Cp4.1LG05g05230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g05230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaA09g56030D protein
LocationCp4.1LG05 : 3123607 .. 3124835 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGGGTAAAAATGTAAAATAAAATAAAAGTATAAATATTTTTGGTCACTAAAAAATGGTTATAAAACATTAAGATGAAATAATAAAAAGGAATTTTAAAATTTAAACCTATTTATTTATTATCTCCGACGAAGAAGAAATTTTGGAATCGGCCATTGAACTGCAAATTTCTGATCGGAGCACCTTTCGAAGCTTCAACCAGTGACGATGAGAGCTTCAGAGCTTTCAACTCCAACCAATCCGACGACTACTGTAGAATGCAAGGACAGGCCCCGTAAACCGCCGTTCAGGCCTGCTAAAGATGATACCAAACTTGTTCTCCAAGATCCGGTTCTCTCCCTTTCTCCCAGATTAATTCTTACTACTAATTCTTTCATTCTGGTTTGTTCTTGAATTTTGTTGTGTGAATGTGCACGAATTGAAGATTGTTCCTGTTTCTTTTGCCGCCTCTATTGTCTTTTGTTGTAGATACGGAGGTCAGATCCAATTGAGACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCAATTCTCTGTTTCGGAATCAAAGAACTCTTCTAAAATGGGATGAAAATGTTGTTGTTGTTGTTTTTTTTTTTTTCTTTAAGATTCTGTCTGTTCTTGGTTCATGCTGTGATCACGTGGTGGAATTTCGAACAATTAATGAAAATAGAAAGTCCAGTTTTTTCTACTCGAGACCGAATAGTAATTCCACTATCCAGTTGAATCAAATTTAGCTTCCAAGTCATATAATTTATTACTGTGATGGTAGAAAACCATAACGACACGCATTAGTCATCAATCAATTGATTGTGCGTAGCAGTTGTTCGACGAAATGCTTAAGTGGGAAGTAAGCTTTGAGACGACCAACCACTTTGCTTTTTGTTTGTCATCAGACGCCTGTGAGTGCTGATTTGCTCTTGTCTGTTCGGGCTGGCTGATGAGGGCAACCGCAGGAGCCATTTGGACCATTCAGAGCCGATTCCAATCTCCATAACCAGATTGGTGAACATACAGGTACGCCCACCATCTATATATATATATATATATATATCCTCCTACTTTACTTGGTATTCAAAATACAAAGTTTAGAGCGTTTGTTCTTGTAATGAAATTCATATACCTTGGAATGGAAAAAGTTGCTCATGGATGTTAGGCATGAAACTATGTAGAATGCTGGTCTAAAAGAATAATCTATGCCTAGGAAACTATGTAGCATAGGTATA

mRNA sequence

ATGGGAGGGCACCTTTCGAAGCTTCAACCAGTGACGATGAGAGCTTCAGAGCTTTCAACTCCAACCAATCCGACGACTACTGTAGAATGCAAGGACAGGCCCCGTAAACCGCCGTTCAGGCCTGCTAAAGATGATACCAAACTTGTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAGACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCAATTCTCTGTTTCGGAATCAAAGAACTCTTCTAAAATGGGATGAAAATGTTGTTGTTGTTGTTTTTTTTTTTTTCTTTAAGATTCTGTCTGTTCTTGGTTCATGCTGTGATCACGTGGTGGAATTTCGAACAATTAATGAAAATAGAAAGTCCAGTTTTTTCTACTCGAGACCGAATAGTAATTCCACTATCCAGTTGAATCAAATTTAGCTTCCAAGTCATATAATTTATTACTGTGATGGTAGAAAACCATAACGACACGCATTAGTCATCAATCAATTGATTGTGCGTAGCAGTTGTTCGACGAAATGCTTAAGTGGGAAGTAAGCTTTGAGACGACCAACCACTTTGCTTTTTGTTTGTCATCAGACGCCTGTGAGTGCTGATTTGCTCTTGTCTGTTCGGGCTGGCTGATGAGGGCAACCGCAGGAGCCATTTGGACCATTCAGAGCCGATTCCAATCTCCATAACCAGATTGGTGAACATACAGGTACGCCCACCATCTATATATATATATATATATATATCCTCCTACTTTACTTGGTATTCAAAATACAAAGTTTAGAGCGTTTGTTCTTGTAATGAAATTCATATACCTTGGAATGGAAAAAGTTGCTCATGGATGTTAGGCATGAAACTATGTAGAATGCTGGTCTAAAAGAATAATCTATGCCTAGGAAACTATGTAGCATAGGTATA

Coding sequence (CDS)

ATGGGAGGGCACCTTTCGAAGCTTCAACCAGTGACGATGAGAGCTTCAGAGCTTTCAACTCCAACCAATCCGACGACTACTGTAGAATGCAAGGACAGGCCCCGTAAACCGCCGTTCAGGCCTGCTAAAGATGATACCAAACTTGTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAGACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCAATTCTCTGTTTCGGAATCAAAGAACTCTTCTAAAATGGGATGA

Protein sequence

MGGHLSKLQPVTMRASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFQFSVSESKNSSKMG
Homology
[Close]
BLAST of Cp4.1LG05g05230 vs. TrEMBL
Match: A0A0A0KWV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280670 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-24
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 13 MRASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 72
          M+ASELS+P+N   TVECK+RP+KPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MKASELSSPSN---TVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60

Query: 73 QFSVSESKNSSKMG 87
           FS+ +SKN S+MG
Sbjct: 61 HFSLPKSKNPSQMG 71

[Close]
BLAST of Cp4.1LG05g05230 vs. TrEMBL
Match: W9QLE6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013727 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-10
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 13 MRASELST-PTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPP 72
          M+ASE S  P+N     + +++P KP FRPAKDDTK +LQDPI RSDPIETEEAVLR PP
Sbjct: 1  MKASESSVKPSN--NYPQNREKPTKPSFRPAKDDTKPILQDPILRSDPIETEEAVLRLPP 60

Query: 73 FQFSVSESKNS 83
          F F+ + +  S
Sbjct: 61 FPFARTTNPKS 69

[Close]
BLAST of Cp4.1LG05g05230 vs. TrEMBL
Match: A0A0B2Q2E8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024994 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-10
Identity = 42/66 (63.64%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 14 RASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFQ 73
          R SE ST  N  +        RKPPF+PAKDDTK VLQDPI RSDPIETEEAVLR PPF+
Sbjct: 5  RCSESSTKPNNNSP------KRKPPFKPAKDDTKPVLQDPILRSDPIETEEAVLRLPPFK 64

Query: 74 FSVSES 80
             S S
Sbjct: 65 IPTSTS 64

[Close]
BLAST of Cp4.1LG05g05230 vs. TrEMBL
Match: K7MT34_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G180600 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-10
Identity = 42/66 (63.64%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 14 RASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFQ 73
          R SE ST  N  +        RKPPF+PAKDDTK VLQDPI RSDPIETEEAVLR PPF+
Sbjct: 5  RCSESSTKPNNNSP------KRKPPFKPAKDDTKPVLQDPILRSDPIETEEAVLRLPPFK 64

Query: 74 FSVSES 80
             S S
Sbjct: 65 IPTSTS 64

[Close]
BLAST of Cp4.1LG05g05230 vs. TrEMBL
Match: A0A067LAT7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19195 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-10
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 13 MRASELSTPTNPTTTVECKD----RPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLR 72
          M+ SELS+P  PT T++  +    +P+KP FRPA+DDTK  LQDPI RSDPIETEEAVLR
Sbjct: 1  MKGSELSSP--PTITIKTNNNYVGKPQKPYFRPAQDDTKPPLQDPILRSDPIETEEAVLR 60

[Close]
BLAST of Cp4.1LG05g05230 vs. TAIR10
Match: AT2G20480.1 (AT2G20480.1 unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-11
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 20 TPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 73
          TP  P  TV    + +KPPFRPA DDTK VLQDPI RSDP+ETEEAVLR P F
Sbjct: 7  TPARPNATV----KTQKPPFRPAVDDTKPVLQDPILRSDPMETEEAVLRLPSF 55

[Close]
BLAST of Cp4.1LG05g05230 vs. NCBI nr
Match: gi|659097733|ref|XP_008449784.1| (PREDICTED: uncharacterized protein LOC103491569 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-24
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 13 MRASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 72
          M+ASELSTP+N   T+ECKDRP+KPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MQASELSTPSN---TLECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60

Query: 73 QFSVSESKNSSKMG 87
           FS+ +SKN S+MG
Sbjct: 61 HFSLPKSKNPSQMG 71

[Close]
BLAST of Cp4.1LG05g05230 vs. NCBI nr
Match: gi|700198932|gb|KGN54090.1| (hypothetical protein Csa_4G280670 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 9.0e-24
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 13 MRASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 72
          M+ASELS+P+N   TVECK+RP+KPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MKASELSSPSN---TVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60

Query: 73 QFSVSESKNSSKMG 87
           FS+ +SKN S+MG
Sbjct: 61 HFSLPKSKNPSQMG 71

[Close]
BLAST of Cp4.1LG05g05230 vs. NCBI nr
Match: gi|720005029|ref|XP_010257524.1| (PREDICTED: uncharacterized protein LOC104597593 [Nelumbo nucifera])

HSP 1 Score: 74.7 bits (182), Expect = 8.7e-11
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 13 MRASELSTPTNPTT--TVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPP 72
          M+ SE+   T+ +   T    D+P+KPPFRPAKDDTK +LQDPI RSDPIETEEAVLR P
Sbjct: 1  MKGSEILIKTSESEGETKSFSDKPQKPPFRPAKDDTKPILQDPILRSDPIETEEAVLRLP 60

[Close]
BLAST of Cp4.1LG05g05230 vs. NCBI nr
Match: gi|703077872|ref|XP_010090705.1| (hypothetical protein L484_013727 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-10
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 13 MRASELST-PTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPP 72
          M+ASE S  P+N     + +++P KP FRPAKDDTK +LQDPI RSDPIETEEAVLR PP
Sbjct: 1  MKASESSVKPSN--NYPQNREKPTKPSFRPAKDDTKPILQDPILRSDPIETEEAVLRLPP 60

Query: 73 FQFSVSESKNS 83
          F F+ + +  S
Sbjct: 61 FPFARTTNPKS 69

[Close]
BLAST of Cp4.1LG05g05230 vs. NCBI nr
Match: gi|947050398|gb|KRG99926.1| (hypothetical protein GLYMA_18G180600 [Glycine max])

HSP 1 Score: 71.6 bits (174), Expect = 7.4e-10
Identity = 42/66 (63.64%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 14 RASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFQ 73
          R SE ST  N  +        RKPPF+PAKDDTK VLQDPI RSDPIETEEAVLR PPF+
Sbjct: 5  RCSESSTKPNNNSP------KRKPPFKPAKDDTKPVLQDPILRSDPIETEEAVLRLPPFK 64

Query: 74 FSVSES 80
             S S
Sbjct: 65 IPTSTS 64

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g05230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g05230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWV8_CUCSA6.3e-2479.73Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280670 PE=4 SV=1[more]
W9QLE6_9ROSA3.0e-1059.15Uncharacterized protein OS=Morus notabilis GN=L484_013727 PE=4 SV=1[more]
A0A0B2Q2E8_GLYSO5.2e-1063.64Uncharacterized protein OS=Glycine soja GN=glysoja_024994 PE=4 SV=1[more]
K7MT34_SOYBN5.2e-1063.64Uncharacterized protein OS=Glycine max GN=GLYMA_18G180600 PE=4 SV=1[more]
A0A067LAT7_JATCU5.2e-1064.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19195 PE=4 SV=1[more]
BLAST of Cp4.1LG05g05230 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20480.12.4e-1167.92 unknown protein[more]
BLAST of Cp4.1LG05g05230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097733|ref|XP_008449784.1|3.1e-2481.08PREDICTED: uncharacterized protein LOC103491569 [Cucumis melo][more]
gi|700198932|gb|KGN54090.1|9.0e-2479.73hypothetical protein Csa_4G280670 [Cucumis sativus][more]
gi|720005029|ref|XP_010257524.1|8.7e-1164.52PREDICTED: uncharacterized protein LOC104597593 [Nelumbo nucifera][more]
gi|703077872|ref|XP_010090705.1|4.3e-1059.15hypothetical protein L484_013727 [Morus notabilis][more]
gi|947050398|gb|KRG99926.1|7.4e-1063.64hypothetical protein GLYMA_18G180600 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g05230.1Cp4.1LG05g05230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37207FAMILY NOT NAMEDcoord: 2..84
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g05230Cucsa.153340Cucumber (Gy14) v1cgycpeB0410
Cp4.1LG05g05230CmaCh02G012110Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g05230CmoCh02G012450Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g05230Cla003182Watermelon (97103) v1cpewmB723
Cp4.1LG05g05230Csa4G280670Cucumber (Chinese Long) v2cpecuB728
Cp4.1LG05g05230MELO3C014663Melon (DHL92) v3.5.1cpemeB696
Cp4.1LG05g05230ClCG02G023850Watermelon (Charleston Gray)cpewcgB644
Cp4.1LG05g05230CSPI04G13180Wild cucumber (PI 183967)cpecpiB730
Cp4.1LG05g05230Lsi10G009860Bottle gourd (USVL1VR-Ls)cpelsiB598
Cp4.1LG05g05230CsaV3_4G023520Cucumber (Chinese Long) v3cpecucB0908
Cp4.1LG05g05230Bhi10G000329Wax gourdcpewgoB0944
Cp4.1LG05g05230CsGy4G012750Cucumber (Gy14) v2cgybcpeB561
Cp4.1LG05g05230Carg02746Silver-seed gourdcarcpeB1283
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g05230Melon (DHL92) v3.6.1cpemedB813
Cp4.1LG05g05230Melon (DHL92) v3.6.1cpemedB829
Cp4.1LG05g05230Silver-seed gourdcarcpeB0635
Cp4.1LG05g05230Silver-seed gourdcarcpeB0658
Cp4.1LG05g05230Silver-seed gourdcarcpeB0741
Cp4.1LG05g05230Cucumber (Chinese Long) v3cpecucB0877
Cp4.1LG05g05230Cucumber (Chinese Long) v3cpecucB0948
Cp4.1LG05g05230Wax gourdcpewgoB0970
Cp4.1LG05g05230Cucurbita pepo (Zucchini)cpecpeB310
Cp4.1LG05g05230Cucurbita pepo (Zucchini)cpecpeB341
Cp4.1LG05g05230Cucurbita pepo (Zucchini)cpecpeB369
Cp4.1LG05g05230Cucumber (Gy14) v1cgycpeB0386
Cp4.1LG05g05230Cucurbita maxima (Rimu)cmacpeB098
Cp4.1LG05g05230Cucurbita maxima (Rimu)cmacpeB586
Cp4.1LG05g05230Cucurbita moschata (Rifu)cmocpeB074
Cp4.1LG05g05230Cucurbita moschata (Rifu)cmocpeB535
Cp4.1LG05g05230Wild cucumber (PI 183967)cpecpiB705
Cp4.1LG05g05230Cucumber (Chinese Long) v2cpecuB703
Cp4.1LG05g05230Cucumber (Chinese Long) v2cpecuB768
Cp4.1LG05g05230Cucumber (Gy14) v2cgybcpeB137
Cp4.1LG05g05230Cucumber (Gy14) v2cgybcpeB975