Lsi10G009140 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Antitermination NusB domain-containing protein
Location	chr10 : 13623254 .. 13626653 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCATGATTTCTAGATATCTCCTGAAAATGTGACTTAACTTAGCATGCCTAGTTTTCATTCTTGCTCTTTGTTTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTCCCCCACGTAGAAGATTCCATGCCACACCTCTGCCCTCAAGCCTCGCTTCAGTCTTCTACTTCTTTTTCTGAAAATAGTGTGGTTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAACACCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTAAGATCCACCATTTCATTTTCACTTTTTTTTCCCCCCTAAACATCTGAATATCTCCTCTCTACCTTTTTACCTATTCACAAAGTTGGCCCACTCACCAAGAATATACTCTCAGAATTTGTTTAATTTCTAGACTTGTAATCAATTCTAATTCTACTAGATTATTCAGTCACAAGTCAACTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGGGGTAAAAAAGATTTTGTTGGGGAAATAGATGTCACATATTTAACTCAAATATAAAACCAACGTCTTGCTTTATTTGTCTGTACAATTCAAAATCGGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGCCCGCCAGTTACTGTGGAAATAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGATGAAAAAGATTCTACAATTGGTAAACAATTACGTGACCTTCGTATATATATTATTTCTTCTTCTTAATTCACTCATTACTTTAGAATTGAGCCCCGAAAGAGACAAAACTATTCATCGAAAAGATGAACCTCTCACTAATGCTCAAAGGATACAAACTCCTAAAAGAGTAAAAAGGAAAAAGAAAAGCAAAGAAATATAAAGATTCCACAAACCATAACAAATGATATACTTAAAAAACTTAACAAAAAACTAATACATTAACATCAAGCATGGGTATGAACGTGGAGTTGCCCATAGAAGTTGGAGCAGATGTCCAAAAGCTCCAACAAGTGTTGTTGCAAAATCGCAATCTTCTGTTTGGGTAACTTTATTTGGCAAAGAAGCTTCTCCTTCGAAATTTAAACCAATTCTTCATCAAGATGAGCTATAATAAAACTCAAAGAGAGCCCTTGAAGATAAAATTCTCACATCCTCGAAAGAGATATAGAGAGAGAGGAGAAATGCCAAAAAAACTCTTGAACTTCCAAAAAAAAAAAAAAAGGGCAGTATCTAATGAAAGGATCAAGAGGACTACTAGTTCCAAGGCTCCCAAATGTCACTATGGATCAATGCACAAGGGTTGGAAGATTTGAATAAATTTCTGGTATGTTTGGAGAGTTGACACATTTTGCACAGAAACTGACTAGATTTTTTTTATTAATGAATAACCGAGGAAACAATTTTTTCAGGATACGAAAAATTTGGACGATCAAGTCGAAAGTGCCATAACATGACTTTGCTTTAACAAGACAGTGATTTAGAACTGGAAGTAGACTCGGGAATAAGACTGCTAGAATTGAAAGAAGACTCACAACTAAGACTGGAAGACGATTTTGAAGGATTAACTGCAAATTTGACGAAGGAACCAAGGGTTCTACCAAAAGCAAAATTCAGAGGCTAAAATGTAACATTTGAAAATTTAGAGACCAAAATGCAACCGAACCCAAAACTGAGGGACTAAAATTATATTTTTCCCATGTTTTTATTATAGTTGTAAATGTAGTATTGTCTAGCCCCAGAGTCCGATTTTATTGCATTTAGTATTAAAGTTATGTTTTTCTGCATGACCATATCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGCTTGTCTACAGCAAACTGATCTTACGGTAAATGTGGTTTATATTCCCCTGCCTTTGGCAGAGGAAGATAAGATGAAAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTTACTTCACGCATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGTCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGTAGAAAGCTTGTTTCTTTTTGCTATTTTATTTTCTGATTTTCTCCTTTTCTAGTTGGGAATAATGTTGAACCATTTATCATGTTCGTGTGGTTATAATACTCCTCGTGAACTGATCTTTGCCTCATAATCATAGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAAGCTTTATACTATGGTGGCCACTGGTGAGGATGGAACCACAAACATATGTGCAATATTTTAACCATGGATATTGTTGAATTTCTTATGTGTGTCTCTGAGCTTTAGTTATTGAAGGTTTGAGCTTAGCGGTAAATGCTCTTGGACTCAACAAACAGTTAGGAGGTATTTGGCCCAACGAGTTGAGGGAACTGGAGTTGTGAGCTCCACTCCTTGTTTGGCCTAAGGAGTTGGTGAATCCCACTACTAAAAAACGTCAATTTTATACTTTATTAACTCCTTACACTGTGGGCCTCAGGAGTATAGCCCCCCATACTCCATAACTCTATGGAGTTCACAATTCCACTCATTGTTCCAAACGCCTCCTTAATGGTTTCAAAATTATATGGTCGTCCAAGTTTGAACCTAGCAAATATTAAGCTATTGAAGTTTTTATGGGGGTTAAAACAAAACCTTTAGCCTTCAGAACATGAATTTCGTCAAATAGTCATCTAGATATGCAACTAGGTTAAGTACTAAATAAATGTATTGTCATTCTATCAGATTTTCTTTTATGAAAAAATATACTTTTTAATAACCAAAGTAGTTGAAGCTTACAGTGTCTGTTTAATTCATATGCTCTTAACAGTTGTGAACCTAAATTTGAATGATGTTATTTTTTGTTTGAATTCAATGAGGAAATCAAACCATCTAATCTTTGAAATGATTATTGATGGATTACCTATTGAGCTATATTTGGATTGACATGTTTTGTTAATCTATTAGATAAATCATTCCAGCCTTTATGTTACTTATTATTCAGACATTACAGTTGCACAAATCCAAAACAAAGATCATATGCTTGGACTTGAACTTATTCAGCCTTTATGTTACTTATTATTAAATATCTCATGCATTCGTATATATTTCAGAACAAGCCAGTAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGA

mRNA sequence

ATGGGCTTCATGATTTCTAGATATCTCCTGAAAATGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTCCCCCACGTAGAAGATTCCATGCCACACCTCTGCCCTCAAGCCTCGCTTCAGTCTTCTACTTCTTTTTCTGAAAATAGTGTGGTTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAACACCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTACTTGTAATCAATTCTAATTCTACTAGATTATTCAGTCACAAGTCAACTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGGGTTACTGTGGAAATAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGATGAAAAAGATTCTACAATTGGATACGAAAAATTTGGACGATCAAGTCGAAAAGGCAGAAATCCTCGCAGCCCCACCAAAGCTTGTCTACAGCAAACTGATCTTACGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAAGCTTTATACTATGGTGGCCACTGAACAAGCCAGTAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGA

Coding sequence (CDS)

ATGGGCTTCATGATTTCTAGATATCTCCTGAAAATGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTCCCCCACGTAGAAGATTCCATGCCACACCTCTGCCCTCAAGCCTCGCTTCAGTCTTCTACTTCTTTTTCTGAAAATAGTGTGGTTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAACACCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTACTTGTAATCAATTCTAATTCTACTAGATTATTCAGTCACAAGTCAACTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGGGTTACTGTGGAAATAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGATGAAAAAGATTCTACAATTGGATACGAAAAATTTGGACGATCAAGTCGAAAAGGCAGAAATCCTCGCAGCCCCACCAAAGCTTGTCTACAGCAAACTGATCTTACGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAAGCTTTATACTATGGTGGCCACTGAACAAGCCAGTAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGA

Protein sequence

MGFMISRYLLKMPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARRVTVEIVEEADELLRKDEKDSTIGYEKFGRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINEVNVS

Homology

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BLAST of Lsi10G009140 vs. TrEMBL
Match: A0A0A0KWZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.4e-62
Identity = 151/260 (58.08%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++S
Sbjct: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIE  PKVDKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 164 SIEMIPKVDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 223

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRK 192
           NARR                       VTVE +EEADELLRKDE+DSTI  E        
Sbjct: 224 NARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILA----- 283

Query: 193 GRNPRSPTKACLQQTDLTHVCAFYKTY------RNLKSFILWWPL--NKPVGRILELCIL 242
                +P K    +  L                R LK   +  P   NKP GRILELCIL
Sbjct: 284 -----APPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 339

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BLAST of Lsi10G009140 vs. TrEMBL
Match: W9RK01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-33
Identity = 116/272 (42.65%), Postives = 138/272 (50.74%), Query Frame = 1


Query: 4   MISRYLLKMPNFHFSY--HISGVCRFPFRASSIVPHVEDS--MPHLCPQASLQSSTSFSE 63
           ++S     +P F      H S    F    S  +PH   S  +  LCP+ASL+SST F E
Sbjct: 6   LLSSTTSSLPTFRLRQPLHFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVE 65

Query: 64  NSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACL 123
                  NS + SS +  PK D+ G+FCSPRAARELAL              S VYA+CL
Sbjct: 66  TPNTHNSNSTSSSS-DALPKTDRFGRFCSPRAARELAL--------------SIVYASCL 125

Query: 124 EGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDS 183
           EGSDPVRLFEKR+NARR                       VTVE +EE +EL R D+K+S
Sbjct: 126 EGSDPVRLFEKRINARREPGYEFDKESLLQYNHMSFGGPPVTVETLEEEEELTRNDKKES 185

Query: 184 TIGYEKFGRSSRKG------RNPRSPTKACLQQTDLTHVCAFYKTYR-NLKSFILWWPLN 242
            I  E  G   +        R  R    A   Q D +HV    K    N K        N
Sbjct: 186 DIEAEVLGAPPKLVYSKLILRLTRKLLVAVSDQWD-SHVIVIDKVAPPNWK--------N 245

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BLAST of Lsi10G009140 vs. TrEMBL
Match: A0A067EKS2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 105/232 (45.26%), Postives = 126/232 (54.31%), Query Frame = 1


Query: 44  HLC----PQASLQSSTSFSENSVVEERNSIAVSSI-ETTPKVDKSGKFCSPRAARELALL 103
           H+C    P  S  ++    + ++ + R S+  SS  E  PK+DKSG+FCSPRAARELALL
Sbjct: 46  HVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALL 105

Query: 104 VINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR---------------------- 163
           V              VYAACLEGSDP+RLFEKRLN+RR                      
Sbjct: 106 V--------------VYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGP 165

Query: 164 -VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHV 223
            VT E VEEADELLR DE++S I  E      K   S    R  R    A + + D  HV
Sbjct: 166 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD-AHV 225

Query: 224 CAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE 242
               K    +      W +++P GRILEL ILHLAMSEITV+GTRHQIVINE
Sbjct: 226 HIIDKVVPPIWKV---WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE 259

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BLAST of Lsi10G009140 vs. TrEMBL
Match: M5WJ39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 108/225 (48.00%), Postives = 125/225 (55.56%), Query Frame = 1


Query: 47  PQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTR 106
           P+ SL++ST F+ +  +E+ NS    S E  PK+DKSG+FCSPRAARELAL         
Sbjct: 61  PRTSLRTST-FTLDEALEKPNS---DSREMLPKIDKSGRFCSPRAARELAL--------- 120

Query: 107 LFSHKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVE 166
                S VYAACLEGSDPVRLFEKR+N RR                       VTVE VE
Sbjct: 121 -----SIVYAACLEGSDPVRLFEKRMNVRREPGYEFDRASLLEYNPMSFGGPPVTVETVE 180

Query: 167 EADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYR 226
           EADELLR DEK+S I  E      K   S    R  R    A + + D +HV    K   
Sbjct: 181 EADELLRNDEKESAIEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKWD-SHVLVIDKVAP 240

Query: 227 -NLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE 242
            N K        ++P GRILELCILHLAMSEITV+ TRH IVINE
Sbjct: 241 PNWK--------DEPAGRILELCILHLAMSEITVLETRHPIVINE 258

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BLAST of Lsi10G009140 vs. TrEMBL
Match: A0A067ETF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 105/236 (44.49%), Postives = 127/236 (53.81%), Query Frame = 1


Query: 44  HLC----PQASLQSSTSFSENSVVEERNSIAVSSI-ETTPKVDKSGKFCSPRAARELALL 103
           H+C    P  S  ++    + ++ + R S+  SS  E  PK+DKSG+FCSPRAARELALL
Sbjct: 46  HVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALL 105

Query: 104 VINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR---------------------- 163
           V              VYAACLEGSDP+RLFEKRLN+RR                      
Sbjct: 106 V--------------VYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGP 165

Query: 164 -VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHV 223
            VT E VEEADELLR DE++S I  E      K   S    R  R    A + + D  HV
Sbjct: 166 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD-AHV 225

Query: 224 CAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINEVNVS 246
               K    +      W  ++P GRILEL ILHLAMSEITV+GTRHQIVINE  ++
Sbjct: 226 HIIDKVVPPI------WK-DQPAGRILELSILHLAMSEITVVGTRHQIVINEARLT 259

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BLAST of Lsi10G009140 vs. TAIR10
Match: AT4G26370.1 (AT4G26370.1 antitermination NusB domain-containing protein)

HSP 1 Score: 107.8 bits (268), Expect = 9.4e-24
Identity = 83/193 (43.01%), Postives = 99/193 (51.30%), Query Frame = 1


Query: 78  PKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR- 137
           PK+DKSG+  SPRAARELAL+++              YAACLEGSDP+RLFEKR+NARR 
Sbjct: 86  PKIDKSGRLSSPRAARELALVIL--------------YAACLEGSDPIRLFEKRINARRE 145

Query: 138 ----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSR 197
                                 V  E  EE DEL+R DEK+S I  E      K   S  
Sbjct: 146 PGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKL 205

Query: 198 KGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEI 242
             R  +    A + + D +HV    K      S   W   + P GRILE  ILHLAMSE+
Sbjct: 206 VLRFAKKLLAAVVDKWD-SHVVIIEKI-----SPPDW--KSAPAGRILEFSILHLAMSEV 256

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BLAST of Lsi10G009140 vs. NCBI nr
Match: gi|700198860|gb|KGN54018.1| (hypothetical protein Csa_4G268020 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 151/260 (58.08%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++S
Sbjct: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIE  PKVDKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 164 SIEMIPKVDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 223

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRK 192
           NARR                       VTVE +EEADELLRKDE+DSTI  E        
Sbjct: 224 NARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILA----- 283

Query: 193 GRNPRSPTKACLQQTDLTHVCAFYKTY------RNLKSFILWWPL--NKPVGRILELCIL 242
                +P K    +  L                R LK   +  P   NKP GRILELCIL
Sbjct: 284 -----APPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 339

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BLAST of Lsi10G009140 vs. NCBI nr
Match: gi|778692749|ref|XP_004149639.2| (PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 151/260 (58.08%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++S
Sbjct: 40  PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 99

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIE  PKVDKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 100 SIEMIPKVDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 159

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRK 192
           NARR                       VTVE +EEADELLRKDE+DSTI  E        
Sbjct: 160 NARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILA----- 219

Query: 193 GRNPRSPTKACLQQTDLTHVCAFYKTY------RNLKSFILWWPL--NKPVGRILELCIL 242
                +P K    +  L                R LK   +  P   NKP GRILELCIL
Sbjct: 220 -----APPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 275

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BLAST of Lsi10G009140 vs. NCBI nr
Match: gi|659097953|ref|XP_008449897.1| (PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 2.0e-60
Identity = 151/258 (58.53%), Postives = 166/258 (64.34%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VS
Sbjct: 115 PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 174

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIET PK+DKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 175 SIETIPKIDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 234

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KF 192
           N+RR                       VTVE +EEADELLRKDE+DSTI  E      K 
Sbjct: 235 NSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKM 294

Query: 193 GRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHL 242
             S    R  R    A +   D        +  +  K     W  NKP GRILELCILHL
Sbjct: 295 VYSKLILRFTRKLLVAVVDGWD-------NRALKIEKVIPPTWK-NKPAGRILELCILHL 350

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BLAST of Lsi10G009140 vs. NCBI nr
Match: gi|703124582|ref|XP_010103088.1| (hypothetical protein L484_005067 [Morus notabilis])

HSP 1 Score: 149.4 bits (376), Expect = 8.0e-33
Identity = 116/272 (42.65%), Postives = 138/272 (50.74%), Query Frame = 1


Query: 4   MISRYLLKMPNFHFSY--HISGVCRFPFRASSIVPHVEDS--MPHLCPQASLQSSTSFSE 63
           ++S     +P F      H S    F    S  +PH   S  +  LCP+ASL+SST F E
Sbjct: 6   LLSSTTSSLPTFRLRQPLHFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVE 65

Query: 64  NSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACL 123
                  NS + SS +  PK D+ G+FCSPRAARELAL              S VYA+CL
Sbjct: 66  TPNTHNSNSTSSSS-DALPKTDRFGRFCSPRAARELAL--------------SIVYASCL 125

Query: 124 EGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDS 183
           EGSDPVRLFEKR+NARR                       VTVE +EE +EL R D+K+S
Sbjct: 126 EGSDPVRLFEKRINARREPGYEFDKESLLQYNHMSFGGPPVTVETLEEEEELTRNDKKES 185

Query: 184 TIGYEKFGRSSRKG------RNPRSPTKACLQQTDLTHVCAFYKTYR-NLKSFILWWPLN 242
            I  E  G   +        R  R    A   Q D +HV    K    N K        N
Sbjct: 186 DIEAEVLGAPPKLVYSKLILRLTRKLLVAVSDQWD-SHVIVIDKVAPPNWK--------N 245

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BLAST of Lsi10G009140 vs. NCBI nr
Match: gi|641835535|gb|KDO54510.1| (hypothetical protein CISIN_1g021860mg [Citrus sinensis])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 105/232 (45.26%), Postives = 126/232 (54.31%), Query Frame = 1


Query: 44  HLC----PQASLQSSTSFSENSVVEERNSIAVSSI-ETTPKVDKSGKFCSPRAARELALL 103
           H+C    P  S  ++    + ++ + R S+  SS  E  PK+DKSG+FCSPRAARELALL
Sbjct: 46  HVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALL 105

Query: 104 VINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR---------------------- 163
           V              VYAACLEGSDP+RLFEKRLN+RR                      
Sbjct: 106 V--------------VYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGP 165

Query: 164 -VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHV 223
            VT E VEEADELLR DE++S I  E      K   S    R  R    A + + D  HV
Sbjct: 166 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD-AHV 225

Query: 224 CAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE 242
               K    +      W +++P GRILEL ILHLAMSEITV+GTRHQIVINE
Sbjct: 226 HIIDKVVPPIWKV---WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE 259

The following BLAST results are available for this feature:

BLAST of Lsi10G009140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G009140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWZ5_CUCSA	7.4e-62	58.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1	[more]
W9RK01_9ROSA	5.5e-33	42.65	Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1	[more]
A0A067EKS2_CITSI	8.0e-32	45.26	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1	[more]
M5WJ39_PRUPE	2.6e-30	48.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1	[more]
A0A067ETF9_CITSI	2.6e-30	44.49	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1	[more]

BLAST of Lsi10G009140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26370.1	9.4e-24	43.01	antitermination NusB domain-containing protein	[more]

BLAST of Lsi10G009140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198860\|gb\|KGN54018.1\|	1.1e-61	58.08	hypothetical protein Csa_4G268020 [Cucumis sativus]	[more]
gi\|778692749\|ref\|XP_004149639.2\|	1.1e-61	58.08	PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus]	[more]
gi\|659097953\|ref\|XP_008449897.1\|	2.0e-60	58.53	PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo]	[more]
gi\|703124582\|ref\|XP_010103088.1\|	8.0e-33	42.65	hypothetical protein L484_005067 [Morus notabilis]	[more]
gi\|641835535\|gb\|KDO54510.1\|	1.1e-31	45.26	hypothetical protein CISIN_1g021860mg [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009140.1	Lsi10G009140.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G009140	Csa4G268020	Cucumber (Chinese Long) v2	culsiB246
Lsi10G009140	CSPI04G12480	Wild cucumber (PI 183967)	cpilsiB245
Lsi10G009140	MELO3C014730	Melon (DHL92) v3.5.1	lsimeB072
Lsi10G009140	ClCG02G024430	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G009140	MELO3C014730.2	Melon (DHL92) v3.6.1	lsimedB074
Lsi10G009140	Cla97C02G050690	Watermelon (97103) v2	lsiwmbB052
Lsi10G009140	Bhi10G000403	Wax gourd	lsiwgoB079
Lsi10G009140	CsGy4G011760	Cucumber (Gy14) v2	cgyblsiB235
Lsi10G009140	CsaV3_4G017570	Cucumber (Chinese Long) v3	cuclsiB271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G009140	Cucumber (Gy14) v1	cgylsiB245
Lsi10G009140	Cucurbita maxima (Rimu)	cmalsiB500
Lsi10G009140	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G009140	Cucurbita moschata (Rifu)	cmolsiB484
Lsi10G009140	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G009140	Cucurbita pepo (Zucchini)	cpelsiB227
Lsi10G009140	Cucurbita pepo (Zucchini)	cpelsiB598
Lsi10G009140	Watermelon (97103) v1	lsiwmB078
Lsi10G009140	Silver-seed gourd	carlsiB458