGACCACGACGATGGCGAACAGCTTCACTCCGATACTAACAAGCGCAAGCTCGAAGAGAATATTCAATTGGCTAAGCAAAAAGCTCAGGAAATCGTTGCTAAGCTAGTGAGCAATGCCGAGTCCAAACGCCCTCGTTTTGAGTACGAATCCCCTGCTGTTGCCTCTACCCCACAAAACCCCCCATTATCCTCTTCGACATTTCCTGTTAGTGACAACAAGAAATTGGTTAGTTGCAATGTGTTGGATGTTTCTTCTGGTACTCCAACAGGTCCATATCATGGTTTTCAAACCACGAGTAAGAAAATAAATATTCCAAATATTAAGGTTGGGTTGATTATCGGGAAAGGTGGAGAAACAATCAAATACCTTCAACTTCAATCAGGGGCTAAAATCCAGATAACTAGAGATTTTGAAGCTGATCCACAGTCTTTGACTAGAGATGTCGAATTAATGGGCACTTCAGAACAAGTTAGCAGGGCAGAACAGCTTATCACTGAAGTAATTGCGGAGGCAGATTCGGGGGGTTCTGCCTCAACCACAAATCAGGCAATGAATTCAAGTCAACCTGGAGTTGAGCAGTTTGTAATGAAGATTCCTAACAATAAGGTTGCACTTGTCATTGGAAAGGGAGGTGAAACTATAAAGAGCATACAGAGCAAGTCACTTGCTCGTGTTCAGATTATCCCTTTGCACCTCCCTCCTGGAGATACATCGACAGAGAGAAGTGTTTATATTAATGGGCTGAAGGAGCAGATTGAGTCAGCCAAAGAATTGATTAACGAAGTAATAAGTGGGAAACGTCTGGTATCTGAAACTACTTGCTACGCCCAACTAACTTACCCTCCTACCAACAATTGGTCTCAAGCTGGACAACCTCCATTGCAGCAGCAGCAACCTCCTCAATATGGATATGCCCCAGGAACCTATCCCCCGCCTCCGGGGCCACCATATTATAGCAACTATCCAACTCAAGTAGGAAGCTGGGATCAGGCGAACCAATCGACGGTTCAGCCATCAGACCAAAGTACAGGATATAATTACTATGGCCAACAGTCTCAGGTCGGTTCAGCTCCTCCTCCCTATCATGACTATAGCTATGGTCAGCCAGCCTCAACTGGCACTCATGGTTATGATCAGAGCTACTCCCAACAGGCACCAAGTTATGGCCAAAATTTCTCAGGCCAGATTCCACCAAGTTATGATCAGCAGAACATGTACCTTAACTCAGGAGGTGCACCACCTGCTTTGCCATCAACAAATGGAACCTCTGATCCCAGTGCAGCATACCAAGTTTCCACTGGGTACTGGACTTACCCGAGCGACCCAACCCAACCGCTTCCTCAGGCAGGAAATGACCAGTCTGGGTCTTATCAAACCGCGCAACCTCCTGTGTATGGGCAGAGTGTGTACCCTCCTCCACCAGGCGTCGTGTATTCTCAGGGAGTAACCCCCTCGGCAGCTCCAGTGACGATGGCTCAAACCCAATCACAACCACCATCAGTTCACGGAGTTGAAACATCTGGAGATGGAAATTCGAACAACGGAGGGCAAAGCTTAGCTCCTACAGTGCAGGAAACTGCCAATTCAGGAAGTTGA

Protein sequence

MKDHDDGEQLHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLVSETTCYAQLTYPPTNNWSQAGQPPLQQQQPPQYGYAPGTYPPPPGPPYYSNYPTQVGSWDQANQSTVQPSDQSTGYNYYGQQSQVGSAPPPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALPSTNGTSDPSAAYQVSTGYWTYPSDPTQPLPQAGNDQSGSYQTAQPPVYGQSVYPPPPGVVYSQGVTPSAAPVTMAQTQSQPPSVHGVETSGDGNSNNGGQSLAPTVQETANSGS

Homology

[Close]

BLAST of Lsi11G010310 vs. Swiss-Prot
Match: FUBP2_MOUSE (Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-18
Identity = 79/242 (32.64%), Postives = 125/242 (51.65%), Query Frame = 1


Query: 26  AKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPVSDNKKLVSCNVLDV 85
           A Q+A++I AK+  +A +        +P      Q   L     P  D+KKL S      
Sbjct: 78  AVQRARQIAAKIGGDAATT---VNNNTPDFGFGGQKRQLEDGDQP--DSKKLASQGD--- 137

Query: 86  SSGTPTGPYHGFQTTS--KKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADP 145
           S G+  GP H    TS  ++  +P+  VGLIIG+GGE I  +Q  SG K+QI+ D    P
Sbjct: 138 SIGSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP 197

Query: 146 QSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQPGVEQFVMKIPNN 205
           +   R V L G  E V +A+ ++ ++++    GG     +   N  Q G  Q +M IP  
Sbjct: 198 E---RSVSLTGAPESVQKAKMMLDDIVSRG-RGGPPGQFHDNANGGQNGTVQEIM-IPAG 257

Query: 206 KVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINE 265
           K  LVIGKGGETIK +Q +  A V++I +     +T+ ++ + I G   +++ A E++ +
Sbjct: 258 KAGLVIGKGGETIKQLQER--AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 304

[Close]

BLAST of Lsi11G010310 vs. Swiss-Prot
Match: FUBP2_RAT (Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-18
Identity = 79/242 (32.64%), Postives = 125/242 (51.65%), Query Frame = 1


Query: 26  AKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPVSDNKKLVSCNVLDV 85
           A Q+A++I AK+  +A +        +P      Q   L     P  D+KKL S      
Sbjct: 78  AVQRARQIAAKIGGDAATT---VNNNTPDFGFGGQKRQLEDGDQP--DSKKLASQGD--- 137

Query: 86  SSGTPTGPYHGFQTTS--KKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADP 145
           S G+  GP H    TS  ++  +P+  VGLIIG+GGE I  +Q  SG K+QI+ D    P
Sbjct: 138 SIGSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP 197

Query: 146 QSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQPGVEQFVMKIPNN 205
           +   R V L G  E V +A+ ++ ++++    GG     +   N  Q G  Q +M IP  
Sbjct: 198 E---RSVSLTGAPESVQKAKMMLDDIVSRG-RGGPPGQFHDNANGGQNGTVQEIM-IPAG 257

Query: 206 KVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINE 265
           K  LVIGKGGETIK +Q +  A V++I +     +T+ ++ + I G   +++ A E++ +
Sbjct: 258 KAGLVIGKGGETIKQLQER--AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 304

[Close]

BLAST of Lsi11G010310 vs. Swiss-Prot
Match: FUBP3_HUMAN (Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-17
Identity = 98/338 (28.99%), Postives = 148/338 (43.79%), Query Frame = 1


Query: 101 SKKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVS 160
           S ++++P   VG++IG+ GE IK +Q  +G +IQ   D    P+   R  ++MG  ++  
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPE---RAAQVMGPPDRCQ 314

Query: 161 RAEQLITEVIAEADS----GGSASTTNQAMN------SSQPGVEQFVMKIPNNKVALVIG 220
            A  +I+E+I  A      GG A+   +          +  GV++    +P +K  LVIG
Sbjct: 315 HAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIG 374

Query: 221 KGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINEVISGKRL 280
           KGGE IKSI  +S A V+ +  + PP      R   I G+ +QIE A++LI+E + G  L
Sbjct: 375 KGGENIKSINQQSGAHVE-LQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVGGTNL 434

Query: 281 VSETTCYAQLTYPPTNNWSQAGQPPLQQQQPPQYGYAPGTYP-------------PPPGP 340
                 + Q      + +SQ   PP Q   PP+   + G +P             P  GP
Sbjct: 435 -GAPGAFGQ------SPFSQPPAPPHQNTFPPR---SSGCFPNMAAKVNGNPHSTPVSGP 494

Query: 341 PYY------SNY-----PTQVGSWDQANQSTVQPSDQSTGYNYYGQQSQVGSAPPPYHDY 400
           P +      S Y     PTQ     Q+   + QP+      +YY +QS   SA P     
Sbjct: 495 PAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQSHAASAAP----- 554

Query: 401 SYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQ 405
                    T  + + Y QQ   YGQ        S +Q
Sbjct: 555 -QASSPPDYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ 572

[Close]

BLAST of Lsi11G010310 vs. Swiss-Prot
Match: FUBP2_HUMAN (Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-17
Identity = 77/242 (31.82%), Postives = 124/242 (51.24%), Query Frame = 1


Query: 26  AKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPVSDNKKLVSCNVLDV 85
           A Q+A++I AK+  +A +        +P      Q   L     P  ++KKL S      
Sbjct: 77  AVQRARQIAAKIGGDAATT---VNNSTPDFGFGGQKRQLEDGDQP--ESKKLASQGD--- 136

Query: 86  SSGTPTGPYHGFQTTS--KKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADP 145
           S  +  GP H    TS  ++  +P+  VGLIIG+GGE I  +Q  SG K+QI+ D    P
Sbjct: 137 SISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP 196

Query: 146 QSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQPGVEQFVMKIPNN 205
           +   R V L G  E V +A+ ++ ++++    GG     +   N  Q G  Q +M IP  
Sbjct: 197 E---RSVSLTGAPESVQKAKMMLDDIVSRG-RGGPPGQFHDNANGGQNGTVQEIM-IPAG 256

Query: 206 KVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINE 265
           K  LVIGKGGETIK +Q +  A V++I +     +T+ ++ + I G   +++ A E++ +
Sbjct: 257 KAGLVIGKGGETIKQLQER--AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 303

[Close]

BLAST of Lsi11G010310 vs. Swiss-Prot
Match: FUBP1_HUMAN (Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-17
Identity = 80/243 (32.92%), Postives = 124/243 (51.03%), Query Frame = 1


Query: 26  AKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPVSDNKKLVSCNVLDV 85
           A Q+A++I AK+  +A +     +Y         Q  PL     P  D KK+   N    
Sbjct: 34  ALQRARQIAAKIGGDAGTSLNSNDYGYGG-----QKRPLEDGDQP--DAKKVAPQND--- 93

Query: 86  SSGTPTGPYHGFQTTS---KKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEAD 145
           S GT   P H  Q+ S   ++  +P+  VG IIG+GGE I  +Q +SG KIQI  D    
Sbjct: 94  SFGTQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGL 153

Query: 146 PQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQPGVEQFVMKIPN 205
           P+   R   L GT E V  A++L+ +++   + G  A   +   +   PG     + IP 
Sbjct: 154 PE---RSCMLTGTPESVQSAKRLLDQIV---EKGRPAPGFH---HGDGPGNAVQEIMIPA 213

Query: 206 NKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELIN 265
           +K  LVIGKGGETIK +Q +  A V+++ +   P +T  ++ + I G   +++ AKE++ 
Sbjct: 214 SKAGLVIGKGGETIKQLQER--AGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 255

[Close]

BLAST of Lsi11G010310 vs. TrEMBL
Match: A0A0A0K828_CUCSA (RNA-binding protein Nova-1 OS=Cucumis sativus GN=Csa_7G074890 PE=4 SV=1)

HSP 1 Score: 812.0 bits (2096), Expect = 4.3e-232
Identity = 453/542 (83.58%), Postives = 466/542 (85.98%), Query Frame = 1


Query: 1   MKDHDDGEQLHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQ 60
           MKDHDD ++LHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYE PA A  PQ
Sbjct: 1   MKDHDDADELHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYEPPAPAPPPQ 60

Query: 61  NPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGE 120
           NPPLSSSTF VS              SGT  GPYHGFQTTSKKINIPNIKVGLIIGKGGE
Sbjct: 61  NPPLSSSTFTVS--------------SGTQAGPYHGFQTTSKKINIPNIKVGLIIGKGGE 120

Query: 121 TIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSAS 180
           TIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLI EVIAEADSGGSAS
Sbjct: 121 TIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLINEVIAEADSGGSAS 180

Query: 181 TTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTS 240
           TTNQA+NSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKS ARVQIIPLHLPPGDTS
Sbjct: 181 TTNQAINSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSAARVQIIPLHLPPGDTS 240

Query: 241 TERSVYINGLKEQIESAKELINEVISGKRLVSETTCYAQLTYPPTNNWSQAGQPPLQQQQ 300
           TERSVYINGLKEQIESAKELINEVISGKRLVSETT YAQ TYP TNNWSQAGQ P  QQQ
Sbjct: 241 TERSVYINGLKEQIESAKELINEVISGKRLVSETTSYAQPTYPSTNNWSQAGQQPPLQQQ 300

Query: 301 PPQYGYAPGTYPPPPGPPYYSNYPTQVGSWDQANQSTVQPSDQSTGYNYYGQQSQVGSAP 360
            PQYGYA GTYPPP GPPYYS YP QV SWDQ+NQSTVQPSDQSTGYNYYGQQSQVGSAP
Sbjct: 301 QPQYGYAAGTYPPPQGPPYYSTYPAQVASWDQSNQSTVQPSDQSTGYNYYGQQSQVGSAP 360

Query: 361 PPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALPS 420
           P +HDYSYGQPAS+GTHGYDQSYSQQAPSY     GQIPPSYDQQNMYLNSG AP ALPS
Sbjct: 361 PQFHDYSYGQPASSGTHGYDQSYSQQAPSY-----GQIPPSYDQQNMYLNSGSAPSALPS 420

Query: 421 TNGTSD---PSAAYQVSTGYWTY-PSDPTQPLPQAGNDQSGSYQT-----AQPPVYGQSV 480
           +NGTS+   P+AAYQ STGYWTY  +D TQ LPQ GNDQSGSYQT     AQPPVYGQSV
Sbjct: 421 SNGTSEGTYPTAAYQASTGYWTYQTTDQTQSLPQTGNDQSGSYQTVSGGHAQPPVYGQSV 480

Query: 481 YPPPPGVVYSQGVTPSAAPVTMAQTQSQPPSVHGVETSGDGNSNNGGQSLAPTVQETANS 534
           YPPPPG VYS    P   P  +A TQSQPPS   VETS DGNSN+ GQ+LAPTVQE ANS
Sbjct: 481 YPPPPG-VYSAPAPP--PPEMVAPTQSQPPS---VETSEDGNSNS-GQNLAPTVQENANS 516

[Close]

BLAST of Lsi11G010310 vs. TrEMBL
Match: M5W6H0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002757mg PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 2.8e-122
Identity = 290/521 (55.66%), Postives = 339/521 (65.07%), Query Frame = 1


Query: 1   MKDHDDGEQ---LHSDTNKRKLEEN---IQLAKQKAQEIVAKLVSNAESKRPRFEYESPA 60
           MK+  D  Q      D+ KRKLE++   I+LAKQKAQEI A+LVS+AESKRPR E E P 
Sbjct: 1   MKEDQDQHQEATATGDSAKRKLEDSSFSIELAKQKAQEIAARLVSDAESKRPRLE-EEPF 60

Query: 61  VASTPQNPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLI 120
             S   NPP     +PVS   +              +G  +G   TSKKI IPN KVG+I
Sbjct: 61  QPSPVFNPP----PYPVSFTAQ--------------SGQSYGSPGTSKKITIPNGKVGVI 120

Query: 121 IGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEAD 180
           IGKGGETIK LQLQSGAKIQITRD EAD  SLTRDV+L GT EQ+SRAEQLI++VIAEAD
Sbjct: 121 IGKGGETIKQLQLQSGAKIQITRDSEADLSSLTRDVDLTGTFEQISRAEQLISDVIAEAD 180

Query: 181 SGGSAS-TTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLH 240
           +GGSA  +TNQ  NS QPG EQFVMK+PNNKVAL+IGKGGETI+++QSKS AR+Q++PLH
Sbjct: 181 AGGSAPPSTNQGFNSIQPGTEQFVMKVPNNKVALIIGKGGETIRNMQSKSGARIQVVPLH 240

Query: 241 LPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLV--SETTCYAQLTYPPTNNWSQA 300
           LPPGD S ERSVYING+ EQIE+AKEL+NEVISGKRLV  S T  Y Q +Y P  NW+  
Sbjct: 241 LPPGDMSAERSVYINGVTEQIEAAKELVNEVISGKRLVNTSGTNSYMQQSYAPPGNWAPP 300

Query: 301 GQPPLQQQQPPQYGYA-PGTYPPPPGPPYYSNYPTQVGSWDQANQ-STVQPSDQSTGYNY 360
           GQ P+QQQQ P YGY  PG+Y PP    YY NYPTQ   WDQ+NQ  + QP  +S+ YNY
Sbjct: 301 GQAPIQQQQ-PHYGYTQPGSYAPPAS--YYGNYPTQGAGWDQSNQVPSSQPPQESSAYNY 360

Query: 361 YGQQSQVGSAPPPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYL 420
           YGQQ  +GSA PP   Y+Y Q     +HGYDQ Y+QQ PSYGQN S Q P S DQQ  Y 
Sbjct: 361 YGQQPPMGSA-PPNPSYNYNQTPPVASHGYDQGYAQQPPSYGQNISSQAPGS-DQQQQYA 420

Query: 421 NSGGAPPALPS------TNGTSDPSAAYQV---------STGYWTYPSDPTQPLPQAGND 480
            SG  PPA+PS      ++ ++ PSAAY V           GYW       QP  Q G  
Sbjct: 421 TSGYGPPAVPSSVDGSASSQSTQPSAAYPVPYSQPPANSQAGYW-------QPHTQTGYY 480

Query: 481 QS--GSYQTAQPP-------VYGQSVYPPPPGVVYSQGVTP 487
           Q+  G  Q  + P       VYGQ  YP P    Y + V P
Sbjct: 481 QTSYGGQQAVEDPSAASQSAVYGQGGYPQPDPSHYGEAVNP 490

[Close]

BLAST of Lsi11G010310 vs. TrEMBL
Match: W9RBH1_9ROSA (Far upstream element-binding protein 2 OS=Morus notabilis GN=L484_026897 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 5.3e-113
Identity = 292/567 (51.50%), Postives = 354/567 (62.43%), Query Frame = 1


Query: 5   DDGEQLHSDTN-----KRKLEENIQLAKQKAQEIVAKLVSNAESKRPRF-EYESPAVAST 64
           ++ EQ  S+T      KRKLE+NI  AKQKAQEI A+LVSNAESKRPR  + +SP     
Sbjct: 12  EEEEQARSETTTDTTTKRKLEDNILFAKQKAQEIAARLVSNAESKRPRLADDDSP----- 71

Query: 65  PQNPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKG 124
              P   S++          + N L VS    TG       TSK+I+IPN KVGLIIGKG
Sbjct: 72  --EPAFHSNS----------ASNPLTVSFVAQTGQ------TSKRISIPNGKVGLIIGKG 131

Query: 125 GETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGS 184
           GETIKYLQ QSGAKIQIT+D EADP SLTR+VEL GTSEQ+SRAEQLI +VIA+ ++GGS
Sbjct: 132 GETIKYLQNQSGAKIQITKDLEADPYSLTREVELTGTSEQISRAEQLINDVIAQTEAGGS 191

Query: 185 ASTTNQAMNSS-------QPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIP 244
           A +  Q   S+       QPG EQFVMK+PNNKVAL+IGKGGETI+++QS+S AR+QI+P
Sbjct: 192 APSAKQDAPSAKQDANPVQPGAEQFVMKVPNNKVALLIGKGGETIRNMQSRSGARMQIVP 251

Query: 245 LHLPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLV--SETTCYAQLTYPPTNNWS 304
           LHLPPGDTSTER+VYI+GLKEQIESAKELINEV+SGKRLV  S    Y Q  Y    NW 
Sbjct: 252 LHLPPGDTSTERTVYIDGLKEQIESAKELINEVLSGKRLVNPSGANSYMQPAYAGAANWG 311

Query: 305 QAGQPPLQQQQPPQYGYA-PGTY-PPPPGPPYYSNYPTQVGSWDQANQST-VQPSDQSTG 364
             GQPP+QQQ  PQYGY  PG+Y  PPP   YYSN+PT V +WD ++Q+T  Q   QSTG
Sbjct: 312 APGQPPMQQQ--PQYGYTQPGSYGQPPPPASYYSNHPTSVAAWDPSHQATHSQQPQQSTG 371

Query: 365 YNYYGQQSQVGSAPP-PYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQ 424
           Y+YYGQQ+QVG AP  P + Y+   PAS   H Y QSYSQQ  +YGQ  S Q+P   +Q 
Sbjct: 372 YDYYGQQTQVGLAPSNPSYSYNQTLPAS---HSYGQSYSQQPSNYGQPISSQVPVP-NQP 431

Query: 425 NMYLNSG-GAPPALPSTNGTS-----DPSAAYQVS---------TGYWTYPSDPTQPLPQ 484
           N Y++S  GAPP   + +GTS      P++AY  +          GYW Y S  +QP  Q
Sbjct: 432 NPYVSSEYGAPPPSSNLDGTSSSQAMQPASAYPYAHSQTIDNSHAGYWAYSSSTSQPPAQ 491

Query: 485 AGNDQSGSYQT------AQPPV------YGQSVYPPPPGVV---YSQGVTPSAAPVTMAQ 523
              DQ+G YQT      AQ P       YG+  YP         Y Q   P+     + Q
Sbjct: 492 PFYDQTGYYQTMYGSQQAQVPSAVPHSGYGEDGYPSQSASAPTDYDQATNPAQGGQQLEQ 545

[Close]

BLAST of Lsi11G010310 vs. TrEMBL
Match: B9S767_RICCO (RNA-binding protein Nova-1, putative OS=Ricinus communis GN=RCOM_0774000 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.8e-106
Identity = 271/568 (47.71%), Postives = 346/568 (60.92%), Query Frame = 1


Query: 1   MKDHDDGEQLHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQ 60
           M + +  E   +D  KRKL+   +LAKQ+AQEI +++ ++A+ KRPR   +S     +P 
Sbjct: 1   MGEPEQQELGSNDGGKRKLDV-FELAKQRAQEIASRIANDADLKRPRLVSDS-----SPD 60

Query: 61  NPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGE 120
            P L S++ P   +          VS  +    YHG Q TSK+I IP+ KVG++IGKGGE
Sbjct: 61  PPSLYSNSIPAPPS--------YTVSYASQQSQYHGSQGTSKRITIPSGKVGVVIGKGGE 120

Query: 121 TIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSAS 180
           TIK +QLQSGAKIQIT+D +ADP SLTRDVELMGTSEQ+SRAE+LI +VIAE D+GGSAS
Sbjct: 121 TIKNIQLQSGAKIQITKDQDADPHSLTRDVELMGTSEQISRAEELINDVIAETDAGGSAS 180

Query: 181 TTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTS 240
           +    +N+ QPG EQF +++PN+KV L+IGKGGETIK +QS+S AR+QIIPLHLPPGD +
Sbjct: 181 SAVHGLNTKQPGAEQFSIRVPNDKVGLLIGKGGETIKYMQSRSGARMQIIPLHLPPGDPT 240

Query: 241 TERSVYINGLKEQIESAKELINEVISGKRLVSET--TCYAQLTYPPTNNWSQAGQPPLQQ 300
           TER+VYINGL EQIE+AKEL+N+V++GKR++  T  + Y Q TYP T NW+Q GQ P+QQ
Sbjct: 241 TERTVYINGLTEQIEAAKELVNDVLNGKRIIDPTGSSSYGQPTYPATGNWAQPGQTPMQQ 300

Query: 301 QQPPQYGYA-PGTYPPPPGPPYYSNYPTQVGSWDQANQSTVQPSDQSTGYNYYGQQSQVG 360
              PQYGYA PG  P PP   YY NY TQ  +WDQ+N +T+  + Q  GY YYGQQ Q+G
Sbjct: 301 ---PQYGYAQPGNQPTPPA--YYGNY-TQQPAWDQSNPTTMSQTQQMAGYGYYGQQPQMG 360

Query: 361 SAPPPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPA 420
           SAP    + SY Q     + GY  SYSQQ  +YGQN S Q  P+ +QQ  Y  S     A
Sbjct: 361 SAP---LNSSYNQTPPVASSGYGNSYSQQTSNYGQNISSQ-TPTLEQQRPYATSNYGSAA 420

Query: 421 LPSTNGTSDPSAAYQVS-----TGYWTYPSDPT----------QPLPQAGNDQSGSYQTA 480
           + S +  +  S + Q +       Y    +DP           QP PQ G DQ+G  Q  
Sbjct: 421 VSSQSDGAISSQSTQAAPAYPPPAYNQQVADPQTYWTAAGYAGQPPPQTGYDQTGYSQAG 480

Query: 481 QPPV-------YGQSVY---PPPPGVVYSQGVTP--SAAPVTMAQTQSQPPS-------V 532
                      YGQ  Y   P P    Y+QG  P     P   AQ QSQP +        
Sbjct: 481 YGVSLSSNQPVYGQGGYPLQPSPAAANYAQGTNPLGYGQPQLEAQPQSQPSNNGHSQSLA 540

[Close]

BLAST of Lsi11G010310 vs. TrEMBL
Match: A0A067KTI0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04886 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.6e-96
Identity = 256/539 (47.50%), Postives = 323/539 (59.93%), Query Frame = 1


Query: 12  SDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPV 71
           +D  KRKL+   +LAKQ+AQEI +++ ++A+ KRPR       V+     P L S++  V
Sbjct: 14  TDGGKRKLDA-FELAKQRAQEIASRIANDADQKRPRL------VSDNSSEPSLISNSVSV 73

Query: 72  SDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGETIKYLQLQSGA 131
           S +          V        YHG Q  SKKI IPN KVG++IG+GGETIKY+Q+QSGA
Sbjct: 74  SSS--------FSVPFSAQPSLYHGSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGA 133

Query: 132 KIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQP 191
           KIQIT+D +ADP SLTRDVELMG+S+Q+SRAE+LI +VIAE D+GGSAS+    +++ Q 
Sbjct: 134 KIQITKDQDADPHSLTRDVELMGSSDQISRAEELINDVIAETDAGGSASSAVHGLDTKQT 193

Query: 192 GVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLK 251
           G EQF MK+PN+KV L+IGK G+TIK +Q++S AR+QIIPLHLPPGD STER++YING  
Sbjct: 194 GGEQFAMKVPNDKVGLLIGKSGDTIKYMQNRSGARMQIIPLHLPPGDPSTERTLYINGST 253

Query: 252 EQIESAKELINEVISGKRLVSETTCYAQLTYP----PTNNWSQAGQPPLQQQQPPQYGYA 311
           EQIE+AKEL+N+VI+GKR+++++      +YP    P +NW+Q GQP +QQQ  P YGYA
Sbjct: 254 EQIEAAKELVNDVINGKRIINQS---GSSSYPLPVNPPSNWAQPGQPVMQQQ--PHYGYA 313

Query: 312 -PGTYPPPPGPPYYSNYPTQVGSWDQANQSTV-QPSDQSTGYNYYGQQSQVGSAPPPYHD 371
            P T P P    YY NY  Q  SWDQ+N STV Q   Q TGY YYGQ  Q+GSAP     
Sbjct: 314 QPATQPMPSS--YYGNY-AQQQSWDQSNPSTVSQMPQQMTGYGYYGQPPQMGSAP----S 373

Query: 372 YSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALPSTNGTS 431
           Y+Y Q     ++ YD SYSQQAPSYG       P             GA P+  +    +
Sbjct: 374 YNYNQKTHVTSNTYDHSYSQQAPSYGSAAVSSQP------------DGAIPSQSTQAAPA 433

Query: 432 DPSAAYQVSTGYWTYPSDPTQPLPQAGNDQSGSYQTA----QP---------PVYGQSVY 491
            P    Q  T   TY    TQ  PQ G DQ+G  Q A    QP         PVYG   Y
Sbjct: 434 YPPPYNQPVTNPQTY---WTQQPPQTGYDQTGYSQIAYGGLQPVQFMPSSTQPVYGPGGY 493

Query: 492 P--PPPGVVYS-QGVTPSAAPVTMAQT--QSQPPS-------VHGVETSGDGNSNNGGQ 520
           P  P P    S QG  P        +T  QSQ P+        +G ET  DGNSN+  Q
Sbjct: 494 PLEPSPATANSVQGTHPLTYGQAQVETQPQSQQPNNGHSQSLAYGAETQ-DGNSNSAVQ 509

[Close]

BLAST of Lsi11G010310 vs. TAIR10
Match: AT2G25970.1 (AT2G25970.1 KH domain-containing protein)

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-76
Identity = 226/544 (41.54%), Postives = 298/544 (54.78%), Query Frame = 1


Query: 21  ENIQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPVSDNKKLVSC 80
           + IQ+AKQKAQEI A+L+++A++KRPR +      AS         S++P S+ K++   
Sbjct: 65  DEIQIAKQKAQEIAARLLNSADAKRPRVDNG----ASYDYGDNKGFSSYP-SEGKQMSGT 124

Query: 81  NVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFE 140
               V S  P   Y  FQ T+KKI+IPN++VG+IIGKGGETIKYLQLQSGAKIQ+TRD +
Sbjct: 125 ----VPSSIPVS-YGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMD 184

Query: 141 ADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQA--MNSSQPGVEQFVM 200
           ADP   TR V+L GT +Q+S+AEQLIT+V+ EA++G +A +          Q G +QFVM
Sbjct: 185 ADPNCATRTVDLTGTPDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVM 244

Query: 201 KIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAK 260
           KIPNNKV L+IGKGGETIKS+Q+K+ AR+Q+IPLHLPPGD + ER++ I+G+ EQIE AK
Sbjct: 245 KIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIEHAK 304

Query: 261 ELINEVISGKRLVSETTC---YAQ---LTYPPTNNWSQAGQPPLQQQQPPQYG--YAPGT 320
           +L+NE+ISG+  +  +     Y Q       P ++W+  G PP Q    P YG    PG 
Sbjct: 305 QLVNEIISGENRMRNSAMGGGYPQQGGYQARPPSSWAPPGGPPAQ----PGYGGYMQPGA 364

Query: 321 YPPPP--GPPYYSNYPTQVGSWDQANQSTVQPSDQST--GYNYYGQQ-----SQVGSAPP 380
           YP PP  G   Y +YP Q  S    +QS+V PS QS    Y+YYGQQ     S  GS+ P
Sbjct: 365 YPGPPQYGQSPYGSYPQQT-SAGYYDQSSVPPSQQSAQGEYDYYGQQQSQQPSSGGSSAP 424

Query: 381 P-----YHDYSYGQPASTGTHGYDQS-----YSQQAPSYGQNFSGQIPPSYDQQNMYLNS 440
           P     Y+ Y +         GY Q       + Q   YGQ         YDQQ  Y  S
Sbjct: 425 PTDTTGYNYYQHASGYGQAGQGYQQDGYGAYNASQQSGYGQ------AAGYDQQGGY-GS 484

Query: 441 GGAPPALPSTNGTSDPSAAYQVSTGYWTYPSDPTQPLPQAGNDQSGSYQTAQPPVYGQSV 500
              P      +  + PS+A     GY T    P    P  G+     Y    PP   Q+ 
Sbjct: 485 TTNPSQEEDASQAAPPSSAQSGQAGYGTTGQQP----PAQGSTGQAGY--GAPPT-SQAG 544

Query: 501 YPPPPGVVYSQGV---TPSAAPVTMAQTQSQP--PSVHGVET-------SGDGNSNNGGQ 524
           Y   P   Y+ G     P++ P T  Q+Q  P  P  +G ++       SG G     G 
Sbjct: 545 YSSQPAAAYNSGYGAPPPASKPPTYGQSQQSPGAPGSYGSQSGYAQPAASGYGQPPAYGY 579

[Close]

BLAST of Lsi11G010310 vs. TAIR10
Match: AT4G10070.1 (AT4G10070.1 KH domain-containing protein)

HSP 1 Score: 169.1 bits (427), Expect = 7.4e-42
Identity = 169/457 (36.98%), Postives = 221/457 (48.36%), Query Frame = 1


Query: 96  GFQTTSKKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGT 155
           G Q+T+++I++P+ KVG++IGKGGETI+YLQ  SGAKIQI RD EADP S  R VE++G+
Sbjct: 172 GTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGS 231

Query: 156 SEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQP-GV-EQFVMKIPNNKVALVIGKGG 215
              +  AE+LI+ VIAEA++GGS +   +   S+   G+ EQ  +K+PN+KV L+IG+GG
Sbjct: 232 VACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGG 291

Query: 216 ETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINEVIS-GKRLVS 275
           ETIK++Q++S AR Q+IP H   GD   ER+V I+G K QI+ A ++I +V++   R  S
Sbjct: 292 ETIKNMQTRSGARTQLIPQH-AEGDGLKERTVRISGDKMQIDIATDMIKDVMNQNARPSS 351

Query: 276 ETTCYAQLTYPPTNNWSQAGQPPLQQQQPPQYGYAPGTYPPPPGPPYYS--NYPTQVGSW 335
            +  Y Q  Y P       G PP    + P   +AP  Y   P  PY S  +Y    G  
Sbjct: 352 YSGGYNQPAYRPQG----PGGPPQWGSRGP---HAPHPYDYHPRGPYSSQGSYYNSPGFG 411

Query: 336 DQANQSTV----------QPSDQSTGYNYYGQQ--SQVGSAPPPYHDYSY----GQPAST 395
               Q             Q    S  YNYYG+Q     G  PPP          G P S 
Sbjct: 412 GYPPQHMPPRGGYGTDWDQRPPYSGPYNYYGRQGAQSAGPVPPPSGPVPSPAFGGPPLSQ 471

Query: 396 GTHGYDQS----YSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALPSTNGTSDPSAA 455
            ++GY QS    Y   AP     +      +Y+Q     N    PP  P   G+      
Sbjct: 472 VSYGYGQSHGPEYGHAAPYSQTGYQQTYGQTYEQPKYDSN----PPMQPPYGGS------ 531

Query: 456 YQVSTGYWTYPSDPTQPLPQAGNDQSGSYQTAQPPV--YG-------QSVYPPPP----- 513
                             P AG  QSG YQ  QP V  YG       Q   PP P     
Sbjct: 532 -----------------YPPAGGGQSGYYQMQQPGVRPYGMQQGPVQQGYGPPQPAAAAS 591

[Close]

BLAST of Lsi11G010310 vs. TAIR10
Match: AT1G33680.1 (AT1G33680.1 KH domain-containing protein)

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-38
Identity = 152/467 (32.55%), Postives = 219/467 (46.90%), Query Frame = 1


Query: 84  DVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADP 143
           +V+ G+        Q+T+++I++P+ KVG +IGKGGE ++YLQ+ SGAKIQI RD EADP
Sbjct: 216 EVNGGSTHKEVDDTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADP 275

Query: 144 QSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQPGVEQFVMKIPNN 203
            S  R VE++GT   + +AE+LI  VIAE ++GG  +   + +       EQ  +K+P++
Sbjct: 276 SSALRPVEIIGTVSCIEKAEKLINAVIAEVEAGGVPALAARGV------PEQMEIKVPSD 335

Query: 204 KVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINE 263
           KV ++IG+GGETIK++Q+KS AR+Q+IP +   GD S ER+V I+G K QI+ A  LI +
Sbjct: 336 KVGVIIGRGGETIKNMQTKSRARIQLIPQN--EGDASKERTVRISGDKRQIDIATALIKD 395

Query: 264 VISGKRLVSETTCYAQLTYPPTNNWSQAGQPPLQQQQPPQYGYAPGTYPPPPGPPYYSN- 323
           V+      S          P +  ++Q    P     PPQ+G + G + P   P  Y + 
Sbjct: 396 VMYQDGRPS----------PYSGGFNQQAYQPRGPGGPPQWG-SRGPHGPHSMPYNYHHG 455

Query: 324 --YPTQVGSWDQANQSTVQPS----------------DQSTGYNYYGQQSQVGSAPPPYH 383
             YP+Q   +   N     P                   S  Y+YYG+Q      P P H
Sbjct: 456 GPYPSQGSHFRPPNSGGYPPQHMPPRSGYGSGWEQRPPHSGPYDYYGRQGGQNPGPVPSH 515

Query: 384 DYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALPSTNGT 443
             SY Q  +  T+G  Q Y Q  P Y        PP +     Y   GG+    PS  G 
Sbjct: 516 GASYSQAGAQQTYG--QMYDQ--PHYDN------PPMHQSYGGY---GGSQQGYPSAGGQ 575

Query: 444 SDPSAAYQVSTGYWTYPSDPTQPLPQAGNDQS--GSYQTAQPPVYGQSVYPPPPGVVYSQ 503
                              P++P    G+ +   G  + A PP  G   Y  P     S 
Sbjct: 576 HQ--------------MQQPSRPYGMQGSAEQGYGPPRPAAPP--GDVPYQGPTPAAPSY 634

Query: 504 GVTPSAA---PVTMAQTQSQPPSVHGVETSGDGNSNNGGQSLAPTVQ 527
           G TP+AA       A +    P+     ++       G  S APT Q
Sbjct: 636 GSTPAAASYGSTPAAPSYGSTPAAPSYGSNMAQQQQYGYASSAPTQQ 634

[Close]

BLAST of Lsi11G010310 vs. TAIR10
Match: AT5G04430.2 (AT5G04430.2 binding to TOMV RNA 1L (long form))

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-07
Identity = 69/256 (26.95%), Postives = 111/256 (43.36%), Query Frame = 1


Query: 106 IPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQL 165
           + N   G +IGKGG TI   Q +SGA+IQ++R+ E  P +  R + + G+ ++V    +L
Sbjct: 41  VSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLEL 100

Query: 166 ITEVI---AEADSGGSASTTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSK 225
           I + +     A+ G          N  +P   +  + +PN+    +IGKGG TIKS   +
Sbjct: 101 ILDKLHSELHAEDG----------NEVEPR-RRIRLVVPNSSCGGIIGKGGATIKSFIEE 160

Query: 226 SLARVQIIPLHLPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLVSETTCYAQLTY 285
           S A ++I PL       S +R V ++G  E+   A +LI         ++E   Y+Q  +
Sbjct: 161 SKAGIKISPLDNTFYGLS-DRLVTLSGTFEEQMRAIDLI------LAKLTEDDHYSQNVH 220

Query: 286 PPTNNWSQAGQPPLQQQQPPQYGYAPGTYPPPPGPPYYSNYPTQVGSWDQANQSTVQPSD 345
            P                   Y YA   Y    GPPY    P    S   A  ++V  + 
Sbjct: 221 SP-------------------YSYAGLFYSGFHGPPYAYALP----SVATAGYNSVNYAP 255

Query: 346 QSTGYNYYGQQSQVGS 359
             +G  Y   + +  +
Sbjct: 281 NGSGGKYQNHKEEAST 255

[Close]

BLAST of Lsi11G010310 vs. TAIR10
Match: AT5G50940.1 (AT5G50940.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-07
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 40  NAESKRPRFEYESPAVASTPQNPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQT 99
           N+ S  P     SP ++S P++             K      + D SS      YH  +T
Sbjct: 130 NSSSDSPDSHSYSPILSSPPEDYGYGPDDIEAGKMKTDQLKEIGDGSSHVDGRNYHKAET 189

Query: 100 TSKKINIPNIKVGLIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQV 159
           T + I++   KV L++G    T+++LQ    A+I+I +D E D +S  R VEL GT  Q+
Sbjct: 190 T-RTIHVSCPKVDLLVGAAA-TLRFLQHNLCAQIRILKDSEVDLKSAQRPVELTGTVLQI 249

Query: 160 SRAEQLITEVIAE 173
              +QLI  V+AE
Sbjct: 250 EFTQQLIESVLAE 260

[Close]

BLAST of Lsi11G010310 vs. NCBI nr
Match: gi|449438689|ref|XP_004137120.1| (PREDICTED: far upstream element-binding protein 1 [Cucumis sativus])

HSP 1 Score: 812.0 bits (2096), Expect = 6.2e-232
Identity = 453/542 (83.58%), Postives = 466/542 (85.98%), Query Frame = 1


Query: 1   MKDHDDGEQLHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQ 60
           MKDHDD ++LHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYE PA A  PQ
Sbjct: 1   MKDHDDADELHSDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYEPPAPAPPPQ 60

Query: 61  NPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGE 120
           NPPLSSSTF VS              SGT  GPYHGFQTTSKKINIPNIKVGLIIGKGGE
Sbjct: 61  NPPLSSSTFTVS--------------SGTQAGPYHGFQTTSKKINIPNIKVGLIIGKGGE 120

Query: 121 TIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSAS 180
           TIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLI EVIAEADSGGSAS
Sbjct: 121 TIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLINEVIAEADSGGSAS 180

Query: 181 TTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTS 240
           TTNQA+NSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKS ARVQIIPLHLPPGDTS
Sbjct: 181 TTNQAINSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSAARVQIIPLHLPPGDTS 240

Query: 241 TERSVYINGLKEQIESAKELINEVISGKRLVSETTCYAQLTYPPTNNWSQAGQPPLQQQQ 300
           TERSVYINGLKEQIESAKELINEVISGKRLVSETT YAQ TYP TNNWSQAGQ P  QQQ
Sbjct: 241 TERSVYINGLKEQIESAKELINEVISGKRLVSETTSYAQPTYPSTNNWSQAGQQPPLQQQ 300

Query: 301 PPQYGYAPGTYPPPPGPPYYSNYPTQVGSWDQANQSTVQPSDQSTGYNYYGQQSQVGSAP 360
            PQYGYA GTYPPP GPPYYS YP QV SWDQ+NQSTVQPSDQSTGYNYYGQQSQVGSAP
Sbjct: 301 QPQYGYAAGTYPPPQGPPYYSTYPAQVASWDQSNQSTVQPSDQSTGYNYYGQQSQVGSAP 360

Query: 361 PPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALPS 420
           P +HDYSYGQPAS+GTHGYDQSYSQQAPSY     GQIPPSYDQQNMYLNSG AP ALPS
Sbjct: 361 PQFHDYSYGQPASSGTHGYDQSYSQQAPSY-----GQIPPSYDQQNMYLNSGSAPSALPS 420

Query: 421 TNGTSD---PSAAYQVSTGYWTY-PSDPTQPLPQAGNDQSGSYQT-----AQPPVYGQSV 480
           +NGTS+   P+AAYQ STGYWTY  +D TQ LPQ GNDQSGSYQT     AQPPVYGQSV
Sbjct: 421 SNGTSEGTYPTAAYQASTGYWTYQTTDQTQSLPQTGNDQSGSYQTVSGGHAQPPVYGQSV 480

Query: 481 YPPPPGVVYSQGVTPSAAPVTMAQTQSQPPSVHGVETSGDGNSNNGGQSLAPTVQETANS 534
           YPPPPG VYS    P   P  +A TQSQPPS   VETS DGNSN+ GQ+LAPTVQE ANS
Sbjct: 481 YPPPPG-VYSAPAPP--PPEMVAPTQSQPPS---VETSEDGNSNS-GQNLAPTVQENANS 516

[Close]

BLAST of Lsi11G010310 vs. NCBI nr
Match: gi|659109837|ref|XP_008454908.1| (PREDICTED: far upstream element-binding protein 2-like [Cucumis melo])

HSP 1 Score: 736.9 bits (1901), Expect = 2.5e-209
Identity = 409/490 (83.47%), Postives = 419/490 (85.51%), Query Frame = 1


Query: 53  PAVASTPQNPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVG 112
           PA A  P NPPLSSSTFPVS              SGT  GPYHGFQTTSKKINIPNIKVG
Sbjct: 14  PAAAPAPLNPPLSSSTFPVS--------------SGTQAGPYHGFQTTSKKINIPNIKVG 73

Query: 113 LIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAE 172
           LIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLI EVIAE
Sbjct: 74  LIIGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLINEVIAE 133

Query: 173 ADSGGSASTTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPL 232
           ADSGGSASTTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKS ARVQIIPL
Sbjct: 134 ADSGGSASTTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSAARVQIIPL 193

Query: 233 HLPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLVSETTCYAQLTYPPTNNWSQAG 292
           HLPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLVSET  YAQ TYP TNNWSQAG
Sbjct: 194 HLPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLVSETNSYAQPTYPSTNNWSQAG 253

Query: 293 QPPLQQQQPPQYGYAPGTYPPPPGPPYYSNY-PTQVGSWDQANQSTVQPSDQSTGYNYYG 352
           Q P  QQQ PQYGYAPGTYPPPPGP YYS Y PTQV SWDQ+NQST+QPSDQSTGYNYYG
Sbjct: 254 QQPPLQQQQPQYGYAPGTYPPPPGPQYYSTYPPTQVASWDQSNQSTMQPSDQSTGYNYYG 313

Query: 353 QQSQVGSAPPPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNS 412
           QQSQVGSAPPPY DYSYGQPAS+GTHGYDQSYSQQAPSY     GQIPPSYDQQNMYLNS
Sbjct: 314 QQSQVGSAPPPYQDYSYGQPASSGTHGYDQSYSQQAPSY-----GQIPPSYDQQNMYLNS 373

Query: 413 GGAPPALPSTNGTSD---PSAAYQVSTGYWTYPSDPTQPLPQAGNDQSGSYQT-----AQ 472
           G APPALPSTNGTS+   P+AAYQ STGYWTY +DPTQ LPQ GNDQSGSYQT     AQ
Sbjct: 374 GSAPPALPSTNGTSEGTYPTAAYQASTGYWTYQTDPTQSLPQTGNDQSGSYQTVSGGHAQ 433

Query: 473 PPVYGQSVYPPPPGVVYSQGVTPSAAPVTMAQTQSQPPSVHGVETSGDGNSNNGGQSLAP 532
           PPVYGQSVYPPPPG VYS    P+  P T+A  QSQPP    VETS DGN N+ GQ+LAP
Sbjct: 434 PPVYGQSVYPPPPG-VYS---APAPPPETVAPIQSQPPP--SVETSEDGNLNS-GQNLAP 477

Query: 533 TVQETANSGS 534
           TVQETANS S
Sbjct: 494 TVQETANSES 477

[Close]

BLAST of Lsi11G010310 vs. NCBI nr
Match: gi|645262139|ref|XP_008236628.1| (PREDICTED: far upstream element-binding protein 1-like [Prunus mume])

HSP 1 Score: 454.1 bits (1167), Expect = 3.3e-124
Identity = 305/560 (54.46%), Postives = 356/560 (63.57%), Query Frame = 1


Query: 13  DTNKRKLEEN---IQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTF 72
           D+ KRKLE++   I+LAKQKAQEI A+LVS+AESKRPR E E P   S   NPP     +
Sbjct: 16  DSAKRKLEDSSFSIELAKQKAQEIAARLVSDAESKRPRLE-EEPFQPSPVFNPP----AY 75

Query: 73  PVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGETIKYLQLQS 132
           PVS   +              +G  +G   TSKKI IPN KVG+IIGKGGETIK LQLQS
Sbjct: 76  PVSFTAQ--------------SGQSYGSPGTSKKITIPNGKVGVIIGKGGETIKQLQLQS 135

Query: 133 GAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSAS-TTNQAMNS 192
           GAKIQITRD EAD  SLTRDV+L GTSEQ+SRAEQLI++VIAEAD+GGSA  +TNQ  NS
Sbjct: 136 GAKIQITRDSEADLSSLTRDVDLTGTSEQISRAEQLISDVIAEADAGGSAPPSTNQGFNS 195

Query: 193 SQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYIN 252
            QPG EQFVMK+PNNKVAL+IGKGGETI+++QSKS AR+Q++PLHLPPGD S ERSVYIN
Sbjct: 196 IQPGTEQFVMKVPNNKVALIIGKGGETIRNMQSKSGARIQVVPLHLPPGDMSAERSVYIN 255

Query: 253 GLKEQIESAKELINEVISGKRLV--SETTCYAQLTYPPTNNWSQAGQPPLQQQQPPQYGY 312
           G+ EQIE+AKEL+NEVISGKRLV  S T  Y Q +Y P  NW+  GQ P+QQQQ P YGY
Sbjct: 256 GVTEQIEAAKELVNEVISGKRLVNTSGTNSYMQQSYAPPGNWAPPGQAPIQQQQ-PHYGY 315

Query: 313 A-PGTYPPPPGPPYYSNYPTQVGSWDQANQ-STVQPSDQSTGYNYYGQQSQVGSAPPPYH 372
             PG+Y PP    YY NYPTQV  WDQ+NQ  + QP  +S+ YNYYGQQ  +G A PP  
Sbjct: 316 TQPGSYAPPAS--YYGNYPTQVAGWDQSNQVPSSQPPQESSAYNYYGQQPPMGPA-PPNP 375

Query: 373 DYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALPS---- 432
            Y+Y Q     +HGYDQ Y+QQ PSYGQN S Q P S DQQ  Y  SG  PPA+PS    
Sbjct: 376 SYNYNQTPPVASHGYDQGYAQQPPSYGQNISSQAPGS-DQQQQYATSGYGPPAVPSSVDG 435

Query: 433 --TNGTSDPSAAYQV---------STGYWTYPSDPTQPLPQAGNDQS--GSYQTAQPP-- 492
             ++ ++ PSAAY V           GYW       QP  Q G  Q+  G  Q  + P  
Sbjct: 436 SASSQSTQPSAAYPVPYSQPPANSQAGYW-------QPHTQTGYYQTNYGGQQAVEDPSA 495

Query: 493 -----VYGQSVYPPPPGVVYSQGVTP--SAAPVTMAQTQSQPPSVHGVETSG-----DGN 534
                VYGQ  YP P    Y Q V P  +       Q QSQPP+   V+ SG      G 
Sbjct: 496 ASQSAVYGQGGYPQPDPSHYGQAVNPPVNGESQHQPQHQSQPPTNGYVDPSGYAAEKTGE 543

[Close]

BLAST of Lsi11G010310 vs. NCBI nr
Match: gi|595796733|ref|XP_007201191.1| (hypothetical protein PRUPE_ppa002757mg [Prunus persica])

HSP 1 Score: 447.2 bits (1149), Expect = 4.0e-122
Identity = 290/521 (55.66%), Postives = 339/521 (65.07%), Query Frame = 1


Query: 1   MKDHDDGEQ---LHSDTNKRKLEEN---IQLAKQKAQEIVAKLVSNAESKRPRFEYESPA 60
           MK+  D  Q      D+ KRKLE++   I+LAKQKAQEI A+LVS+AESKRPR E E P 
Sbjct: 1   MKEDQDQHQEATATGDSAKRKLEDSSFSIELAKQKAQEIAARLVSDAESKRPRLE-EEPF 60

Query: 61  VASTPQNPPLSSSTFPVSDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLI 120
             S   NPP     +PVS   +              +G  +G   TSKKI IPN KVG+I
Sbjct: 61  QPSPVFNPP----PYPVSFTAQ--------------SGQSYGSPGTSKKITIPNGKVGVI 120

Query: 121 IGKGGETIKYLQLQSGAKIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEAD 180
           IGKGGETIK LQLQSGAKIQITRD EAD  SLTRDV+L GT EQ+SRAEQLI++VIAEAD
Sbjct: 121 IGKGGETIKQLQLQSGAKIQITRDSEADLSSLTRDVDLTGTFEQISRAEQLISDVIAEAD 180

Query: 181 SGGSAS-TTNQAMNSSQPGVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLH 240
           +GGSA  +TNQ  NS QPG EQFVMK+PNNKVAL+IGKGGETI+++QSKS AR+Q++PLH
Sbjct: 181 AGGSAPPSTNQGFNSIQPGTEQFVMKVPNNKVALIIGKGGETIRNMQSKSGARIQVVPLH 240

Query: 241 LPPGDTSTERSVYINGLKEQIESAKELINEVISGKRLV--SETTCYAQLTYPPTNNWSQA 300
           LPPGD S ERSVYING+ EQIE+AKEL+NEVISGKRLV  S T  Y Q +Y P  NW+  
Sbjct: 241 LPPGDMSAERSVYINGVTEQIEAAKELVNEVISGKRLVNTSGTNSYMQQSYAPPGNWAPP 300

Query: 301 GQPPLQQQQPPQYGYA-PGTYPPPPGPPYYSNYPTQVGSWDQANQ-STVQPSDQSTGYNY 360
           GQ P+QQQQ P YGY  PG+Y PP    YY NYPTQ   WDQ+NQ  + QP  +S+ YNY
Sbjct: 301 GQAPIQQQQ-PHYGYTQPGSYAPPAS--YYGNYPTQGAGWDQSNQVPSSQPPQESSAYNY 360

Query: 361 YGQQSQVGSAPPPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYL 420
           YGQQ  +GSA PP   Y+Y Q     +HGYDQ Y+QQ PSYGQN S Q P S DQQ  Y 
Sbjct: 361 YGQQPPMGSA-PPNPSYNYNQTPPVASHGYDQGYAQQPPSYGQNISSQAPGS-DQQQQYA 420

Query: 421 NSGGAPPALPS------TNGTSDPSAAYQV---------STGYWTYPSDPTQPLPQAGND 480
            SG  PPA+PS      ++ ++ PSAAY V           GYW       QP  Q G  
Sbjct: 421 TSGYGPPAVPSSVDGSASSQSTQPSAAYPVPYSQPPANSQAGYW-------QPHTQTGYY 480

Query: 481 QS--GSYQTAQPP-------VYGQSVYPPPPGVVYSQGVTP 487
           Q+  G  Q  + P       VYGQ  YP P    Y + V P
Sbjct: 481 QTSYGGQQAVEDPSAASQSAVYGQGGYPQPDPSHYGEAVNP 490

[Close]

BLAST of Lsi11G010310 vs. NCBI nr
Match: gi|1009115450|ref|XP_015874237.1| (PREDICTED: far upstream element-binding protein 1-like [Ziziphus jujuba])

HSP 1 Score: 428.3 bits (1100), Expect = 1.9e-116
Identity = 298/576 (51.74%), Postives = 351/576 (60.94%), Query Frame = 1


Query: 12  SDTNKRKLEENIQLAKQKAQEIVAKLVSNAESKRPRFEYESPAVASTPQNPPLSSSTFPV 71
           +D++KRKLE+NI LAKQKAQEI A+LVSNAESKRPR + +S         PP +S++   
Sbjct: 19  ADSHKRKLEDNILLAKQKAQEIAARLVSNAESKRPRLDDDSSEAL-----PPSNSNS--- 78

Query: 72  SDNKKLVSCNVLDVSSGTPTGPYHGFQTTSKKINIPNIKVGLIIGKGGETIKYLQLQSGA 131
             N   VS     V         H  Q +SKKI+IPN KVGLIIGKGGETIKYLQ QSGA
Sbjct: 79  --NSNSVSNPPFPVFFAAQA---HAPQGSSKKISIPNGKVGLIIGKGGETIKYLQHQSGA 138

Query: 132 KIQITRDFEADPQSLTRDVELMGTSEQVSRAEQLITEVIAEADSGGSASTTNQAMNSSQP 191
           KIQIT+D EADP SLTRDVEL GTSEQ+SRAEQLI +VI + D+GGSAS+ N   NS Q 
Sbjct: 139 KIQITKDSEADPYSLTRDVELTGTSEQISRAEQLINDVITQTDAGGSASSANHGFNSVQS 198

Query: 192 GVEQFVMKIPNNKVALVIGKGGETIKSIQSKSLARVQIIPLHLPPGDTSTERSVYINGLK 251
           G EQF+MK+PNNKVAL+IGKGGETI+++QSKS AR+QI+PLHLPPGDTSTER+V+I+G K
Sbjct: 199 GAEQFIMKVPNNKVALLIGKGGETIRNMQSKSGARIQIVPLHLPPGDTSTERNVHIDGQK 258

Query: 252 EQIESAKELINEVISGKRLVSET--TCYAQLTYPPTNNWSQAGQPPLQQQQPPQYGYA-P 311
           EQI++AKEL+NEVISGKRLV+ +    Y Q  Y P  NW    QPP+QQQQ PQY Y   
Sbjct: 259 EQIDAAKELVNEVISGKRLVNTSGGNSYVQPAYTPPANWGTQVQPPMQQQQ-PQYDYTQS 318

Query: 312 GTYPPPPGP-PYYSNYPTQVGSWDQANQSTV-QPSDQSTGY-------NYYGQQSQVGSA 371
           G+Y  PP P  YYS YPTQV  WDQANQSTV QP  QSTGY        YYGQQ+Q+GS 
Sbjct: 319 GSYLTPPAPASYYSGYPTQVAGWDQANQSTVSQPPQQSTGYGYYGQQDGYYGQQAQLGST 378

Query: 372 PPPYHDYSYGQPASTGTHGYDQSYSQQAPSYGQNFSGQIPPSYDQQNMYLNSGGAPPALP 431
            P   DYSY Q  +   + YDQSYS Q+ +YG N   Q     DQ     + G  PP +P
Sbjct: 379 -PQNPDYSYNQ--TLPNYSYDQSYSHQSANYGHNIPSQ-AAVLDQPKQNHSLGYGPPPVP 438

Query: 432 ST-NGTSDPSAAYQ---------------VSTGYWTYPSDPTQPLPQAGNDQSGSYQTAQ 491
           S  NGTS    A Q                  GYWTYP+   QP  QA N Q+G +Q   
Sbjct: 439 SNLNGTSFSQTAQQSPGAHHHAHSQPMANPQAGYWTYPNSTNQPPSQAYN-QTGYFQ--- 498

Query: 492 PPVYG---QSVYPPPPGVVYSQG-----VTPSAAPVTMAQTQSQP--------------- 534
            P YG   Q+  PP     Y +G       P  AP +  Q    P               
Sbjct: 499 -PSYGGDQQAQVPPASQSEYGEGGYPFQSAPEPAPASYVQETQHPDHEEPQLEQQSNRLD 558

The following BLAST results are available for this feature:

BLAST of Lsi11G010310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FUBP2_MOUSE	2.4e-18	32.64	Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2	[more]
FUBP2_RAT	2.4e-18	32.64	Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1	[more]
FUBP3_HUMAN	1.6e-17	28.99	Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2	[more]
FUBP2_HUMAN	3.5e-17	31.82	Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4	[more]
FUBP1_HUMAN	3.5e-17	32.92	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3	[more]

BLAST of Lsi11G010310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K828_CUCSA	4.3e-232	83.58	RNA-binding protein Nova-1 OS=Cucumis sativus GN=Csa_7G074890 PE=4 SV=1	[more]
M5W6H0_PRUPE	2.8e-122	55.66	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002757mg PE=4 SV=1	[more]
W9RBH1_9ROSA	5.3e-113	51.50	Far upstream element-binding protein 2 OS=Morus notabilis GN=L484_026897 PE=4 SV...	[more]
B9S767_RICCO	2.8e-106	47.71	RNA-binding protein Nova-1, putative OS=Ricinus communis GN=RCOM_0774000 PE=4 SV...	[more]
A0A067KTI0_JATCU	2.6e-96	47.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04886 PE=4 SV=1	[more]

BLAST of Lsi11G010310 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25970.1	1.6e-76	41.54	KH domain-containing protein	[more]
AT4G10070.1	7.4e-42	36.98	KH domain-containing protein	[more]
AT1G33680.1	1.7e-38	32.55	KH domain-containing protein	[more]
AT5G04430.2	1.2e-07	26.95	binding to TOMV RNA 1L (long form)	[more]
AT5G50940.1	4.6e-07	32.33	RNA-binding KH domain-containing protein	[more]

BLAST of Lsi11G010310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438689\|ref\|XP_004137120.1\|	6.2e-232	83.58	PREDICTED: far upstream element-binding protein 1 [Cucumis sativus]	[more]
gi\|659109837\|ref\|XP_008454908.1\|	2.5e-209	83.47	PREDICTED: far upstream element-binding protein 2-like [Cucumis melo]	[more]
gi\|645262139\|ref\|XP_008236628.1\|	3.3e-124	54.46	PREDICTED: far upstream element-binding protein 1-like [Prunus mume]	[more]
gi\|595796733\|ref\|XP_007201191.1\|	4.0e-122	55.66	hypothetical protein PRUPE_ppa002757mg [Prunus persica]	[more]
gi\|1009115450\|ref\|XP_015874237.1\|	1.9e-116	51.74	PREDICTED: far upstream element-binding protein 1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G010310.1	Lsi11G010310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 192..266 score: 2.6E-14coord: 98..171 score: 2.2
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 188..266 score: 6.2E-18coord: 99..173 score: 8.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 102..168 score: 2.9E-15coord: 197..263 score: 1.1
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 99..166 score: 17.108coord: 193..261 score: 15
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 187..267 score: 8.91E-16coord: 91..174 score: 5.41
None	No IPR available	unknown	Coil	Coil	coord: 16..36 scor
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 21..325 score: 4.3E
None	No IPR available	PANTHER	PTHR10288:SF171	F17H15.1/F17H15.1-RELATED	coord: 21..325 score: 4.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G010310	Csa7G074890	Cucumber (Chinese Long) v2	culsiB495
Lsi11G010310	CSPI07G07870	Wild cucumber (PI 183967)	cpilsiB507
Lsi11G010310	Cucsa.220100	Cucumber (Gy14) v1	cgylsiB361
Lsi11G010310	CmaCh11G017700	Cucurbita maxima (Rimu)	cmalsiB092
Lsi11G010310	CmaCh19G006240	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G010310	CmoCh19G006420	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G010310	CmoCh11G013400	Cucurbita moschata (Rifu)	cmolsiB089
Lsi11G010310	Cla015989	Watermelon (97103) v1	lsiwmB106
Lsi11G010310	MELO3C018428	Melon (DHL92) v3.5.1	lsimeB097
Lsi11G010310	ClCG02G005660	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G010310	MELO3C018428.2	Melon (DHL92) v3.6.1	lsimedB103
Lsi11G010310	Cla97C02G032640	Watermelon (97103) v2	lsiwmbB086
Lsi11G010310	Bhi05G001017	Wax gourd	lsiwgoB115
Lsi11G010310	Cp4.1LG04g08270	Cucurbita pepo (Zucchini)	cpelsiB533
Lsi11G010310	Cp4.1LG15g05080	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G010310	CsGy7G007430	Cucumber (Gy14) v2	cgyblsiB463
Lsi11G010310	Carg22048	Silver-seed gourd	carlsiB186
Lsi11G010310	CsaV3_7G008850	Cucumber (Chinese Long) v3	cuclsiB530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G010310	Bottle gourd (USVL1VR-Ls)	lsilsiB021
Lsi11G010310	Bottle gourd (USVL1VR-Ls)	lsilsiB047
Lsi11G010310	Cucumber (Gy14) v1	cgylsiB146
Lsi11G010310	Cucurbita maxima (Rimu)	cmalsiB562
Lsi11G010310	Cucurbita maxima (Rimu)	cmalsiB784
Lsi11G010310	Cucurbita moschata (Rifu)	cmolsiB545
Lsi11G010310	Cucurbita pepo (Zucchini)	cpelsiB605
Lsi11G010310	Wild cucumber (PI 183967)	cpilsiB097
Lsi11G010310	Wild cucumber (PI 183967)	cpilsiB435
Lsi11G010310	Cucumber (Chinese Long) v2	culsiB102
Lsi11G010310	Melon (DHL92) v3.5.1	lsimeB120
Lsi11G010310	Watermelon (Charleston Gray)	lsiwcgB075
Lsi11G010310	Watermelon (Charleston Gray)	lsiwcgB090
Lsi11G010310	Watermelon (97103) v1	lsiwmB088
Lsi11G010310	Cucumber (Gy14) v2	cgyblsiB090
Lsi11G010310	Melon (DHL92) v3.6.1	lsimedB127
Lsi11G010310	Silver-seed gourd	carlsiB809
Lsi11G010310	Cucumber (Chinese Long) v3	cuclsiB109
Lsi11G010310	Cucumber (Chinese Long) v3	cuclsiB458
Lsi11G010310	Watermelon (97103) v2	lsiwmbB108