Lsi10G009860 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_73
Location	chr10 : 14219270 .. 14220412 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGTAATTTTCCATATATATGTGTAAGTTATGTATTAATGATTTAAAAATATATTTATAACGAAAGCTCTAAATTTTTGTGGAGAAAGTAATGAAAGGTCTAATTTAATTTAATTTAAAAAAAAAAAATTGATACACAATTAGATTGCCCCTTCTGTTGGCCCCTTATGTTGCACTCTGGAACGGGAATAAAACTGCAAATTTAAGATCGAAGAAGCTTTCAAAACTGAGTGAGAATGAAAGCTTCAGAACTTTCAACTCCAACGAATGCCGCAGAATGCAAAGACAGGCCCCAAAAACCGCCGTTCAGGCCTGCTAAAGACGACACCAAGCTCGTTCTCCAAGATCCGGTTCTCTCTCTCCCAAATTAACTCTTACTACTAACTCTTTCCTTTTAGTAATTTCATTCTTGAATTTTGTTGTACCACTACCAATGTGCACCAACTGAAGATTGTTCCCATTTCTTTCTTTTGCTATAGATACGGAGGTCAGATCCAATTGAAACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCATTTCTCTGTTCCGAAATCAAAGAACTCTTCTCAAATGGGGTGAAAGCAATTGTTGATTTCTTATTTTGGTTTCATGTCCGTTCTTGTTGGTCCTTGCCATGAATGATCACGTTCTGCAATATCGAACAATTAATGCAAATAGAAGTCCCTTTTTTTTTCTACGCATTATGGGTTTGTGCTTGAGACTGAATAGAATTCCCCACTATCCAGCAAATTTAGCTTCCAAGTTTACATATTACTTTTTACTGTAATGGTAGAAAAGAATAGTGATCCTCATTATCCAGCAATGAATTGATCGTGCGTGCCAAGTGTTCGACGAAATGCTTAAGTGGGAAGTAAGCTTTGGGATGTCTTTTTTTCTTTCTTTCTTTTTGTTTCCTTTTCATCAGACGCCTACAAGTGTTTTGCCTCTGTCTGTTCAGACTGATGAAAGACAACCGTGAGAGGATTTTGGATCATTCAGTGCTGATTCTAATCTCCATAGCCAAATGAGAGAAGATACAGGTATGTCCACGCTATCTATATATCCTCTCGCTTCACTCGACTTCCAAAATGCAAAATTTATTGGGTCTGTACTTGTACACGGATGAAACTCATTTACTTTG

mRNA sequence

ATAGTAATTTTCCATATATATGTGTAAGTTATGTATTAATGATTTAAAAATATATTTATAACGAAAGCTCTAAATTTTTGTGGAGAAAGTAATGAAAGGTCTAATTTAATTTAATTTAAAAAAAAAAAATTGATACACAATTAGATTGCCCCTTCTGTTGGCCCCTTATGTTGCACTCTGGAACGGGAATAAAACTGCAAATTTAAGATCGAAGAAGCTTTCAAAACTGAGTGAGAATGAAAGCTTCAGAACTTTCAACTCCAACGAATGCCGCAGAATGCAAAGACAGGCCCCAAAAACCGCCGTTCAGGCCTGCTAAAGACGACACCAAGCTCGTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAAACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCATTTCTCTGTTCCGAAATCAAAGAACTCTTCTCAAATGGGGTGAAAGCAATTGTTGATTTCTTATTTTGGTTTCATGTCCGTTCTTGTTGGTCCTTGCCATGAATGATCACGTTCTGCAATATCGAACAATTAATGCAAATAGAAGTCCCTTTTTTTTTCTACGCATTATGGGTTTGTGCTTGAGACTGAATAGAATTCCCCACTATCCAGCAAATTTAGCTTCCAAGTTTACATATTACTTTTTACTGTAATGGTAGAAAAGAATAGTGATCCTCATTATCCAGCAATGAATTGATCGTGCGTGCCAAGTGTTCGACGAAATGCTTAAGTGGGAAACTGATGAAAGACAACCGTGAGAGGATTTTGGATCATTCAGTGCTGATTCTAATCTCCATAGCCAAATGAGAGAAGATACAGGTATGTCCACGCTATCTATATATCCTCTCGCTTCACTCGACTTCCAAAATGCAAAATTTATTGGGTCTGTACTTGTACACGGATGAAACTCATTTACTTTG

Coding sequence (CDS)

ATGAAAGCTTCAGAACTTTCAACTCCAACGAATGCCGCAGAATGCAAAGACAGGCCCCAAAAACCGCCGTTCAGGCCTGCTAAAGACGACACCAAGCTCGTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAAACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCATTTCTCTGTTCCGAAATCAAAGAACTCTTCTCAAATGGGGTGA

Protein sequence

MKASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFSVPKSKNSSQMG

Homology

[Close]

BLAST of Lsi10G009860 vs. TrEMBL
Match: A0A0A0KWV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280670 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-28
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1  MKASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFS 60
          MKASELS+P+N  ECK+RPQKPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPFHFS
Sbjct: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60

Query: 61 VPKSKNSSQMG 72
          +PKSKN SQMG
Sbjct: 61 LPKSKNPSQMG 71

[Close]

BLAST of Lsi10G009860 vs. TrEMBL
Match: W9QLE6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013727 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-11
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1  MKASELSTP--TNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFH 60
          MKASE S     N  + +++P KP FRPAKDDTK +LQDPI RSDPIETEEAVLR PPF 
Sbjct: 1  MKASESSVKPSNNYPQNREKPTKPSFRPAKDDTKPILQDPILRSDPIETEEAVLRLPPFP 60

[Close]

BLAST of Lsi10G009860 vs. TrEMBL
Match: K4AV14_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 1  MKASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFS 60
          M+  E S      E K +  KPPFRPAKDDTK +LQDPI RSDPIETEEA+LR PPF  S
Sbjct: 1  MEGGEESNKNGKGEVK-KITKPPFRPAKDDTKPLLQDPILRSDPIETEEALLRLPPFPIS 60

Query: 61 VPKSK 66
           PKS+
Sbjct: 61 KPKSQ 64

[Close]

BLAST of Lsi10G009860 vs. TrEMBL
Match: A0A0L9V5H2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g105000 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-10
Identity = 44/63 (69.84%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 2  KASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFSV 61
          K SE ST  N+     +P KPPF+PAKDDTK VLQDPI RSDPIETEEAVLR PP  FSV
Sbjct: 11 KNSESSTKPNSNNNSPKP-KPPFKPAKDDTKPVLQDPILRSDPIETEEAVLRLPP--FSV 70

Query: 62 PKS 65
          P S
Sbjct: 71 PTS 70

[Close]

BLAST of Lsi10G009860 vs. TrEMBL
Match: A0A0V0GDT1_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 3  ASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFSVP 62
          +S  +T  N      +  KPPFRPAKDDTK +LQDPI RSDPIETEEA+LR PPF  S P
Sbjct: 2  SSNSNTNNNGKREVKKMTKPPFRPAKDDTKPLLQDPILRSDPIETEEALLRLPPFPISKP 61

Query: 63 KSK 66
          KS+
Sbjct: 62 KSQ 64

[Close]

BLAST of Lsi10G009860 vs. TAIR10
Match: AT2G20480.1 (AT2G20480.1 unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 7.7e-11
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 2  KASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 58
          K++E     NA     + QKPPFRPA DDTK VLQDPI RSDP+ETEEAVLR P F
Sbjct: 3  KSTETPARPNATV---KTQKPPFRPAVDDTKPVLQDPILRSDPMETEEAVLRLPSF 55

[Close]

BLAST of Lsi10G009860 vs. NCBI nr
Match: gi|659097733|ref|XP_008449784.1| (PREDICTED: uncharacterized protein LOC103491569 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-28
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1  MKASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFS 60
          M+ASELSTP+N  ECKDRPQKPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPFHFS
Sbjct: 1  MQASELSTPSNTLECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60

Query: 61 VPKSKNSSQMG 72
          +PKSKN SQMG
Sbjct: 61 LPKSKNPSQMG 71

[Close]

BLAST of Lsi10G009860 vs. NCBI nr
Match: gi|700198932|gb|KGN54090.1| (hypothetical protein Csa_4G280670 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1  MKASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFS 60
          MKASELS+P+N  ECK+RPQKPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPFHFS
Sbjct: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60

Query: 61 VPKSKNSSQMG 72
          +PKSKN SQMG
Sbjct: 61 LPKSKNPSQMG 71

[Close]

BLAST of Lsi10G009860 vs. NCBI nr
Match: gi|720005029|ref|XP_010257524.1| (PREDICTED: uncharacterized protein LOC104597593 [Nelumbo nucifera])

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-12
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 1  MKASELSTPTNAAECK-----DRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPP 58
          MK SE+   T+ +E +     D+PQKPPFRPAKDDTK +LQDPI RSDPIETEEAVLR P
Sbjct: 1  MKGSEILIKTSESEGETKSFSDKPQKPPFRPAKDDTKPILQDPILRSDPIETEEAVLRLP 60

[Close]

BLAST of Lsi10G009860 vs. NCBI nr
Match: gi|703077872|ref|XP_010090705.1| (hypothetical protein L484_013727 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1  MKASELSTP--TNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFH 60
          MKASE S     N  + +++P KP FRPAKDDTK +LQDPI RSDPIETEEAVLR PPF 
Sbjct: 1  MKASESSVKPSNNYPQNREKPTKPSFRPAKDDTKPILQDPILRSDPIETEEAVLRLPPFP 60

[Close]

BLAST of Lsi10G009860 vs. NCBI nr
Match: gi|969999678|ref|XP_015084185.1| (PREDICTED: uncharacterized protein LOC107027563 [Solanum pennellii])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 1  MKASELSTPTNAAECKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFHFS 60
          M+  E S     +E K +  KPPFRPAKDDTK +LQDPI RSDPIETEEA+LR PPF  S
Sbjct: 1  MEGGEESNKNGKSEVK-KITKPPFRPAKDDTKPLLQDPILRSDPIETEEALLRLPPFPIS 60

Query: 61 VPKSK 66
           PKS+
Sbjct: 61 KPKSQ 64

The following BLAST results are available for this feature:

BLAST of Lsi10G009860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G009860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWV8_CUCSA	1.6e-28	88.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280670 PE=4 SV=1	[more]
W9QLE6_9ROSA	2.9e-11	66.13	Uncharacterized protein OS=Morus notabilis GN=L484_013727 PE=4 SV=1	[more]
K4AV14_SOLLC	1.1e-10	63.08	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0L9V5H2_PHAAN	1.5e-10	69.84	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g105000 PE=4 SV=1	[more]
A0A0V0GDT1_SOLCH	1.9e-10	61.90	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Lsi10G009860 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20480.1	7.7e-11	64.29	unknown protein	[more]

BLAST of Lsi10G009860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097733\|ref\|XP_008449784.1\|	1.0e-28	90.14	PREDICTED: uncharacterized protein LOC103491569 [Cucumis melo]	[more]
gi\|700198932\|gb\|KGN54090.1\|	2.2e-28	88.73	hypothetical protein Csa_4G280670 [Cucumis sativus]	[more]
gi\|720005029\|ref\|XP_010257524.1\|	6.5e-12	67.74	PREDICTED: uncharacterized protein LOC104597593 [Nelumbo nucifera]	[more]
gi\|703077872\|ref\|XP_010090705.1\|	4.2e-11	66.13	hypothetical protein L484_013727 [Morus notabilis]	[more]
gi\|969999678\|ref\|XP_015084185.1\|	1.2e-10	63.08	PREDICTED: uncharacterized protein LOC107027563 [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009860.1	Lsi10G009860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37207	FAMILY NOT NAMED	coord: 17..69 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G009860	Csa4G280670	Cucumber (Chinese Long) v2	culsiB246
Lsi10G009860	CSPI04G13180	Wild cucumber (PI 183967)	cpilsiB245
Lsi10G009860	Cucsa.153340	Cucumber (Gy14) v1	cgylsiB245
Lsi10G009860	CmaCh02G012110	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G009860	CmoCh02G012450	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G009860	Cla003182	Watermelon (97103) v1	lsiwmB078
Lsi10G009860	MELO3C014663	Melon (DHL92) v3.5.1	lsimeB072
Lsi10G009860	ClCG02G023850	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G009860	Cla97C02G050000	Watermelon (97103) v2	lsiwmbB052
Lsi10G009860	Bhi10G000329	Wax gourd	lsiwgoB079
Lsi10G009860	Cp4.1LG05g05230	Cucurbita pepo (Zucchini)	cpelsiB598
Lsi10G009860	CsGy4G012750	Cucumber (Gy14) v2	cgyblsiB232
Lsi10G009860	Carg02746	Silver-seed gourd	carlsiB838
Lsi10G009860	CsaV3_4G023520	Cucumber (Chinese Long) v3	cuclsiB269

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G009860	Silver-seed gourd	carlsiB471
Lsi10G009860	Cucurbita maxima (Rimu)	cmalsiB500
Lsi10G009860	Cucurbita moschata (Rifu)	cmolsiB484
Lsi10G009860	Cucurbita pepo (Zucchini)	cpelsiB227
Lsi10G009860	Wild cucumber (PI 183967)	cpilsiB503
Lsi10G009860	Melon (DHL92) v3.5.1	lsimeB068
Lsi10G009860	Melon (DHL92) v3.6.1	lsimedB074