Lsi11G008490 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G008490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	R3H domain-containing protein 2
Location	chr11 : 10710465 .. 10715167 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATAATCCTACATTGTACTCTTTTCATTTACATTTTCGATTTTTTCTCTTCTCCTTATGGATGATTATCTGACTCCCCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCCAGCAAGCATCTTATTCTATCCATGGAAGAAACCTTCATAAACTTTCTTCATGATGAAACCAGGTAATGTGTTGGATGATGGTTAGATGATGTTAGTTATTGAATTGGATAATGTTTTTGTGTTTTATTCCACCCAATGGTGATAGGAACAAGTGGAAGGTAATGAGCTCAAACAACAGTAGCTATCTTTCTAGATTTATTTTTTATTTTTTGGATAAGAAATAATTATATTGTTGGTATCAAATTATTACAAAAGTAATGGGAAGAACCCCGCTCTAAAAGAGTTACAAAAGATCTTCCCAGAACATAAACTATAATCATGAAGGAGAGGAGTGCATTTACACCAAGTATTTGTTTTTTTAAAAAGTAATTGTCAAATAAACAACAGCATTAAAAAACCATGTTAGAATAGCTATCTATTTTAGAATGTTAAAATATCCTAATGTGCTTTCTAAAGTCAAATGGTGTAGGATTAGGTGGTTGTCTAGTGAGATTAGTTGAATGGACATCAATCAAGGCTGAAACCTTATTTAGGAAACATCGAGACAATGCTGATAGTTTTAAAAAAGTTTCAACTTACGTCTAATGAGGAAAATGGGCTGCCCTTGCAATGCATTTTTCTAAGAACATATTGGAGCAGAAAGGTGGTCAATTTTTGTTATCTCCCAATAGGTGTTCAGCTAGCATAATCTTGAGGATAGTAACCACTCTTTATTCCTCTGTTTAGTGCATCAGTTCTTAACTCACGTTATTGTTCTTGCCCATTGGAAAATATCTTTAGATGTACATTGTTCTTTACCCATGGCTTGTATGGTGATCACTAACTTTTAATAATTTATTTGAATAGCAGTTCAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTTTTGCATCGCCTTGCTGATATTTTTGGGTACTTTTTCCCCCTTCCACGCTTATTATTTGTTCTAGTTCATTGTAAGGTTGAATTTTTTATTTTCTTGTCAAACTTCATGCCAACCTTTCTAACTTCGTACTTCTTCCACTCCTCTGTCAGATTTGCCCACATATCAGTTGGTGAAGGTGCTAATAGACACTTGGTTTTGGAGCGATGCCCAGAGTCATCGATGTATGTGACCAATTCCAGATCTGACTTCCTTTTTGTTTAATATTTTGATAATGTAAATTGTTATCGATAGAACAATTTATATGGTCATCATTTGGTGCTGCAGTTCGCTTCTCCATGTATGCGCACCTGCCAATTTATTATCCATTTTCTTATTATTAAAAAAATTAGTTAATGAATTATTTTTTAGCATTTTATCTGATTTGATAATTTACAGAGAGAATGCATTCTTGGATCTACCATAAGAATTTTAACAATTCCTGGGTTTTTTTGTTGTTTTCTTATCGTTTTAAGGAAAGTATGAAAGGACACGTTGAGAAATTGTATAAAAACAGCACCCTCATTTTTCCTTTCTTATAAATGTCTTCTCGGTAGAAAAAAGTTTTATTTTGGTTCGGAATAAGGCTTTTGCTAAGAAGCACAGACACGGATACAAGACACCGATACGACACGGACACGGCGACACGCCATATTTTAAATATCTAGGACACGACACGGCAAGGACACGTTTATTAAAATATACATTTTTAAAAATATATATCATTTTCATACCAAAATATGATGCATTTATATGCTTAAAAGACTTACCTTGATGTATTTCACACTCAAAAGTTATTATTATTGTCATATATGTGTCTTTTTAGTCTACTCAACAAGTGTTCAATGCATATCTAACACATTTGTTGCGCTAACAAATGTCTGATGCGTGTCCAACAAGTGTCGAAGTGTCGAAGTGTCGGAGTGTCCGACACGTGTCGGACACGGACACGCTAGCCAAACTAAAGTGTCTGTGCTTCTTAGGGCTTTTGAGATGTATTGTTATTTATACATTGAAATAATTGAATAAGCCTCTCCCTCATTCTTTTTTCCTCGAAGTCTTCTCCACAGAAAGAAGTTCTACTTTAGTTTGGAGTTAGGCTTTAGATCTCTGTTGTTATTCACACTTTAAAAATTTTTATTCAATCCAATGAACTCTGTCCTTTACTCCTTTTGATTGGTTCCACTAGAAATCCATCCTTGTTTGAAATTTAGTCTATACAGGCGGAACTGCAATTTGAGCTTTTTCTCTAGCCATCCTTGTATTCAAGTACAGACAGCATACCACCTTCTCTCTCCCTTGCTTTTGTATTCCAAGCTCTCAACTGCTTCCAGCTGCCCTCATTCCAAATTCTTCTTGTTTTCCTTCCATACAAGCTAATTAGAAAAACTTCCACACGTCCACTCAGAGGGCAAAGAGTTGGACTACGTAGATTAGCTATATGAAAAGATGGAATTCTTGTAATTCTTATCAAACAAGTTCTATTTATGACAAAAACCTTGGGGACGTCATTTGTTTCTTCATCATATTTCATGTATTGCTTAGCTATGAATATATTATGTGATCCAATCTTTCTTTCATCTTTTCAAAGAATGGGAAGAAACCAAATCTCATGATGTGGCTAAAAGTGAAACAAGGCCTCTTATATTTACAAACTGTGGAACCATAGGGGCATGGAAGGAAGGGGTGATACTAATAAAGGTCATTTGTTCATTCACTTTTTTGTGTATTGCAGACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAACCTCAAATGTCAACGATACCACACCAACTATTAAGGAGAAAGGAAAATTCTTCTGGTATACTTTCCTTATTATTTCGTTACAGCATAATCAGTGCCTGCACTTTTTTCCAATTCATGCTATTGATTACAATGATCATCAGAAAGTTTACATGTGCACTTATAATGGACTTGAGGCCATTTGAAGATTGTAGAGGAGATACTATGAAGGTGTAATATTAATTTCATAATTTGTGGAAGTGCCCTGGCCCTACTGTGTTCTTTCTCTCTCTTCATTTTTAATGGCATCAGATGGATAAGAGTAGAATAAAAGGTCTTCTGAGTAGGATTTGATAGGGATTCTGGATCTGAAGTTTGAAGTTTAGTGTGAAAAGGACCTCTGGAATAGAATGAGTATGCAATTATCTCTTTTTAGGGGGAAAAAAAGGAAAATGAAAAAATGCTGTTCCAATTTGCATATATTTGAGGAAGTTTGTTTAATGCCAATTCATCATATTGAAAGTTCTCATTTGTTATGTTGAATGCCTATTCATTTTACTTGCAGATTTACTTTCAAAAAATTTATAAGAAACTGAGTTGCCTATACTTGATGTTCTATTTCAGCGAGTTCAACAAAAGCATCTCCTCAACGTTCACTTGAAGAGAGAGAAGCATCTTATCTGGCTGTCCGTGAGCGCATTTTCATGATGCACATGGGAGAAGACAGCGAACCCGTGAAGCCAAAGCCACGCTGTAATCCTGTGGTTGCACGCCGCATGATTGCACATGCACTGGGCCAAAGAATTAATTCATTTCCTGAGGATACTACTTGTCATTTCAAAGAGCAAGGAGGTATAGTGAACAATGCCTACATCCAAGCAAAAGATTCGAAGTTGCCTGATTCTACTGTGGAAGCTGTTAACAAAACCATTTCACGGTCAGATCAATGTGTGAACTCGAAGAATGAAGTGGATAAGAATTGCAATCCAGACGTGTCATTGGCAAAGGGAAGTAATGCTGTCAAAATGAAACCTGACAAGAGTTCTCCGAAGGCAAGTCGTGTCGACAATGAGTACTTGAAGAGAGAACATTTAGGAGCTGCGAAGAGGATGTTTTCACAGGCTTTAGGCAAGCACTGCCGAAAGAATGATTCTCTTCAAACTCGTGGGGAATCAGATTAAAATGGAATCAGGATTCAAAGATATCTGCAGTAGCTCTTGTTCTCTGGCATGATCTTTTGTCCTATTCACAATTTGTTGTGTTAGGATTGCTGATGCCAACTAAAAGATGAATGGGACTGTGTGATGACAAATTTGTCTACGTCGCATTGAACATGGTCGTCATCGGCGACGTGATCTGGGTGGATGAAACACCTATGGCTGCTAGTTTATGTTGGCAATTCAGTTGGCAAATGTGAAATCTAACATTGCATTCTCTAGCTTATATATTTCTTGATGTGCTCAGAATTCGATCTGGTCATTTGAGAAGCGCTGTTGAGGAGATTGATCTACGTGGTTCAAGCAGAGTCTTGAGAAAAAGGTTGTCGAAATGAATTGGGATTGTATCTGCTCACTGATGAGATGCGCATAGCGGTTTGTGTCGGGTTAAAGTAAAGGTTTCTAACTTAAATTCGTGTTAGTACTTGATTGTTATATCCTATCCTCTCTATTTTCTGCTGATGGCAAATAGCATCTCGTGGATCGTAATGAATGATTATTTACTGGACTCGACGATGTCGGGCAATACACTATGTTTTATGTGAAACTGTACTAATTTTAAGCTTTATTGTTCCCTTTGAAATCTTTGAACTATTGGCAAATACTTTCTTTTGAACGAAGGCCAAAGTGTTCGTGGATTTCAAGTATCTTTATTTTCTTATGGGGCTATAGAGC

mRNA sequence

GCATAATCCTACATTGTACTCTTTTCATTTACATTTTCGATTTTTTCTCTTCTCCTTATGGATGATTATCTGACTCCCCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCCAGCAAGCATCTTATTCTATCCATGGAAGAAACCTTCATAAACTTTCTTCATGATGAAACCAGTTCAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTTTTGCATCGCCTTGCTGATATTTTTGGATTTGCCCACATATCAGTTGGTGAAGGTGCTAATAGACACTTGGTTTTGGAGCGATGCCCAGAGTCATCGATACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAACCTCAAATGTCAACGATACCACACCAACTATTAAGGAGAAAGGAAAATTCTTCTGCGAGTTCAACAAAAGCATCTCCTCAACGTTCACTTGAAGAGAGAGAAGCATCTTATCTGGCTGTCCGTGAGCGCATTTTCATGATGCACATGGGAGAAGACAGCGAACCCGTGAAGCCAAAGCCACGCTGTAATCCTGTGGTTGCACGCCGCATGATTGCACATGCACTGGGCCAAAGAATTAATTCATTTCCTGAGGATACTACTTGTCATTTCAAAGAGCAAGGAGGTATAGTGAACAATGCCTACATCCAAGCAAAAGATTCGAAGTTGCCTGATTCTACTGTGGAAGCTGTTAACAAAACCATTTCACGGTCAGATCAATGTGTGAACTCGAAGAATGAAGTGGATAAGAATTGCAATCCAGACGTGTCATTGGCAAAGGGAAGTAATGCTGTCAAAATGAAACCTGACAAGAGTTCTCCGAAGGCAAGTCGTGTCGACAATGAGTACTTGAAGAGAGAACATTTAGGAGCTGCGAAGAGGATGTTTTCACAGGCTTTAGGCAAGCACTGCCGAAAGAATGATTCTCTTCAAACTCGTGGGGAATCAGATTAAAATGGAATCAGGATTCAAAGATATCTGCAGTAGCTCTTGTTCTCTGGCATGATCTTTTGTCCTATTCACAATTTGTTGTGTTAGGATTGCTGATGCCAACTAAAAGATGAATGGGACTGTGTGATGACAAATTTGTCTACGTCGCATTGAACATGGTCGTCATCGGCGACGTGATCTGGGTGGATGAAACACCTATGGCTGCTAGTTTATGTTGGCAATTCAGTTGGCAAATGTGAAATCTAACATTGCATTCTCTAGCTTATATATTTCTTGATGTGCTCAGAATTCGATCTGGTCATTTGAGAAGCGCTGTTGAGGAGATTGATCTACGTGGTTCAAGCAGAGTCTTGAGAAAAAGGTTGTCGAAATGAATTGGGATTGTATCTGCTCACTGATGAGATGCGCATAGCGGTTTGTGTCGGGTTAAAGTAAAGGTTTCTAACTTAAATTCGTGTTAGTACTTGATTGTTATATCCTATCCTCTCTATTTTCTGCTGATGGCAAATAGCATCTCGTGGATCGTAATGAATGATTATTTACTGGACTCGACGATGTCGGGCAATACACTATGTTTTATGTGAAACTGTACTAATTTTAAGCTTTATTGTTCCCTTTGAAATCTTTGAACTATTGGCAAATACTTTCTTTTGAACGAAGGCCAAAGTGTTCGTGGATTTCAAGTATCTTTATTTTCTTATGGGGCTATAGAGC

Coding sequence (CDS)

ATGGATGATTATCTGACTCCCCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCCAGCAAGCATCTTATTCTATCCATGGAAGAAACCTTCATAAACTTTCTTCATGATGAAACCAGTTCAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTTTTGCATCGCCTTGCTGATATTTTTGGATTTGCCCACATATCAGTTGGTGAAGGTGCTAATAGACACTTGGTTTTGGAGCGATGCCCAGAGTCATCGATACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAACCTCAAATGTCAACGATACCACACCAACTATTAAGGAGAAAGGAAAATTCTTCTGCGAGTTCAACAAAAGCATCTCCTCAACGTTCACTTGAAGAGAGAGAAGCATCTTATCTGGCTGTCCGTGAGCGCATTTTCATGATGCACATGGGAGAAGACAGCGAACCCGTGAAGCCAAAGCCACGCTGTAATCCTGTGGTTGCACGCCGCATGATTGCACATGCACTGGGCCAAAGAATTAATTCATTTCCTGAGGATACTACTTGTCATTTCAAAGAGCAAGGAGGTATAGTGAACAATGCCTACATCCAAGCAAAAGATTCGAAGTTGCCTGATTCTACTGTGGAAGCTGTTAACAAAACCATTTCACGGTCAGATCAATGTGTGAACTCGAAGAATGAAGTGGATAAGAATTGCAATCCAGACGTGTCATTGGCAAAGGGAAGTAATGCTGTCAAAATGAAACCTGACAAGAGTTCTCCGAAGGCAAGTCGTGTCGACAATGAGTACTTGAAGAGAGAACATTTAGGAGCTGCGAAGAGGATGTTTTCACAGGCTTTAGGCAAGCACTGCCGAAAGAATGATTCTCTTCAAACTCGTGGGGAATCAGATTAA

Protein sequence

MDDYLTPQVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFGFAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASSTKASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINSFPEDTTCHFKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKNCNPDVSLAKGSNAVKMKPDKSSPKASRVDNEYLKREHLGAAKRMFSQALGKHCRKNDSLQTRGESD

Homology

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BLAST of Lsi11G008490 vs. TrEMBL
Match: A0A0A0LH15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074070 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 1.7e-148
Identity = 266/301 (88.37%), Postives = 284/301 (94.35%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFG 68
           VEELAFLVKDNLPSKHLILSMEETFINFLH+ETSSDGILEL+PMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLLHRLADIFG 68

Query: 69  FAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128
             H+SVGEG NRHLVLER PESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST
Sbjct: 69  LGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128

Query: 129 KASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINSF 188
           K+SPQRSLEEREA+YLAVRERIFM H+GED+EP+KPKPRC+P VARRMIAHALGQR+NS 
Sbjct: 129 KSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSL 188

Query: 189 PEDTTCHFKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKNCNPDV 248
            EDT CH KEQGG+ NNAYIQA+DSKLPDSTVEA+NKTISRSDQCVN KNE+DKNCNPDV
Sbjct: 189 SEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDV 248

Query: 249 SLAKGSNAVKMKPDKSSPKASRVDNEYLKREHLGAAKRMFSQALGKHCRKNDSLQTRGES 308
           SLA+GS A KMKP KS PKAS VDNE+LKREHLGAAKRMFSQALGKHCRKN+SLQTRGE+
Sbjct: 249 SLARGSTAAKMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRGEA 308

Query: 309 D 310
           D
Sbjct: 309 D 309

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BLAST of Lsi11G008490 vs. TrEMBL
Match: A0A061EY00_THECC (Single-stranded nucleic acid binding R3H protein, putative isoform 1 OS=Theobroma cacao GN=TCM_025347 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 172/313 (54.95%), Postives = 205/313 (65.50%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFG 68
           VEELAFLVKDNLP KHL+LSMEE F+NFL D+TSSDGILELEPM+SYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKDNLPCKHLVLSMEEAFVNFLQDDTSSDGILELEPMNSYNRLLLHRLADIFG 68

Query: 69  FAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128
           FAH SVGEG +RHLVLERCPE+SIPSILVSDILW+ DEPQ  T    LL R+E  + + T
Sbjct: 69  FAHESVGEGDDRHLVLERCPETSIPSILVSDILWQCDEPQSLTTSRHLLVREEAPAVAKT 128

Query: 129 K-ASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINS 188
           +  S + SLE REA+YLA RERIF M + E  EPVK KPR  PVVARRMIAHALGQ+INS
Sbjct: 129 ELPSFELSLEAREAAYLAARERIFSMDVEEVREPVKEKPRTVPVVARRMIAHALGQKINS 188

Query: 189 FPEDTTCH-FKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCV---NSKNEVDKN 248
             ++     FK+  G  N   I  KD       V+   +T +  D      N+ ++ + N
Sbjct: 189 SSQNVNARDFKDHEGQPNELNIHDKDE------VDNNLRTATYQDTVFVPGNAFSKANSN 248

Query: 249 CNPDVSLAKGSNAVKMKPDKSSP--------KASRVDNEYLKREHLGAAKRMFSQALGKH 308
            +   +   G   V  KP +  P          +RV+ EY K EHLGAAKRMF+ ALG  
Sbjct: 249 AHKHNASVVGKRNVSDKPAQKGPSDVRIPGRSRNRVNKEYSKEEHLGAAKRMFAHALGLR 308

[Close]

BLAST of Lsi11G008490 vs. TrEMBL
Match: A0A061EYU8_THECC (Single-stranded nucleic acid binding R3H protein, putative isoform 2 OS=Theobroma cacao GN=TCM_025347 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 172/313 (54.95%), Postives = 205/313 (65.50%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFG 68
           VEELAFLVKDNLP KHL+LSMEE F+NFL D+TSSDGILELEPM+SYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKDNLPCKHLVLSMEEAFVNFLQDDTSSDGILELEPMNSYNRLLLHRLADIFG 68

Query: 69  FAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128
           FAH SVGEG +RHLVLERCPE+SIPSILVSDILW+ DEPQ  T    LL R+E  + + T
Sbjct: 69  FAHESVGEGDDRHLVLERCPETSIPSILVSDILWQCDEPQSLTTSRHLLVREEAPAVAKT 128

Query: 129 K-ASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINS 188
           +  S + SLE REA+YLA RERIF M + E  EPVK KPR  PVVARRMIAHALGQ+INS
Sbjct: 129 ELPSFELSLEAREAAYLAARERIFSMDVEEVREPVKEKPRTVPVVARRMIAHALGQKINS 188

Query: 189 FPEDTTCH-FKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCV---NSKNEVDKN 248
             ++     FK+  G  N   I  KD       V+   +T +  D      N+ ++ + N
Sbjct: 189 SSQNVNARDFKDHEGQPNELNIHDKDE------VDNNLRTATYQDTVFVPGNAFSKANSN 248

Query: 249 CNPDVSLAKGSNAVKMKPDKSSP--------KASRVDNEYLKREHLGAAKRMFSQALGKH 308
            +   +   G   V  KP +  P          +RV+ EY K EHLGAAKRMF+ ALG  
Sbjct: 249 AHKHNASVVGKRNVSDKPAQKGPSDVRIPGRSRNRVNKEYSKEEHLGAAKRMFAHALGLR 308

[Close]

BLAST of Lsi11G008490 vs. TrEMBL
Match: W9S6Y8_9ROSA (R3H domain-containing protein 2 OS=Morus notabilis GN=L484_015106 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 5.3e-73
Identity = 164/293 (55.97%), Postives = 202/293 (68.94%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFG 68
           VEELAFLVKDNLP KHL+LS+EE  +NFL  +TSS GILELEPM+SYNRLL+HRLADIFG
Sbjct: 9   VEELAFLVKDNLPCKHLVLSVEEALVNFLETDTSSCGILELEPMNSYNRLLMHRLADIFG 68

Query: 69  FAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSAS-- 128
           F+H SVGEG +RHL+LERCPE+S+PSILVSDIL +YDEPQ  T  HQLLRR + S  S  
Sbjct: 69  FSHESVGEGDDRHLILERCPETSVPSILVSDILGQYDEPQSPTTSHQLLRRTDASPVSLV 128

Query: 129 STKASP--QRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQR 188
           S   SP    SLEEREA+YLA RERIF + +G + EPV+PKPR  PVVARRMIAHALGQR
Sbjct: 129 SKTQSPLVPHSLEEREAAYLAARERIFSLDLGGEKEPVRPKPRSVPVVARRMIAHALGQR 188

Query: 189 INSFPEDTTCHFKEQG-GIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKN 248
           I S   DTT        G  +   I+ KD    DS+++   + +  S +  +  ++  KN
Sbjct: 189 ITSCNHDTTHKDSSSSEGQTHELNIEGKDKTESDSSLQGYQEIVHLSGKSTSLYSKERKN 248

Query: 249 CN-PDVSLAKGSNAVKMKPDKSSPKASR--VDNEYLKREHLGAAKRMFSQALG 294
            +    S    + A +   +K S   +R  ++ E+ KREHLGAAKRMF+ ALG
Sbjct: 249 YHGTGASSPSDTKAPQKLSEKISTSIARNGMNREHYKREHLGAAKRMFAHALG 301

[Close]

BLAST of Lsi11G008490 vs. TrEMBL
Match: A0A067DWA9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020450mg PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 6.9e-73
Identity = 162/299 (54.18%), Postives = 201/299 (67.22%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFG 68
           VEELAFLVKDNLPSKHL+LSMEE  +NFL D+ S+DG+LELEPMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFG 68

Query: 69  FAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128
           FAH SVGEG +RHL+LERC E+SIPSILVSDILW+Y EPQ  T  HQ+LRRKE       
Sbjct: 69  FAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRKEAPPVLKI 128

Query: 129 KA-SPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINS 188
           ++ S + SL EREA+YLA RERIF M     +EPV+ KPR  P+VA+RMIAHALGQ++ S
Sbjct: 129 QSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKS 188

Query: 189 FPEDTTCHFK-EQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDK---- 248
             +DT    +     + N   I+  D   P++++EA  +T     Q VNS ++ +K    
Sbjct: 189 GDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGK 248

Query: 249 --------NCNPDVSLAKGSNAVKMKPDKSSPKASRVDNEYLKREHLGAAKRMFSQALG 294
                      P  +  K SN V +  +  S  +S  + EYLK E LGAAKR+F+ ALG
Sbjct: 249 STVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSS--NKEYLKEERLGAAKRLFAHALG 305

[Close]

BLAST of Lsi11G008490 vs. NCBI nr
Match: gi|449470259|ref|XP_004152835.1| (PREDICTED: R3H domain-containing protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 533.5 bits (1373), Expect = 2.5e-148
Identity = 266/301 (88.37%), Postives = 284/301 (94.35%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFG 68
           VEELAFLVKDNLPSKHLILSMEETFINFLH+ETSSDGILEL+PMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLLHRLADIFG 68

Query: 69  FAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128
             H+SVGEG NRHLVLER PESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST
Sbjct: 69  LGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128

Query: 129 KASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINSF 188
           K+SPQRSLEEREA+YLAVRERIFM H+GED+EP+KPKPRC+P VARRMIAHALGQR+NS 
Sbjct: 129 KSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSL 188

Query: 189 PEDTTCHFKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKNCNPDV 248
            EDT CH KEQGG+ NNAYIQA+DSKLPDSTVEA+NKTISRSDQCVN KNE+DKNCNPDV
Sbjct: 189 SEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDV 248

Query: 249 SLAKGSNAVKMKPDKSSPKASRVDNEYLKREHLGAAKRMFSQALGKHCRKNDSLQTRGES 308
           SLA+GS A KMKP KS PKAS VDNE+LKREHLGAAKRMFSQALGKHCRKN+SLQTRGE+
Sbjct: 249 SLARGSTAAKMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRGEA 308

Query: 309 D 310
           D
Sbjct: 309 D 309

[Close]

BLAST of Lsi11G008490 vs. NCBI nr
Match: gi|778667822|ref|XP_011648991.1| (PREDICTED: R3H domain-containing protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 528.9 bits (1361), Expect = 6.1e-147
Identity = 266/302 (88.08%), Postives = 284/302 (94.04%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSS-DGILELEPMDSYNRLLLHRLADIF 68
           VEELAFLVKDNLPSKHLILSMEETFINFLH+ETSS DGILEL+PMDSYNRLLLHRLADIF
Sbjct: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHNETSSSDGILELKPMDSYNRLLLHRLADIF 68

Query: 69  GFAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS 128
           G  H+SVGEG NRHLVLER PESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS
Sbjct: 69  GLGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS 128

Query: 129 TKASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINS 188
           TK+SPQRSLEEREA+YLAVRERIFM H+GED+EP+KPKPRC+P VARRMIAHALGQR+NS
Sbjct: 129 TKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNS 188

Query: 189 FPEDTTCHFKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKNCNPD 248
             EDT CH KEQGG+ NNAYIQA+DSKLPDSTVEA+NKTISRSDQCVN KNE+DKNCNPD
Sbjct: 189 LSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPD 248

Query: 249 VSLAKGSNAVKMKPDKSSPKASRVDNEYLKREHLGAAKRMFSQALGKHCRKNDSLQTRGE 308
           VSLA+GS A KMKP KS PKAS VDNE+LKREHLGAAKRMFSQALGKHCRKN+SLQTRGE
Sbjct: 249 VSLARGSTAAKMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRGE 308

Query: 309 SD 310
           +D
Sbjct: 309 AD 310

[Close]

BLAST of Lsi11G008490 vs. NCBI nr
Match: gi|659082547|ref|XP_008441899.1| (PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo])

HSP 1 Score: 510.8 bits (1314), Expect = 1.7e-141
Identity = 261/303 (86.14%), Postives = 281/303 (92.74%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIFG 68
           VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILEL+PMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLLHRLADIFG 68

Query: 69  FAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128
             H+S GEG NRHLVLER PESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS 
Sbjct: 69  LGHVSAGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASSA 128

Query: 129 KASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINSF 188
           K+SPQRSLEERE +YLAVRERIFM H+GED+EP+KPKPRC+P VARRMIAHALGQR+NSF
Sbjct: 129 KSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSF 188

Query: 189 PEDTTCHFKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKNCNPDV 248
           PEDT CH K Q G+ NNAYIQA+DSKLP+STVEA+NKTIS+SDQC+N KNE DKNCNP+V
Sbjct: 189 PEDTNCHRKVQ-GVANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPNV 248

Query: 249 SLAKGSNAVKMKPDKSSPKASR-VDNEYLKREHLGAAKRMFSQALGKHCRKNDSLQTR-G 308
           SLA+GS A KMK DKSSPKAS  VDNE+LKREHLGAAKRMFSQALGKHCRKN+SLQTR G
Sbjct: 249 SLARGSTAAKMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRCG 308

Query: 309 ESD 310
           E+D
Sbjct: 309 EAD 310

[Close]

BLAST of Lsi11G008490 vs. NCBI nr
Match: gi|659082545|ref|XP_008441898.1| (PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo])

HSP 1 Score: 506.1 bits (1302), Expect = 4.2e-140
Identity = 261/304 (85.86%), Postives = 281/304 (92.43%), Query Frame = 1


Query: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSS-DGILELEPMDSYNRLLLHRLADIF 68
           VEELAFLVKDNLPSKHLILSMEETFINFLHDETSS DGILEL+PMDSYNRLLLHRLADIF
Sbjct: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHDETSSSDGILELKPMDSYNRLLLHRLADIF 68

Query: 69  GFAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS 128
           G  H+S GEG NRHLVLER PESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS
Sbjct: 69  GLGHVSAGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS 128

Query: 129 TKASPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRINS 188
            K+SPQRSLEERE +YLAVRERIFM H+GED+EP+KPKPRC+P VARRMIAHALGQR+NS
Sbjct: 129 AKSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAHALGQRVNS 188

Query: 189 FPEDTTCHFKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKNCNPD 248
           FPEDT CH K Q G+ NNAYIQA+DSKLP+STVEA+NKTIS+SDQC+N KNE DKNCNP+
Sbjct: 189 FPEDTNCHRKVQ-GVANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNESDKNCNPN 248

Query: 249 VSLAKGSNAVKMKPDKSSPKASR-VDNEYLKREHLGAAKRMFSQALGKHCRKNDSLQTR- 308
           VSLA+GS A KMK DKSSPKAS  VDNE+LKREHLGAAKRMFSQALGKHCRKN+SLQTR 
Sbjct: 249 VSLARGSTAAKMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHCRKNESLQTRC 308

Query: 309 GESD 310
           GE+D
Sbjct: 309 GEAD 311

[Close]

BLAST of Lsi11G008490 vs. NCBI nr
Match: gi|1009118127|ref|XP_015875695.1| (PREDICTED: uncharacterized protein LOC107412430 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 296.6 bits (758), Expect = 5.1e-77
Identity = 173/315 (54.92%), Postives = 209/315 (66.35%), Query Frame = 1


Query: 8   QVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELEPMDSYNRLLLHRLADIF 67
           +VEELA LVKDNLP KHL+LS+EE  INFL  +TSSDG+LELEPM+SYNRLLLHRLADIF
Sbjct: 30  KVEELASLVKDNLPCKHLVLSVEEVLINFLQTDTSSDGVLELEPMNSYNRLLLHRLADIF 89

Query: 68  GFAHISVGEGANRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASS 127
           GF+H SVGEG +RHL+LERCPE+SIPSILVSDILW+YD+PQ S + HQLL+R E S    
Sbjct: 90  GFSHESVGEGDDRHLILERCPETSIPSILVSDILWQYDDPQSSAMTHQLLKRTETSPVLK 149

Query: 128 TKA-SPQRSLEEREASYLAVRERIFMMHMGEDSEPVKPKPRCNPVVARRMIAHALGQRIN 187
           TK+ S Q SLEEREA+YLA R+RIF M +GE+ EPVK KPR  PVVARRMIAHALGQRI+
Sbjct: 150 TKSPSVQHSLEEREAAYLAARQRIFSMDLGEEKEPVKQKPRSVPVVARRMIAHALGQRIS 209

Query: 188 SFPEDTTC-HFKEQGGIVNNAYIQAKDSKLPDSTVEAVNKTISRSDQCVNSKNEVDKNCN 247
           S  +DT    F   G   +    Q KD    + T +   +++S S     S +EV KN  
Sbjct: 210 SINQDTALKDFSGSGEETDEMKAQDKDKIDLNLTQKTFQESLSLSGTNTKSYDEVKKN-- 269

Query: 248 PDVSLAKGSNAVKMKPDKSSPKAS-------------RVDNEYLKREHLGAAKRMFSQAL 307
            + S    S +    P K + K S              V+ ++ KR+HLGAAKRMF+ AL
Sbjct: 270 -EQSTCASSQSEWKAPQKQAEKVSSSVSISRSGRDRNNVNEDHHKRQHLGAAKRMFAHAL 329

The following BLAST results are available for this feature:

BLAST of Lsi11G008490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G008490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH15_CUCSA	1.7e-148	88.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074070 PE=4 SV=1	[more]
A0A061EY00_THECC	1.1e-73	54.95	Single-stranded nucleic acid binding R3H protein, putative isoform 1 OS=Theobrom...	[more]
A0A061EYU8_THECC	1.1e-73	54.95	Single-stranded nucleic acid binding R3H protein, putative isoform 2 OS=Theobrom...	[more]
W9S6Y8_9ROSA	5.3e-73	55.97	R3H domain-containing protein 2 OS=Morus notabilis GN=L484_015106 PE=4 SV=1	[more]
A0A067DWA9_CITSI	6.9e-73	54.18	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020450mg PE=4 SV=1	[more]

BLAST of Lsi11G008490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi11G008490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470259\|ref\|XP_004152835.1\|	2.5e-148	88.37	PREDICTED: R3H domain-containing protein 1 isoform X2 [Cucumis sativus]	[more]
gi\|778667822\|ref\|XP_011648991.1\|	6.1e-147	88.08	PREDICTED: R3H domain-containing protein 1 isoform X1 [Cucumis sativus]	[more]
gi\|659082547\|ref\|XP_008441899.1\|	1.7e-141	86.14	PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo]	[more]
gi\|659082545\|ref\|XP_008441898.1\|	4.2e-140	85.86	PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo]	[more]
gi\|1009118127\|ref\|XP_015875695.1\|	5.1e-77	54.92	PREDICTED: uncharacterized protein LOC107412430 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024771	SUZ
IPR001374	R3H_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G008490.1	Lsi11G008490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001374	R3H domain	GENE3D	G3DSA:3.30.1370.50		coord: 26..94 score: 5.7
IPR001374	R3H domain	PFAM	PF01424	R3H	coord: 26..85 score: 5.1
IPR001374	R3H domain	SMART	SM00393	R3H_4	coord: 10..87 score: 0.
IPR001374	R3H domain	PROFILE	PS51061	R3H	coord: 23..88 score: 16
IPR001374	R3H domain	unknown	SSF82708	R3H domain	coord: 11..121 score: 7.06
IPR024771	SUZ domain	PFAM	PF12752	SUZ	coord: 117..152 score: 2.
IPR024771	SUZ domain	PROFILE	PS51673	SUZ	coord: 91..155 score: 9
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 9..243 score: 5.1E
None	No IPR available	PANTHER	PTHR15672:SF16	SUBFAMILY NOT NAMED	coord: 9..243 score: 5.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G008490	Csa2G074070	Cucumber (Chinese Long) v2	culsiB098
Lsi11G008490	CSPI02G07060	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G008490	Cucsa.178680	Cucumber (Gy14) v1	cgylsiB300
Lsi11G008490	CmaCh12G009480	Cucurbita maxima (Rimu)	cmalsiB154
Lsi11G008490	CmoCh12G009480	Cucurbita moschata (Rifu)	cmolsiB143
Lsi11G008490	Cla005742	Watermelon (97103) v1	lsiwmB117
Lsi11G008490	MELO3C008758	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G008490	ClCG11G010990	Watermelon (Charleston Gray)	lsiwcgB083
Lsi11G008490	MELO3C008758.2	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G008490	Cla97C11G217140	Watermelon (97103) v2	lsiwmbB078
Lsi11G008490	Cp4.1LG07g07910	Cucurbita pepo (Zucchini)	cpelsiB654
Lsi11G008490	CsGy2G007270	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G008490	Carg22657	Silver-seed gourd	carlsiB004
Lsi11G008490	CsaV3_2G009500	Cucumber (Chinese Long) v3	cuclsiB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G008490	Silver-seed gourd	carlsiB148
Lsi11G008490	Wax gourd	lsiwgoB110
Lsi11G008490	Cucurbita maxima (Rimu)	cmalsiB709
Lsi11G008490	Cucurbita moschata (Rifu)	cmolsiB703
Lsi11G008490	Cucurbita pepo (Zucchini)	cpelsiB070