CsGy2G007270 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G007270
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	R3H domain-containing protein 2
Location	Chr2 : 5824663 .. 5830012 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTCGCCCAATTCGCTATGGTAACTTCTTCTCCATCTTTCTTTCTTTCTTTTCTTTCTTCTTCTTCTTCTTCTTCTTCACTCTTATCTTCTGATTTCACAGAGTCGCTTAATTTTGCTGCAAATTGTAGTAATGTTCTCTTAGTTTAGTTTTCCGATTTTTTCATGGGCTCTAGCATATTTTATATTTTGATTAGTTGACTGTGAAGAACTTGGTAGTTTCTGGATCAGGGTATTAGGTAGTTCGGATTTTTAATTTAATTGATTTTTTTTTTGGCTCCTGGGTTTCGTTTTATATGTGCCAATTTTTTTTTAAGCTTCGGTGATTTGAGATTGTTATATATTTTTAATTTATTTTTCCTTTTTTGATTGGATTTTGGTATGAAAGACCGAATGTTGTTCTGCAAATGGAAGTAATTCATACACTGAATTTCAAGAAAATGTGATGCAGTAGGTTTTCCTTATTTCTTGATATCAAATATTGGAAATCCTTTCTGGAAAAAAAAAGTGTTCTTTGGGTTTTAACGTTTGTATTGCCTCTGACTAGTATCTTGATTCATCTAGGTTAAAAAAACACTCTTGGTTCCTAAACTTGAAGTAAAATAACAACTTAATCTTGAACTTTGGTTTGTGACAATTTAGTCTTTGTAGCTTCAATTTTGTAATGATTTAGTCATTGAACTTTAGTATGTAACAATTTTGTCCCTTTGGTAAAAGAATTCATAAAATTAGATGTTAATTTTTATTAATTTATCATGTAGTCTTTGTAATTTATAAAAATATTGAGTCCCTTATTAGTTTATTGGTTTATTTATGCAATAAACCTCTTTAGATCTTAACACTAGTTTCTACAATAGGAGCTAAATCATTACAAAATTTAAAGTGCAAGAACTAAGTTGGTACACAGTAAAATTTAGGGACTAAATTTTTACAAAACTGGAAGTACGTGGACTAAATGTTGCAAACCAAAGTTCAAGGACGAAATCCTTATTTCTATGAAAGTTTAGGGACTAAAGGGGACTTTTAACAATTCATCTAAATGGATTTTAGGTTTTCATTTAGCAAAGAAAAGAGGAGATTTGTAGTATTATGCACCAGAAGTTCTGGGCAAGTTAATTAATGAAAGAAAATGTTATAGAAATGAAGATATCTTCTGCCATTTTCAGTGGCCAGTGTTTAAAAGCCTTCCCGACTCCGGACCTAGCGCTTGGCATGCAAACAAGGGATGCATTAGGTGTGCATGCCTTTTGTGAAGTCCCATAGCCCAAAGCACTGGCCCTTGGGCCTTTTTTAATTATTTTTAAAGAATAGTAGTTGTTAGGTTTTTTTGTCTGTAGTAACTAAAAAAAATAAGCTTTACTAAGACTAAATTCCAAACTTTTTGTGCTCAGGGTTCCTTTTCCCATTCCCAATTCAATTATACCTTCTAGTCTTATTTAGTAGTTTTATGTATGATATGTGTCTCTCCTATATGTACCACGTTTTTGTTGCGAATTGCATTTAAGTCTCAAAAGACTATTGCGCTTTATTAGCTTTAAAAAAGAGTTTGACTTTCTATCTTCAAACTTGCATTAGTGTACACACATTCTAATCTTCAAAAACAGCTTTTCTCTCTCTCTTTTTCCCCCTTTATGCTAGGACAAGGTAGATTCTTGTGTGTTTGAACGGAGTTGTTTACTAAAATATAAATATTCTAGAACCTTAAGTAGATATCTAATTGTTAGTACTTGCTATTACATAATCCTACATTGTACTCTTTTCGTTAACTTTTTCCATTTTTTTTTTCCGTTATGGCTGATATCTGACTCTCCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCCAGCAAGCATCTTATTCTATCAATGGAAGAAACCTTCATCAACTTTCTTCACGATGAAACCAGGTAATTGTTGGATGATGGTTAGATGATGTTAGTTATTGAATTTTAAAATATTTTCGTATTTCATTCCGCCAATGGTGATGGGACAAGTGGAAGATTATGCGCTCAAACAACAGTAGCTATGTATCTAGATTGGATCCTGTTAGATACTAGATATTTAGTTTGTGTTGGTTAAGGGGCATAAGGGGTTATGGGGGAACAAACAAAATGGCTGTTGGAAGAAAAAAAAAATGAAGAACCTTCCAATGAACATACAACGACACAAACTAAAGAAAAGCTTTAGATTCAAATTCAAACAAATGGGGTAGTTTGGTTGCTTATTGGGCTGGATCTCCAATTCATTTGCAGGCTGAAGAGAAGGTTGTTGGTTATGTGTTTTGATTATGCTAAAAAAAATGGAAGAGGAAGAAGAAGAAGAAAAAGTTTCCCGATTTTGTGATCATGAATGTAAGCTCACCTTGAGGGCAAGGTGTCTTTGACGGGCGGACTAATGTTAGGTACTAGATATGTAGTTTGTGTTGGTTAAGGTGTACAAGGGTAATTAGATAGATACGGAGTTACTAGTAGTTATTGTATGAGGGTAGTTACTAGAGTGGTTACTACTTATTATAAATAGGAGGGTAAGTGGGTGAGGAATTGGTTATTCTGTTGAGTGATCTAGGGCTTGAGTGAGAATACTCAAGAGGGAGGTTCTAAGTGCGTTATACTTGGGTTTTTCTTGTATTTCTTTATAGTGATATTTCATTATATACAAATCGTGTTCTTGTTAGGAAGTATCCTAATAGATCCCGCCCCCCATAAGAAACAATTACTTTGTGGGTAATATCCTAATGGGCTGCCCTTGCCATTTTTCTATGAACACTTTGGAGCAGAAAGGTCAATTTTTGTTATCTCTCAATAGTTGTTTGGCTAGCTAATCTAGAAGATAGTAACCAGTATTTCTTCGTTTGGTTCTTAACTCACATTATGGTTCTTGCCCATTGGAGAATATCTTGAGGTTTACATTGTTCTTTACCCATGGCTTTTATGGTGACCGCTAACTTTTTAGAATTTATTTGAATAGCAGTTCAGATGGAATCTTGGAGTTGAAACCAATGGATTCATACAACCGTCTTCTTTTGCATCGCCTTGCTGATATTTTTGGGTACATTTTTTCCCTTCCATGCATATTATTTGTCTAGTTCGTTGTGAGGTTGAATTTTTTATTTTCTTGTTACTCATGTCAGCCTCTCTAACTTTGTACTTCTCCCCATTCCTCTGTCAGACTTGGCCATGTATCAGTTGGTGAAGGTGATAATAGACACTTGGTTTTGGAGCGATACCCAGAGTCATCAATGTATGTGAACAATTCTAGATCTGACTTCTTTTTGTTCAATATCTTCATAACGTAAATTGTTATTGATAAAACATTTTATCTGGTCATCTATAGCAATTATACATTGAAAGAATTGAATAAGCCTCTTCCTTATTCTTCTTTCCTAGAAGTCTTCTCCACAGAAAGATCAAAGAAGTTCTACTTTAGTTTGGAGTTAAGGCATTTGAGATTTGTTATTATGAATATTCAAGTACAGACAGTATACCACCCTCTCTCTCCCCTGCTTTTGTATTCCAAGTTCTCAGCCGCTGCTCTCATTCCAAATTCTGCTTGTTTTCATTATTGGAAAAGGAGACTTCCTCACGTCCACTCAGGGAAAGAGTTGGACTACACAGCAATGCCATTGGCTATATGAAAAGATGGACTTCTTGTAGTTCTCATCAAACAAGTTTTATTTGTGACAGAAGTCCTTTATTTCTTCATCATATTCATACTTCATTTATTTCTTAGTTATGAATATATTTTGGGATCCAATCTTTCTTTCATCTTTCAAATAAGAAACCAAATTTTATGATATAGCTTAAAGTGAAACTAGGCTTCTTATATTTACAAACTGTGGTACCATAGGGACATGGTAGGACGGGTGATACACTGATACTAATAAAGCTCATTTGTTCATAAACTTTTTGTCTATTGCAGACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAACCTCAAATGTCAACGATACCACACCAACTATTAAGGAGAAAGGAAAATTCTTCTGGTATACTTATTATTTTGTGACGGCATAAGCAGTACCTGCAATTGTTTCAGTTCATGCTATTTAGTATCAATTACAATTTGATCATCAGAAAGTTTTCGTGTGCATTTATTGTTAGAATTAGTGGGCTTTGCTCAAGGAAGGATTTATTCTATTATCCTTTTCTTTTTTATCATAAGTTGTAACCTATTTATCTTCCCTCTTAAATCTTTTGTTAATATGAGAAATTAATAAGACAGTCAATTGTGGTTTTTCTCCCAGCACTCAGGTTTCCATGTAATTTGGTGTCTACTTTACTTTACCGCTTTTAACATTTATAATGGACTTAAGGTCATTTGAAGGCTGCAGAGGAGATGGTATGATGAACATGGAATATTTATTTGTGAAAATTCCCTACTGTGCTCTCTCTCTCTCTCTTCACTTTAAATAGCATTAGAAGGAATGCCACGGTATGAATAGAGTAGAATAAAAGGTCTTCTGACTTCCGAGTAGGATTTGATAGGGATTCTGGATCTGAAGTTTGAAGTTTAGGGTGAACACGACCTCTTTAATTGAACGAACGAGTATGTATGCAAATATCTCATTTTAGGGTAGAAAATAAAATGAAAAATGTTGTTCAAGTTTGCACATTTAACAAAGTTTGTTTAATGTCAGTTCATCATATTGGAAGTTCTCATTTATTATGTTGAATGCCTATTTATTTTACTTGCAGATTTACTTTCAAAAAATTACAAGAAACTGAGTTGCCTATACTTGATGTTGTGTTTCAGCGAGTTCAACAAAATCATCTCCTCAACGTTCGCTTGAAGAGAGAGAAGCAGCTTATCTGGCTGTCCGTGAGCGAATTTTCATGACGCACGTTGGAGAGGATAACGAGCCCCTGAAACCAAAGCCACGATGTGATCCTGCAGTTGCACGACGCATGATTGCTCATGCACTGGGACAGCGAGTTAATTCATTATCAGAGGATACTAATTGCCATCAGAAAGAGCAAGGAGGTGTCACGAACAATGCATACATCCAAGCAAGAGATTCAAAGTTGCCTGATTCTACTGTGGAAGCCATTAACAAAACCATTTCACGGTCGGATCAATGTGTGAACTTGAAGAATGAATTGGATAAGAATTGTAATCCAGACGTGTCATTGGCAAGGGGAAGTACTGCTGCCAAAATGAAACCTGCCAAGAGTTATCCAAAGGCAAGTCATGTCGACAATGAGCACTTGAAGAGAGAACATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTAGGCAAGCACTGCCGAAGGAATGAATCTCTTCAAACTCGTGGGGAAGCAGATTAA

mRNA sequence

ATGACTGTCGCCCAATTCGCTATGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCCAGCAAGCATCTTATTCTATCAATGGAAGAAACCTTCATCAACTTTCTTCACGATGAAACCAGTTCAGATGGAATCTTGGAGTTGAAACCAATGGATTCATACAACCGTCTTCTTTTGCATCGCCTTGCTGATATTTTTGGACTTGGCCATGTATCAGTTGGTGAAGGTGATAATAGACACTTGGTTTTGGAGCGATACCCAGAGTCATCAATACAGTATACCACCCTCTCTCTCCCCTGCTTTTGTATTCCAAGTTCTCAGCCGCTGCTCTCATTCCAAATTCTGCTTGTTTTCATTATTGGAAAAGGAGACTTCCTCACGTCCACTCAGGGAAAGAGTTGGACTACACAGCAATGCCATTGGCTATATGAAAAGATGGACTTCTTACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAACCTCAAATGTCAACGATACCACACCAACTATTAAGGAGAAAGGAAAATTCTTCTGCGAGTTCAACAAAATCATCTCCTCAACGTTCGCTTGAAGAGAGAGAAGCAGCTTATCTGGCTGTCCGTGAGCGAATTTTCATGACGCACGTTGGAGAGGATAACGAGCCCCTGAAACCAAAGCCACGATGTGATCCTGCAGTTGCACGACGCATGATTGCTCATGCACTGGGACAGCGAGTTAATTCATTATCAGAGGATACTAATTGCCATCAGAAAGAGCAAGGAGGTGTCACGAACAATGCATACATCCAAGCAAGAGATTCAAAGTTGCCTGATTCTACTGTGGAAGCCATTAACAAAACCATTTCACGGTCGGATCAATGTGTGAACTTGAAGAATGAATTGGATAAGAATTGTAATCCAGACGTGTCATTGGCAAGGGGAAGTACTGCTGCCAAAATGAAACCTGCCAAGAGTTATCCAAAGGCAAGTCATGTCGACAATGAGCACTTGAAGAGAGAACATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTAGGCAAGCACTGCCGAAGGAATGAATCTCTTCAAACTCGTGGGGAAGCAGATTAA

Coding sequence (CDS)

ATGACTGTCGCCCAATTCGCTATGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCCAGCAAGCATCTTATTCTATCAATGGAAGAAACCTTCATCAACTTTCTTCACGATGAAACCAGTTCAGATGGAATCTTGGAGTTGAAACCAATGGATTCATACAACCGTCTTCTTTTGCATCGCCTTGCTGATATTTTTGGACTTGGCCATGTATCAGTTGGTGAAGGTGATAATAGACACTTGGTTTTGGAGCGATACCCAGAGTCATCAATACAGTATACCACCCTCTCTCTCCCCTGCTTTTGTATTCCAAGTTCTCAGCCGCTGCTCTCATTCCAAATTCTGCTTGTTTTCATTATTGGAAAAGGAGACTTCCTCACGTCCACTCAGGGAAAGAGTTGGACTACACAGCAATGCCATTGGCTATATGAAAAGATGGACTTCTTACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAACCTCAAATGTCAACGATACCACACCAACTATTAAGGAGAAAGGAAAATTCTTCTGCGAGTTCAACAAAATCATCTCCTCAACGTTCGCTTGAAGAGAGAGAAGCAGCTTATCTGGCTGTCCGTGAGCGAATTTTCATGACGCACGTTGGAGAGGATAACGAGCCCCTGAAACCAAAGCCACGATGTGATCCTGCAGTTGCACGACGCATGATTGCTCATGCACTGGGACAGCGAGTTAATTCATTATCAGAGGATACTAATTGCCATCAGAAAGAGCAAGGAGGTGTCACGAACAATGCATACATCCAAGCAAGAGATTCAAAGTTGCCTGATTCTACTGTGGAAGCCATTAACAAAACCATTTCACGGTCGGATCAATGTGTGAACTTGAAGAATGAATTGGATAAGAATTGTAATCCAGACGTGTCATTGGCAAGGGGAAGTACTGCTGCCAAAATGAAACCTGCCAAGAGTTATCCAAAGGCAAGTCATGTCGACAATGAGCACTTGAAGAGAGAACATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTAGGCAAGCACTGCCGAAGGAATGAATCTCTTCAAACTCGTGGGGAAGCAGATTAA

Protein sequence

MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLLHRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFIIGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPDVSLARGSTAAKMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRRNESLQTRGEAD

Homology

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BLAST of CsGy2G007270 vs. NCBI nr
Match: XP_004152835.1 (PREDICTED: R3H domain-containing protein 1 isoform X2 [Cucumis sativus] >KGN61245.1 hypothetical protein Csa_2G074070 [Cucumis sativus])

HSP 1 Score: 531.6 bits (1368), Expect = 2.2e-147
Identity = 307/367 (83.65%), Postives = 309/367 (84.20%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60
           MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLH+ETSSDGILELKPMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLL 60

Query: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFI 120
           HRLADIFGLGHVSVGEGDNRHLVLERYPESSI                            
Sbjct: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSI---------------------------- 120

Query: 121 IGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKEN 180
                                         PSILVSDILWEYDEPQMSTIPHQLLRRKEN
Sbjct: 121 ------------------------------PSILVSDILWEYDEPQMSTIPHQLLRRKEN 180

Query: 181 SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG 240
           SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG
Sbjct: 181 SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG 240

Query: 241 QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK 300
           QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK
Sbjct: 241 QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK 300

Query: 301 NCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNESL 360
           NCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCR+NESL
Sbjct: 301 NCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRKNESL 309

Query: 361 QTRGEAD 368
           QTRGEAD
Sbjct: 361 QTRGEAD 309

[Close]

BLAST of CsGy2G007270 vs. NCBI nr
Match: XP_011648991.1 (PREDICTED: R3H domain-containing protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 526.9 bits (1356), Expect = 5.3e-146
Identity = 307/368 (83.42%), Postives = 309/368 (83.97%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDET-SSDGILELKPMDSYNRLL 60
           MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLH+ET SSDGILELKPMDSYNRLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSSDGILELKPMDSYNRLL 60

Query: 61  LHRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVF 120
           LHRLADIFGLGHVSVGEGDNRHLVLERYPESSI                           
Sbjct: 61  LHRLADIFGLGHVSVGEGDNRHLVLERYPESSI--------------------------- 120

Query: 121 IIGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKE 180
                                          PSILVSDILWEYDEPQMSTIPHQLLRRKE
Sbjct: 121 -------------------------------PSILVSDILWEYDEPQMSTIPHQLLRRKE 180

Query: 181 NSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHAL 240
           NSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHAL
Sbjct: 181 NSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHAL 240

Query: 241 GQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELD 300
           GQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELD
Sbjct: 241 GQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELD 300

Query: 301 KNCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNES 360
           KNCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCR+NES
Sbjct: 301 KNCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRKNES 310

Query: 361 LQTRGEAD 368
           LQTRGEAD
Sbjct: 361 LQTRGEAD 310

[Close]

BLAST of CsGy2G007270 vs. NCBI nr
Match: XP_008441899.1 (PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 6.5e-136
Identity = 272/369 (73.71%), Postives = 279/369 (75.61%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60
           MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60

Query: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFI 120
           HRLADIFGLGHVS GEGDNRHLVLERYPESSI                            
Sbjct: 61  HRLADIFGLGHVSAGEGDNRHLVLERYPESSI---------------------------- 120

Query: 121 IGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKEN 180
                                         PSILVSDILWEYDEPQMSTIPHQLLRRKEN
Sbjct: 121 ------------------------------PSILVSDILWEYDEPQMSTIPHQLLRRKEN 180

Query: 181 SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG 240
           SSASS KSSPQRSLEERE AYLAVRERIFMTH+GEDNEPLKPKPRCDPAVARRMIAHALG
Sbjct: 181 SSASSAKSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAHALG 240

Query: 241 QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK 300
           QRVNS  EDTNCH+K Q GV NNAYIQARDSKLP+STVEAINKTIS+SDQC+NLKNE DK
Sbjct: 241 QRVNSFPEDTNCHRKVQ-GVANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNESDK 300

Query: 301 NCNPDVSLARGSTAAKMK-XXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNES 360
           NCNP+VSLARGSTAAKMK                      GAAKRMFSQALGKHCR+NES
Sbjct: 301 NCNPNVSLARGSTAAKMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHCRKNES 310

Query: 361 LQTR-GEAD 368
           LQTR GEAD
Sbjct: 361 LQTRCGEAD 310

[Close]

BLAST of CsGy2G007270 vs. NCBI nr
Match: XP_008441898.1 (PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo])

HSP 1 Score: 488.8 bits (1257), Expect = 1.6e-134
Identity = 272/370 (73.51%), Postives = 279/370 (75.41%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDET-SSDGILELKPMDSYNRLL 60
           MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDET SSDGILELKPMDSYNRLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSSDGILELKPMDSYNRLL 60

Query: 61  LHRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVF 120
           LHRLADIFGLGHVS GEGDNRHLVLERYPESSI                           
Sbjct: 61  LHRLADIFGLGHVSAGEGDNRHLVLERYPESSI--------------------------- 120

Query: 121 IIGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKE 180
                                          PSILVSDILWEYDEPQMSTIPHQLLRRKE
Sbjct: 121 -------------------------------PSILVSDILWEYDEPQMSTIPHQLLRRKE 180

Query: 181 NSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHAL 240
           NSSASS KSSPQRSLEERE AYLAVRERIFMTH+GEDNEPLKPKPRCDPAVARRMIAHAL
Sbjct: 181 NSSASSAKSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAHAL 240

Query: 241 GQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELD 300
           GQRVNS  EDTNCH+K Q GV NNAYIQARDSKLP+STVEAINKTIS+SDQC+NLKNE D
Sbjct: 241 GQRVNSFPEDTNCHRKVQ-GVANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNESD 300

Query: 301 KNCNPDVSLARGSTAAKMK-XXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNE 360
           KNCNP+VSLARGSTAAKMK                      GAAKRMFSQALGKHCR+NE
Sbjct: 301 KNCNPNVSLARGSTAAKMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHCRKNE 311

Query: 361 SLQTR-GEAD 368
           SLQTR GEAD
Sbjct: 361 SLQTRCGEAD 311

[Close]

BLAST of CsGy2G007270 vs. NCBI nr
Match: XP_022965481.1 (uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima] >XP_022965482.1 uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima])

HSP 1 Score: 402.1 bits (1032), Expect = 2.0e-108
Identity = 225/365 (61.64%), Postives = 244/365 (66.85%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60
           M + QFAMVEELAFLVK+NLPSKHLILSME+ F+ FL DETSSDGILEL+PMDSYNRLLL
Sbjct: 1   MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVKFLQDETSSDGILELEPMDSYNRLLL 60

Query: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFI 120
           HRLADIFG  HVSVGEG +RHLVLER PESS                             
Sbjct: 61  HRLADIFGFAHVSVGEGADRHLVLERCPESS----------------------------- 120

Query: 121 IGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKEN 180
                                        +PSILVSDILWEYDEPQ+STIPHQLLRRKEN
Sbjct: 121 -----------------------------MPSILVSDILWEYDEPQISTIPHQLLRRKEN 180

Query: 181 SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG 240
           SS S  KS PQRS EEREAAYLAVRERIFM H+GED+EP KPKPRCDP VARRMIAHALG
Sbjct: 181 SSVSLEKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALG 240

Query: 241 QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK 300
           +R+NS  E T  H KEQG V NNAY+QA + K PDSTVE +NKT  ++DQCVN KNE+ K
Sbjct: 241 KRINSSPEATTNHCKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQTDQCVNSKNEVSK 300

Query: 301 NCNPDVSLARGS--TAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNE 360
           N NP  S ARGS   AAKMK                     GAAKRMFSQALGK  R+NE
Sbjct: 301 NRNPSRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQGRKNE 307

Query: 361 SLQTR 364
           SLQTR
Sbjct: 361 SLQTR 307

[Close]

BLAST of CsGy2G007270 vs. TrEMBL
Match: tr|A0A0A0LH15|A0A0A0LH15_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.4e-147
Identity = 307/367 (83.65%), Postives = 309/367 (84.20%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60
           MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLH+ETSSDGILELKPMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLL 60

Query: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFI 120
           HRLADIFGLGHVSVGEGDNRHLVLERYPESSI                            
Sbjct: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSI---------------------------- 120

Query: 121 IGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKEN 180
                                         PSILVSDILWEYDEPQMSTIPHQLLRRKEN
Sbjct: 121 ------------------------------PSILVSDILWEYDEPQMSTIPHQLLRRKEN 180

Query: 181 SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG 240
           SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG
Sbjct: 181 SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG 240

Query: 241 QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK 300
           QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK
Sbjct: 241 QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK 300

Query: 301 NCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNESL 360
           NCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCR+NESL
Sbjct: 301 NCNPDVSLARGSTAAKMKXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRKNESL 309

Query: 361 QTRGEAD 368
           QTRGEAD
Sbjct: 361 QTRGEAD 309

[Close]

BLAST of CsGy2G007270 vs. TrEMBL
Match: tr|A0A1S3B4H8|A0A1S3B4H8_CUCME (uncharacterized protein LOC103485903 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485903 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 4.3e-136
Identity = 272/369 (73.71%), Postives = 279/369 (75.61%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60
           MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60

Query: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFI 120
           HRLADIFGLGHVS GEGDNRHLVLERYPESSI                            
Sbjct: 61  HRLADIFGLGHVSAGEGDNRHLVLERYPESSI---------------------------- 120

Query: 121 IGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKEN 180
                                         PSILVSDILWEYDEPQMSTIPHQLLRRKEN
Sbjct: 121 ------------------------------PSILVSDILWEYDEPQMSTIPHQLLRRKEN 180

Query: 181 SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALG 240
           SSASS KSSPQRSLEERE AYLAVRERIFMTH+GEDNEPLKPKPRCDPAVARRMIAHALG
Sbjct: 181 SSASSAKSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAHALG 240

Query: 241 QRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDK 300
           QRVNS  EDTNCH+K Q GV NNAYIQARDSKLP+STVEAINKTIS+SDQC+NLKNE DK
Sbjct: 241 QRVNSFPEDTNCHRKVQ-GVANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNESDK 300

Query: 301 NCNPDVSLARGSTAAKMK-XXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNES 360
           NCNP+VSLARGSTAAKMK                      GAAKRMFSQALGKHCR+NES
Sbjct: 301 NCNPNVSLARGSTAAKMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHCRKNES 310

Query: 361 LQTR-GEAD 368
           LQTR GEAD
Sbjct: 361 LQTRCGEAD 310

[Close]

BLAST of CsGy2G007270 vs. TrEMBL
Match: tr|A0A1S3B4G2|A0A1S3B4G2_CUCME (uncharacterized protein LOC103485903 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485903 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.1e-134
Identity = 272/370 (73.51%), Postives = 279/370 (75.41%), Query Frame = 0


Query: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDET-SSDGILELKPMDSYNRLL 60
           MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDET SSDGILELKPMDSYNRLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSSDGILELKPMDSYNRLL 60

Query: 61  LHRLADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVF 120
           LHRLADIFGLGHVS GEGDNRHLVLERYPESSI                           
Sbjct: 61  LHRLADIFGLGHVSAGEGDNRHLVLERYPESSI--------------------------- 120

Query: 121 IIGKGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKE 180
                                          PSILVSDILWEYDEPQMSTIPHQLLRRKE
Sbjct: 121 -------------------------------PSILVSDILWEYDEPQMSTIPHQLLRRKE 180

Query: 181 NSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHAL 240
           NSSASS KSSPQRSLEERE AYLAVRERIFMTH+GEDNEPLKPKPRCDPAVARRMIAHAL
Sbjct: 181 NSSASSAKSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAHAL 240

Query: 241 GQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELD 300
           GQRVNS  EDTNCH+K Q GV NNAYIQARDSKLP+STVEAINKTIS+SDQC+NLKNE D
Sbjct: 241 GQRVNSFPEDTNCHRKVQ-GVANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNESD 300

Query: 301 KNCNPDVSLARGSTAAKMK-XXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHCRRNE 360
           KNCNP+VSLARGSTAAKMK                      GAAKRMFSQALGKHCR+NE
Sbjct: 301 KNCNPNVSLARGSTAAKMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHCRKNE 311

Query: 361 SLQTR-GEAD 368
           SLQTR GEAD
Sbjct: 361 SLQTRCGEAD 311

[Close]

BLAST of CsGy2G007270 vs. TrEMBL
Match: tr|A0A2P5AN61|A0A2P5AN61_9ROSA (R3H domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_346350 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 170/372 (45.70%), Postives = 202/372 (54.30%), Query Frame = 0


Query: 3   VAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLLHR 62
           + QFAMVEELAFLVKDNLP KHL+LS+EE  +NFL  +TSS GILEL+PM+SYNRLL+HR
Sbjct: 1   MTQFAMVEELAFLVKDNLPCKHLVLSVEEALVNFLESDTSSCGILELEPMNSYNRLLMHR 60

Query: 63  LADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFIIG 122
           LADIFG  H SVGEGD+RHL+LER P++SI                              
Sbjct: 61  LADIFGFSHESVGEGDDRHLILERCPDTSI------------------------------ 120

Query: 123 KGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKENSS 182
                                       PSILVSDILW+YDEPQ  T  HQLLRR E+S 
Sbjct: 121 ----------------------------PSILVSDILWQYDEPQSPTTSHQLLRRTEDSP 180

Query: 183 ASSTKS-SPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALGQ 242
              TKS S Q SLEEREAAYLA RERIF  ++GE+ EP+K KPR  P VARRMIAHALGQ
Sbjct: 181 VLKTKSPSVQHSLEEREAAYLAARERIFSVNLGEEKEPVKQKPRTVPVVARRMIAHALGQ 240

Query: 243 RVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKN 302
           R+NS + +T        GV  +  IQ +D    D  VE   +T+  S    NL  +++KN
Sbjct: 241 RINSCNHETAHKALSGSGVQTDVNIQRKDKVESDLNVEDFQETLHLSGNNKNLYCKVEKN 300

Query: 303 CN-PDVSLARGSTAAKM-------KXXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKH 362
            +    S    S A K+                             GAAKRMF+QALGK 
Sbjct: 301 NHITGPSPVSHSKALKITSDNISGSVVASGRDRNDVGEEYYKKEQLGAAKRMFAQALGKQ 314

Query: 363 CRRNESLQTRGE 366
             +  SL    E
Sbjct: 361 AGKETSLSKSSE 314

[Close]

BLAST of CsGy2G007270 vs. TrEMBL
Match: tr|A0A2P5B9P0|A0A2P5B9P0_PARAD (R3H domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_258610 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.8e-66
Identity = 165/371 (44.47%), Postives = 201/371 (54.18%), Query Frame = 0


Query: 3   VAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLLHR 62
           + QFAMVEELAFLVKDNLP KHL+LS+EE  +NFL  +TSS GILEL+PM+SYNRLL+HR
Sbjct: 1   MTQFAMVEELAFLVKDNLPCKHLVLSVEEALVNFLESDTSSCGILELEPMNSYNRLLMHR 60

Query: 63  LADIFGLGHVSVGEGDNRHLVLERYPESSIQYTTLSLPCFCIPSSQPLLSFQILLVFIIG 122
           LADIFG  H SVGEGD+RHL+LER P++S+                              
Sbjct: 61  LADIFGFSHESVGEGDDRHLILERCPDTSV------------------------------ 120

Query: 123 KGDFLTSTQGKSWTTQQCHWLYEKMDFLPSILVSDILWEYDEPQMSTIPHQLLRRKENSS 182
                                       PSILVSDILW+YDEPQ  T  HQLLRR E+S 
Sbjct: 121 ----------------------------PSILVSDILWQYDEPQSQTTSHQLLRRTEDSP 180

Query: 183 ASSTKS-SPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALGQ 242
              TKS S Q SL+EREAAYLA RERIF  ++GE+ EP+K KPR  P VARRMIAHALGQ
Sbjct: 181 VLKTKSPSVQHSLQEREAAYLAARERIFSVNLGEEKEPVKQKPRTVPVVARRMIAHALGQ 240

Query: 243 RVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKN 302
           R+NS + +T        G   +  I+ +D    D  VE   +T+  S    NL  +++KN
Sbjct: 241 RINSCNHETAHKALSGSGGQTDVNIRRKDKVESDLIVEDFQETLHLSGNNKNLYCKVEKN 300

Query: 303 CN----PDVSLARGSTAAKMK---XXXXXXXXXXXXXXXXXXXXXGAAKRMFSQALGKHC 362
            +    P VS ++       K                        GAAKRMF+QALGK  
Sbjct: 301 NHITGPPSVSHSKAPKITSDKISGSVASGRDRNDVGEEYYKKEQLGAAKRMFAQALGKQA 313

Query: 363 RRNESLQTRGE 366
            +   L    E
Sbjct: 361 GKETFLSKSSE 313

The following BLAST results are available for this feature:

BLAST of CsGy2G007270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152835.1	2.2e-147	83.65	PREDICTED: R3H domain-containing protein 1 isoform X2 [Cucumis sativus] >KGN6124...	[more]
XP_011648991.1	5.3e-146	83.42	PREDICTED: R3H domain-containing protein 1 isoform X1 [Cucumis sativus]	[more]
XP_008441899.1	6.5e-136	73.71	PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo]	[more]
XP_008441898.1	1.6e-134	73.51	PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo]	[more]
XP_022965481.1	2.0e-108	61.64	uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima] >XP_022965482...	[more]

BLAST of CsGy2G007270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G007270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G007270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LH15\|A0A0A0LH15_CUCSA	1.4e-147	83.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1	[more]
tr\|A0A1S3B4H8\|A0A1S3B4H8_CUCME	4.3e-136	73.71	uncharacterized protein LOC103485903 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B4G2\|A0A1S3B4G2_CUCME	1.1e-134	73.51	uncharacterized protein LOC103485903 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P5AN61\|A0A2P5AN61_9ROSA	1.1e-67	45.70	R3H domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_346350 ...	[more]
tr\|A0A2P5B9P0\|A0A2P5B9P0_PARAD	2.8e-66	44.47	R3H domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_258...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024771	SUZ
IPR036867	R3H_dom_sf
IPR001374	R3H_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G007270.1	CsGy2G007270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001374	R3H domain	SMART	SM00393	R3H_4	coord: 10..87 e-value: 1.9E-5 score: 34.1
IPR001374	R3H domain	PFAM	PF01424	R3H	coord: 26..85 e-value: 6.7E-16 score: 57.9
IPR001374	R3H domain	PROSITE	PS51061	R3H	coord: 23..88 score: 17.164
IPR036867	R3H domain superfamily	GENE3D	G3DSA:3.30.1370.50		coord: 3..101 e-value: 2.3E-14 score: 55.1
IPR036867	R3H domain superfamily	SUPERFAMILY	SSF82708	R3H domain	coord: 14..98
IPR024771	SUZ domain	PFAM	PF12752	SUZ	coord: 174..211 e-value: 3.2E-10 score: 40.5
IPR024771	SUZ domain	PROSITE	PS51673	SUZ	coord: 149..213 score: 10.041
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..190
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 150..275 coord: 10..92
None	No IPR available	PANTHER	PTHR15672:SF8	PROTEIN ENCORE	coord: 150..275
None	No IPR available	PANTHER	PTHR15672:SF8	PROTEIN ENCORE	coord: 10..92
None	No IPR available	CDD	cd02642	R3H_encore_like	coord: 22..80 e-value: 5.75978E-17 score: 73.4057

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G007270	Cla005742	Watermelon (97103) v1	cgybwmB155
CsGy2G007270	Csa2G074070	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G007270	MELO3C008758	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G007270	ClCG11G010990	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G007270	CSPI02G07060	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G007270	CmaCh12G009480	Cucurbita maxima (Rimu)	cgybcmaB169
CsGy2G007270	CmoCh12G009480	Cucurbita moschata (Rifu)	cgybcmoB161
CsGy2G007270	Lsi11G008490	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G007270	Cp4.1LG07g07910	Cucurbita pepo (Zucchini)	cgybcpeB261
CsGy2G007270	MELO3C008758.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G007270	CsaV3_2G009500	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G007270	Cla97C11G217140	Watermelon (97103) v2	cgybwmbB104
CsGy2G007270	Carg22657	Silver-seed gourd	carcgybB0004

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G007270	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G007270	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G007270	Cucurbita pepo (Zucchini)	cgybcpeB163
CsGy2G007270	Silver-seed gourd	carcgybB0179
CsGy2G007270	Wax gourd	cgybwgoB132