Cp4.1LG07g07910 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g07910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	R3H domain protein
Location	Cp4.1LG07 : 7000128 .. 7004430 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTCAGGCTCGTTAAAACCCGTAGTTGTGAGCCTTCTCCGGAAATCCATCGCCCCCATTGAAACTCCCATTCAGTCTTCAACCTTCTTACCTACAATGGCTATCACCCAATTCGCCATGGTAACTTCTTCTTCTTTCTCTTTACTGCTTTCTTCTCACTTCACGAAGAATCGCATATTTTATCTCTAAATTGTTAGATTCTCTCAGTTGAATTCTCAGAATCCTTGGCGGGCTCTAGCATTTTTGGTATTTTTGATGAACTCACAGTGATGTACTTGGTGGTTTCTGGATCAGGGTATTAGGTAGTGCGGATTTTTGGTTTAATTGCGTTTTTTTGTAGGGTAATCGGTAGTTTCTGGATCAGGTTCAGTGATTTGAGATTTTGATGTATTTTTTGGTTTGTTGATTCTGCTTGGAATTGGAATTTGGCATATAAAAAGATGAGAAGGAGTGATTCAGTGAGTGTTATTCCCGGAAATGGAAGTAATTCGTACGCTGGAGTTCTGGAAATTTTGATGCAGTAGTTTTTTCGTTCTTTCTTATTATCAATAATTGGAACTCTTTTTTTGAAAATATTGTGTTCTTCGGGTTTATCCTTTTGTACTCCCTGTGATCAGTACCTTTATTCGTGTAAATGAAATTTAGTTCTTCAGCAAACAAAAAGAATAGATTTGTAGCGTAATATGCTGGAAGTTCTGGGAAAGTTGGTTAATGTCTGAAGCAATATGTTGTAAGATCAAGATGGGTTCTGACATTTTCTGTAGTTTTTTTATCTTCAAACCTTCCCTGGTGTACGCGTATTTCGATATTCGACGGTAGTTCTTTTCCATTTTTATGGATAAAGGTAGATTCCTTTAGTGCTAGAACAGCTAGTATTTGCAGTTACATAATTCTGCATTGTGCTATTTTCGTTAACATTCCTTTTTTTTCTTTTTTTCTTTTTCTCCTTATTGATGATATTTGACTCCTCAGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTCTTCGTCAAGTTTCTTCAGGATGAAACCAGGTAATGTGTTGATGATGATTACATGATGTTAGTTAGGTACTTTATGATATTATATTTGAAGTAGTTGTTCGAATTCCTTATGATATGCAACTGAAAGAAAAGAGACAGTTTGAATGTCGGGGTTGTTCTTATTTTACCCAAAGGGTTTGAATTAGCCCCCGACCCCGATCGTCCGTATTCCTCCCGAGATTAAAGAAACGATGGGCAATTTGTCTTTTCAGAGCTATCGTCCAATTTAGTAATATTTTTGTAATTTAGTAATATTTTTGTGTTTCAATTCCACCCAAGTGTGAAAGGGAAAAGTGGAAGGTTATGGTCTCAAACAAGGGTAGTTATCTATTTAGACGATAGCAACCACTTTTTATTCTGATGTTTGGTGCACTACTTCTCAAATTTCACTTTTATCTTGCATTTGAATAGCTTTAGATTTACATTGTTCTTTACCTATGGCTTGAATGGCGATCACTAACTTCAAATAATTGTTGCGGGTAGCAGTTCGGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTGCATCGCCTTGCTGATATTTTTGGGTGCCTTTTTCCCCCTCTTCTAGTTTGTATAAGGCTGAATTCTTAATTTTCTATGTCAAACTTTATGCCTACCTTCCTAAGTTTGTTCTTCTTCCCAATTCCTCTCTCAGATTTTCCCATGTATCAGTTGGTGAAGGAGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGTATTGAGAAATTCCTTACCGGAATTCCTTTTGGTTTAATATTTTCATATTCTAAATTGTTATTGGTATTGTATTTGATCTGATGTTGAAGCTAGGAATTTGAACAATTCCCGTGTCTATGCGTTTTCTTTACACTTGAAATAATTGAATAGAAAACTCACCCTCATTTTTATTTTCTTATAAACATCTTCACTATAGAAAAATGTTTTACTTTGAATTGGAGTTAGGCTCTTGAGATCTTTTATTATTTTTTGTATTGAAATAATTGAATAAACCTCTTAGTCCCCTTGATTTTGATTCAATGCAATGAACTCTTAGTCCTTTCTGCCTTTGATCAGCTCCACTAGGAATCCGTCCTGTTCTGAAATTTAGTCTGTATAGGAGGAAATGCAATCCAAGCTTTTCTCTAGTTATACTTGAATACAAGTAGGGATTACATACCACCCTCTCTCTCCCTTGCTATTGTGATTCACATTCTATTGGTTTTTCCCCAAATCGTACATCGACTCAGAGGGAGAAGATTTGGACTGCATAGGCGCACATCATAAGCTATATGGAAAGATGGACTATTTGTAATTCTTATCCATTAAGTTTTATTTATGACAAAAAAAACATTGGGATGTCATTTATTTCTTCATCATAGCTCACGTATTGCTTAAAGTGAAACGAGGATTCTTATATTTACGAACTATGAAACTGTAGGGGTATGGTAGGGACATGGGTGGTTCTAATAAAGGTCATTTGTTCATTAGCTTATTTGTGTATTGCAGGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGGTATACTATTGTTTCATACAGCATAATCCCTACCTGCAAATTTTTTCCAATTCATGCTATTGATTGCTATTTGATCATCAGAAAGACATGTGCACTAATAGTGGAGTTGTGGCCATTTGAAGATAGTAGAGGAGATAGTATGAACGTGTAATATTAATTTGTGAAAATGCCCTGCTGTGGTCTCTCTCTCTCTCTCTCTCTCTCTCCATATAATGGCATCAAAGGGAGTGATGCAGTGTGGAGAAACGTTGCTGTAGAGTAGAATAAAAGGTCTTCTCAGTAGGATTTGATAGGGATTCTGGATCTGAAGATTGAAGTTTAGGGAGAAAAGTAACTCTATGATAGAATGTGTATGTAAATATCTTTTTTGGGGGGTAAAAATGCTGTTCCAATTTTCACATGTACATGGAAGTTTGTTCAATCCCAAATTTGCAGATTTTCTTTCAGAAGGATTATAAGAAACTGAGTTGCCTGTACTTGATGTTCTATTTCAGTGAGTTTGAAGAAATCACCTCCTCAACGGTCTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTTCCAACCATAGCAAAGAGCAAGGAAGTGTAGCTAACAACGCATACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAGTTGCAGCCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCAGCAAGGGGAAGTAATGCTGCTGCTCCCAAAATGAAAGCAGACAAGAGTTCTCCTAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGAGGGGAAGCAGACCTTTTGTAGCTCTTATTTTCTGGCCTGACCTTATGTCCTAAGTTGTCAGGATTACTGGTGCCGACAAAAAGATTCATGAGCGATAATGTATGAAGAACGTGGTTGTCATCGGCGACCTGACCGGGACGGATAAAAATGCTCACAGCTGCTACAGCTAGCCTATGTTGCCAATAGATTTGGCGAACATAAGAATCTAACATTACGTAATCTAGATTATGTATTCCTTGTATGTGCTTGGAATTTGTCCCGGTCGTTTAAGTTTAAGCAGCGCTGTATGAGAAGATTGAATTACGTGGGTCGAGTGGAGTCGTAAGCAAAAGGTTATGGTACTATAAATTGGGAACAGATCTGTTCACTGATTGAGCTGTGCATAGCTGAGTTTTATGTTGGTCAAAGTAAAGGTTTCTAACTTAAATTTGTGTTAGAGTTCTTGCTTTATTAGATCCTCTCTCTTTGCTGTTGATGCTTAATGTTGAGCATCTTGTGTGTCGTCATTCAATATATACTTGGACTCCTTAATATCAGTTGATATATCGTGTTTTACGTGATA

mRNA sequence

ACGTCAGGCTCGTTAAAACCCGTAGTTGTGAGCCTTCTCCGGAAATCCATCGCCCCCATTGAAACTCCCATTCAGTCTTCAACCTTCTTACCTACAATGGCTATCACCCAATTCGCCATGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTCTTCGTCAATTCGGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTGCATCGCCTTGCTGATATTTTTGGATTTTCCCATGTATCAGTTGGTGAAGGAGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGTGAGTTTGAAGAAATCACCTCCTCAACGGTCTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTTCCAACCATAGCAAAGAGCAAGGAAGTGTAGCTAACAACGCATACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAGTTGCAGCCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCAGCAAGGGGAAGTAATGCTGCTGCTCCCAAAATGAAAGCAGACAAGAGTTCTCCTAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGAGGGGAAGCAGACCTTTTGTAGCTCTTATTTTCTGGCCTGACCTTATGTCCTAAGTTGTCAGGATTACTGGTGCCGACAAAAAGATTCATGAGCGATAATGTATGAAGAACGTGGTTGTCATCGGCGACCTGACCGGGACGGATAAAAATGCTCACAGCTGCTACAGCTAGCCTATGTTGCCAATAGATTTGGCGAACATAAGAATCTAACATTACGTAATCTAGATTATGTATTCCTTGTATGTGCTTGGAATTTGTCCCGGTCGTTTAAGTTTAAGCAGCGCTGTATGAGAAGATTGAATTACGTGGGTCGAGTGGAGTCGTAAGCAAAAGGTTATGGTACTATAAATTGGGAACAGATCTGTTCACTGATTGAGCTGTGCATAGCTGAGTTTTATGTTGGTCAAAGTAAAGGTTTCTAACTTAAATTTGTGTTAGAGTTCTTGCTTTATTAGATCCTCTCTCTTTGCTGTTGATGCTTAATGTTGAGCATCTTGTGTGTCGTCATTCAATATATACTTGGACTCCTTAATATCAGTTGATATATCGTGTTTTACGTGATA

Coding sequence (CDS)

ACGTCAGGCTCGTTAAAACCCGTAGTTGTGAGCCTTCTCCGGAAATCCATCGCCCCCATTGAAACTCCCATTCAGTCTTCAACCTTCTTACCTACAATGGCTATCACCCAATTCGCCATGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTCTTCGTCAATTCGGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTGCATCGCCTTGCTGATATTTTTGGATTTTCCCATGTATCAGTTGGTGAAGGAGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGTGAGTTTGAAGAAATCACCTCCTCAACGGTCTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTTCCAACCATAGCAAAGAGCAAGGAAGTGTAGCTAACAACGCATACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAGTTGCAGCCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCAGCAAGGGGAAGTAATGCTGCTGCTCCCAAAATGAAAGCAGACAAGAGTTCTCCTAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGA

Protein sequence

TSGSLKPVVVSLLRKSIAPIETPIQSSTFLPTMAITQFAMVEELAFLVKENLPSKHLILSMEDVFVNSDGILELEPMDSYNRLLLHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR

Homology

[Close]

BLAST of Cp4.1LG07g07910 vs. TrEMBL
Match: A0A0A0LH15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074070 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.8e-119
Identity = 236/307 (76.87%), Postives = 254/307 (82.74%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN-------SDGILELEPMDSYNRLLL 92
           M + QFAMVEELAFLVK+NLPSKHLILSME+ F+N       SDGILEL+PMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFG  HVSVGEG +RHLVLER PESS+PSILVSDILWEYDEPQ+STIPHQLLRRK
Sbjct: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSS S  KS PQRS EEREAAYLAVRERIFM H+GED+EP KPKPRCDP VARRMIAHA
Sbjct: 121 ENSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LG+R+NS  E T+ H KEQG V NNAY+QA + K PDSTVE +NKT  + DQCVN KNE 
Sbjct: 181 LGQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNEL 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
            KN NP  S ARGS AA  KMK  KS PKAS VDNE+LKREHLGAAKRMFSQALGK  RK
Sbjct: 241 DKNCNPDVSLARGSTAA--KMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. TrEMBL
Match: A0A067DWA9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020450mg PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.7e-72
Identity = 166/312 (53.21%), Postives = 214/312 (68.59%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN-------SDGILELEPMDSYNRLLL 92
           M+ TQFAMVEELAFLVK+NLPSKHL+LSME+  VN       +DG+LELEPMDSYNRLLL
Sbjct: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFGF+H SVGEGVDRHL+LERC E+S+PSILVSDILW+Y EPQ  T  HQ+LRRK
Sbjct: 61  HRLADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRK 120

Query: 153 ENSSVSLKKSPP-QRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAH 212
           E   V   +SP  + S  EREAAYLA RERIF M     +EP + KPR  P+VA+RMIAH
Sbjct: 121 EAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAH 180

Query: 213 ALGKRINSSPEATSNHSK-EQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKN 272
           ALG+++ S  + T+   +     +AN   ++ ++   P++++E   +T L P Q VNS +
Sbjct: 181 ALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLD 240

Query: 273 EAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDN---------EYLKREHLGAAKRM 327
           ++ K +     S++ S+  AP+  ++KSS   S   N         EYLK E LGAAKR+
Sbjct: 241 KSNKKKGKSTVSSQ-SDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRL 300

[Close]

BLAST of Cp4.1LG07g07910 vs. TrEMBL
Match: A0A0L9THK9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s005800 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.0e-70
Identity = 168/318 (52.83%), Postives = 209/318 (65.72%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN--------SDGILELEPMDSYNRLL 92
           M++TQFAMVEELAFLVK+NL  KHL+L+ME+V VN        SDGILELEPM+SYNRLL
Sbjct: 1   MSMTQFAMVEELAFLVKDNLSCKHLVLTMEEVLVNFLQDDHTSSDGILELEPMNSYNRLL 60

Query: 93  LHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEY-DEPQISTIPHQLLR 152
           LHRLA+IFGF+H SVGEG DRHL+LERCP++S+P ILVSDILW+Y DEPQ     HQ+LR
Sbjct: 61  LHRLAEIFGFAHESVGEGDDRHLILERCPDTSIPPILVSDILWKYDDEPQSLVTSHQILR 120

Query: 153 RKENSSVS-LKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMI 212
           R E SSVS   K+   +S EER+AAYL  RERIF M + E  EP + KPR  PVVARRMI
Sbjct: 121 RSEASSVSQTNKTSFSKSLEERKAAYLVARERIFSMKLEEVKEPGEQKPRSVPVVARRMI 180

Query: 213 AHALGKRINSSPEATSNHSKEQGSVANNAYVQA---NELKEPDSTVEVVNKTKLQPDQCV 272
           AHALG+RI         H+K Q  +A+++       +EL   D   EV N TK   +   
Sbjct: 181 AHALGQRI---------HTKNQSGLASDSINDGGLKDELNVQDKNSEVSNLTKDSEEILC 240

Query: 273 NSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSP-------KASCVDNEYLKREHLGAAK 331
             +N   + RN   S+A   N    +    + SP       +   V+ +Y+K+EHLGAAK
Sbjct: 241 LRRNPNNRIRNSSSSNASSHNKRNDQTPVHEESPLFSQDTTQGQTVNKDYMKKEHLGAAK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. TrEMBL
Match: A0A0S3SQ11_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G154800 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.0e-70
Identity = 168/318 (52.83%), Postives = 209/318 (65.72%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN--------SDGILELEPMDSYNRLL 92
           M++TQFAMVEELAFLVK+NL  KHL+L+ME+V VN        SDGILELEPM+SYNRLL
Sbjct: 1   MSMTQFAMVEELAFLVKDNLSCKHLVLTMEEVLVNFLQDDHTSSDGILELEPMNSYNRLL 60

Query: 93  LHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEY-DEPQISTIPHQLLR 152
           LHRLA+IFGF+H SVGEG DRHL+LERCP++S+P ILVSDILW+Y DEPQ     HQ+LR
Sbjct: 61  LHRLAEIFGFAHESVGEGDDRHLILERCPDTSIPPILVSDILWKYDDEPQSLVTSHQILR 120

Query: 153 RKENSSVS-LKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMI 212
           R E SSVS   K+   +S EER+AAYL  RERIF M + E  EP + KPR  PVVARRMI
Sbjct: 121 RSEASSVSQTNKTSFSKSLEERKAAYLVARERIFSMKLEEVKEPGEQKPRSVPVVARRMI 180

Query: 213 AHALGKRINSSPEATSNHSKEQGSVANNAYVQA---NELKEPDSTVEVVNKTKLQPDQCV 272
           AHALG+RI         H+K Q  +A+++       +EL   D   EV N TK   +   
Sbjct: 181 AHALGQRI---------HTKNQSGLASDSINDGGLKDELNVQDKNSEVSNLTKDSEEILC 240

Query: 273 NSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSP-------KASCVDNEYLKREHLGAAK 331
             +N   + RN   S+A   N    +    + SP       +   V+ +Y+K+EHLGAAK
Sbjct: 241 LRRNPNNRIRNSSSSNASSHNKRNDQTPVHEESPLFSQDTTQGQTVNKDYMKKEHLGAAK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. TrEMBL
Match: V7BHN6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G119000g PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 3.4e-70
Identity = 168/320 (52.50%), Postives = 208/320 (65.00%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN--------SDGILELEPMDSYNRLL 92
           M++TQFAMVEELAFLVK+NLP KHL+L+ME+V VN        SDGILELEPM+SYNRLL
Sbjct: 1   MSMTQFAMVEELAFLVKDNLPCKHLVLTMEEVLVNFLQDDHTSSDGILELEPMNSYNRLL 60

Query: 93  LHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEY-DEPQISTIPHQLLR 152
           LHRLA+IFGF+H SVGEG DRHL+LERCP++S+P ILVSDILW+Y DEPQ     HQ+LR
Sbjct: 61  LHRLAEIFGFAHESVGEGEDRHLILERCPDTSIPPILVSDILWKYDDEPQSLVTSHQILR 120

Query: 153 RKENSSVS-LKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMI 212
           R E S VS   K+   +S EER+AAYL  RERIF + + E  EP + KPR  PVVA+RMI
Sbjct: 121 RSEASPVSQTNKASFSKSLEERKAAYLIARERIFSVKLEEVKEPGEQKPRSVPVVAQRMI 180

Query: 213 AHALGKRINSSPEATSNHSKEQGSVANNAYVQ---ANELKEPDSTVEVVNKTKLQPDQCV 272
           AHALG+RI         H+K Q  +A ++       +EL   D   EV N TK   +   
Sbjct: 181 AHALGQRI---------HTKNQNGLATDSIKDRGLKDELNAQDKNSEVSNLTKDSEEFLH 240

Query: 273 NSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSP-------KASCVDNEYLKREHLGAAK 332
             +N   + RN   S+A   N    +   DK  P       +   V+ +Y+K EHLGAAK
Sbjct: 241 LRRNSNSRIRNTSSSNASSYNKRNDQTPVDKELPLFSQDRKQGQSVNKDYMKMEHLGAAK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: gi|449470259|ref|XP_004152835.1| (PREDICTED: R3H domain-containing protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 437.2 bits (1123), Expect = 2.6e-119
Identity = 236/307 (76.87%), Postives = 254/307 (82.74%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN-------SDGILELEPMDSYNRLLL 92
           M + QFAMVEELAFLVK+NLPSKHLILSME+ F+N       SDGILEL+PMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFG  HVSVGEG +RHLVLER PESS+PSILVSDILWEYDEPQ+STIPHQLLRRK
Sbjct: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSS S  KS PQRS EEREAAYLAVRERIFM H+GED+EP KPKPRCDP VARRMIAHA
Sbjct: 121 ENSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LG+R+NS  E T+ H KEQG V NNAY+QA + K PDSTVE +NKT  + DQCVN KNE 
Sbjct: 181 LGQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNEL 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRK 332
            KN NP  S ARGS AA  KMK  KS PKAS VDNE+LKREHLGAAKRMFSQALGK  RK
Sbjct: 241 DKNCNPDVSLARGSTAA--KMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRK 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: gi|778667822|ref|XP_011648991.1| (PREDICTED: R3H domain-containing protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 436.8 bits (1122), Expect = 3.4e-119
Identity = 236/308 (76.62%), Postives = 254/308 (82.47%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN--------SDGILELEPMDSYNRLL 92
           M + QFAMVEELAFLVK+NLPSKHLILSME+ F+N        SDGILEL+PMDSYNRLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSSDGILELKPMDSYNRLL 60

Query: 93  LHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRR 152
           LHRLADIFG  HVSVGEG +RHLVLER PESS+PSILVSDILWEYDEPQ+STIPHQLLRR
Sbjct: 61  LHRLADIFGLGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRR 120

Query: 153 KENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAH 212
           KENSS S  KS PQRS EEREAAYLAVRERIFM H+GED+EP KPKPRCDP VARRMIAH
Sbjct: 121 KENSSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAH 180

Query: 213 ALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNE 272
           ALG+R+NS  E T+ H KEQG V NNAY+QA + K PDSTVE +NKT  + DQCVN KNE
Sbjct: 181 ALGQRVNSLSEDTNCHQKEQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNE 240

Query: 273 AGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSR 332
             KN NP  S ARGS AA  KMK  KS PKAS VDNE+LKREHLGAAKRMFSQALGK  R
Sbjct: 241 LDKNCNPDVSLARGSTAA--KMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCR 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: gi|659082547|ref|XP_008441899.1| (PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo])

HSP 1 Score: 431.4 bits (1108), Expect = 1.4e-117
Identity = 237/308 (76.95%), Postives = 256/308 (83.12%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN-------SDGILELEPMDSYNRLLL 92
           M + QFAMVEELAFLVK+NLPSKHLILSME+ F+N       SDGILEL+PMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSDGILELKPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFG  HVS GEG +RHLVLER PESS+PSILVSDILWEYDEPQ+STIPHQLLRRK
Sbjct: 61  HRLADIFGLGHVSAGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRK 120

Query: 153 ENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHA 212
           ENSS S  KS PQRS EERE AYLAVRERIFM HIGED+EP KPKPRCDP VARRMIAHA
Sbjct: 121 ENSSASSAKSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAHA 180

Query: 213 LGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEA 272
           LG+R+NS PE T+ H K QG VANNAY+QA + K P+STVE +NKT  Q DQC+N KNE+
Sbjct: 181 LGQRVNSFPEDTNCHRKVQG-VANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNES 240

Query: 273 GKNRNPIRSSARGSNAAAPKMKADKSSPKAS-CVDNEYLKREHLGAAKRMFSQALGKQSR 332
            KN NP  S ARGS AA  KMK DKSSPKAS  VDNE+LKREHLGAAKRMFSQALGK  R
Sbjct: 241 DKNCNPNVSLARGSTAA--KMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHCR 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: gi|659082545|ref|XP_008441898.1| (PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo])

HSP 1 Score: 431.0 bits (1107), Expect = 1.9e-117
Identity = 237/309 (76.70%), Postives = 256/309 (82.85%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN--------SDGILELEPMDSYNRLL 92
           M + QFAMVEELAFLVK+NLPSKHLILSME+ F+N        SDGILEL+PMDSYNRLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSSDGILELKPMDSYNRLL 60

Query: 93  LHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRR 152
           LHRLADIFG  HVS GEG +RHLVLER PESS+PSILVSDILWEYDEPQ+STIPHQLLRR
Sbjct: 61  LHRLADIFGLGHVSAGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRR 120

Query: 153 KENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAH 212
           KENSS S  KS PQRS EERE AYLAVRERIFM HIGED+EP KPKPRCDP VARRMIAH
Sbjct: 121 KENSSASSAKSSPQRSLEERETAYLAVRERIFMTHIGEDNEPLKPKPRCDPAVARRMIAH 180

Query: 213 ALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNE 272
           ALG+R+NS PE T+ H K QG VANNAY+QA + K P+STVE +NKT  Q DQC+N KNE
Sbjct: 181 ALGQRVNSFPEDTNCHRKVQG-VANNAYIQARDSKLPNSTVEAINKTISQSDQCMNLKNE 240

Query: 273 AGKNRNPIRSSARGSNAAAPKMKADKSSPKAS-CVDNEYLKREHLGAAKRMFSQALGKQS 332
           + KN NP  S ARGS AA  KMK DKSSPKAS  VDNE+LKREHLGAAKRMFSQALGK  
Sbjct: 241 SDKNCNPNVSLARGSTAA--KMKLDKSSPKASHDVDNEHLKREHLGAAKRMFSQALGKHC 300

[Close]

BLAST of Cp4.1LG07g07910 vs. NCBI nr
Match: gi|641823929|gb|KDO43297.1| (hypothetical protein CISIN_1g020450mg [Citrus sinensis])

HSP 1 Score: 280.0 bits (715), Expect = 5.3e-72
Identity = 166/312 (53.21%), Postives = 214/312 (68.59%), Query Frame = 1


Query: 33  MAITQFAMVEELAFLVKENLPSKHLILSMEDVFVN-------SDGILELEPMDSYNRLLL 92
           M+ TQFAMVEELAFLVK+NLPSKHL+LSME+  VN       +DG+LELEPMDSYNRLLL
Sbjct: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLL 60

Query: 93  HRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRK 152
           HRLADIFGF+H SVGEGVDRHL+LERC E+S+PSILVSDILW+Y EPQ  T  HQ+LRRK
Sbjct: 61  HRLADIFGFAHESVGEGVDRHLILERCSETSIPSILVSDILWQYGEPQSLTTSHQILRRK 120

Query: 153 ENSSVSLKKSPP-QRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAH 212
           E   V   +SP  + S  EREAAYLA RERIF M     +EP + KPR  P+VA+RMIAH
Sbjct: 121 EAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAH 180

Query: 213 ALGKRINSSPEATSNHSK-EQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKN 272
           ALG+++ S  + T+   +     +AN   ++ ++   P++++E   +T L P Q VNS +
Sbjct: 181 ALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLD 240

Query: 273 EAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDN---------EYLKREHLGAAKRM 327
           ++ K +     S++ S+  AP+  ++KSS   S   N         EYLK E LGAAKR+
Sbjct: 241 KSNKKKGKSTVSSQ-SDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRL 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g07910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g07910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH15_CUCSA	1.8e-119	76.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074070 PE=4 SV=1	[more]
A0A067DWA9_CITSI	3.7e-72	53.21	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020450mg PE=4 SV=1	[more]
A0A0L9THK9_PHAAN	2.0e-70	52.83	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s005800 PE=4 SV=1	[more]
A0A0S3SQ11_PHAAN	2.0e-70	52.83	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G154800 PE=...	[more]
V7BHN6_PHAVU	3.4e-70	52.50	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G119000g PE=4 SV=1	[more]

BLAST of Cp4.1LG07g07910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g07910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470259\|ref\|XP_004152835.1\|	2.6e-119	76.87	PREDICTED: R3H domain-containing protein 1 isoform X2 [Cucumis sativus]	[more]
gi\|778667822\|ref\|XP_011648991.1\|	3.4e-119	76.62	PREDICTED: R3H domain-containing protein 1 isoform X1 [Cucumis sativus]	[more]
gi\|659082547\|ref\|XP_008441899.1\|	1.4e-117	76.95	PREDICTED: uncharacterized protein LOC103485903 isoform X2 [Cucumis melo]	[more]
gi\|659082545\|ref\|XP_008441898.1\|	1.9e-117	76.70	PREDICTED: uncharacterized protein LOC103485903 isoform X1 [Cucumis melo]	[more]
gi\|641823929\|gb\|KDO43297.1\|	5.3e-72	53.21	hypothetical protein CISIN_1g020450mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024771	SUZ
IPR001374	R3H_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g07910.1	Cp4.1LG07g07910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001374	R3H domain	GENE3D	G3DSA:3.30.1370.50		coord: 61..118 score: 9.6
IPR001374	R3H domain	PFAM	PF01424	R3H	coord: 65..110 score: 2.3
IPR001374	R3H domain	SMART	SM00393	R3H_4	coord: 34..112 score: 3.
IPR001374	R3H domain	PROFILE	PS51061	R3H	coord: 48..113 score: 12
IPR001374	R3H domain	unknown	SSF82708	R3H domain	coord: 47..145 score: 7.85
IPR024771	SUZ domain	PFAM	PF12752	SUZ	coord: 142..177 score: 2.
IPR024771	SUZ domain	PROFILE	PS51673	SUZ	coord: 116..180 score: 9
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 33..248 score: 6.7
None	No IPR available	PANTHER	PTHR15672:SF16	SUBFAMILY NOT NAMED	coord: 33..248 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g07910	Cucsa.178680	Cucumber (Gy14) v1	cgycpeB0492
Cp4.1LG07g07910	CmaCh12G009480	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g07910	CmoCh12G009480	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g07910	Cla005742	Watermelon (97103) v1	cpewmB814
Cp4.1LG07g07910	Csa2G074070	Cucumber (Chinese Long) v2	cpecuB811
Cp4.1LG07g07910	MELO3C008758	Melon (DHL92) v3.5.1	cpemeB777
Cp4.1LG07g07910	ClCG11G010990	Watermelon (Charleston Gray)	cpewcgB723
Cp4.1LG07g07910	CSPI02G07060	Wild cucumber (PI 183967)	cpecpiB812
Cp4.1LG07g07910	Lsi11G008490	Bottle gourd (USVL1VR-Ls)	cpelsiB654
Cp4.1LG07g07910	MELO3C008758.2	Melon (DHL92) v3.6.1	cpemedB913
Cp4.1LG07g07910	CsaV3_2G009500	Cucumber (Chinese Long) v3	cpecucB1005
Cp4.1LG07g07910	CsGy2G007270	Cucumber (Gy14) v2	cgybcpeB261
Cp4.1LG07g07910	Carg22657	Silver-seed gourd	carcpeB0007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g07910	Cucurbita pepo (Zucchini)	cpecpeB142
Cp4.1LG07g07910	Cucurbita maxima (Rimu)	cmacpeB790
Cp4.1LG07g07910	Cucurbita moschata (Rifu)	cmocpeB743
Cp4.1LG07g07910	Silver-seed gourd	carcpeB0238
Cp4.1LG07g07910	Wax gourd	cpewgoB1016