Lsi10G009140.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009140.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Antitermination NusB domain-containing protein
Location	chr10 : 13623254 .. 13626653 (+)
Sequence length	738

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCATGATTTCTAGATATCTCCTGAAAATGTGACTTAACTTAGCATGCCTAGTTTTCATTCTTGCTCTTTGTTTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTCCCCCACGTAGAAGATTCCATGCCACACCTCTGCCCTCAAGCCTCGCTTCAGTCTTCTACTTCTTTTTCTGAAAATAGTGTGGTTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAACACCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTAAGATCCACCATTTCATTTTCACTTTTTTTTCCCCCCTAAACATCTGAATATCTCCTCTCTACCTTTTTACCTATTCACAAAGTTGGCCCACTCACCAAGAATATACTCTCAGAATTTGTTTAATTTCTAGACTTGTAATCAATTCTAATTCTACTAGATTATTCAGTCACAAGTCAACTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGGGGTAAAAAAGATTTTGTTGGGGAAATAGATGTCACATATTTAACTCAAATATAAAACCAACGTCTTGCTTTATTTGTCTGTACAATTCAAAATCGGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGCCCGCCAGTTACTGTGGAAATAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGATGAAAAAGATTCTACAATTGGTAAACAATTACGTGACCTTCGTATATATATTATTTCTTCTTCTTAATTCACTCATTACTTTAGAATTGAGCCCCGAAAGAGACAAAACTATTCATCGAAAAGATGAACCTCTCACTAATGCTCAAAGGATACAAACTCCTAAAAGAGTAAAAAGGAAAAAGAAAAGCAAAGAAATATAAAGATTCCACAAACCATAACAAATGATATACTTAAAAAACTTAACAAAAAACTAATACATTAACATCAAGCATGGGTATGAACGTGGAGTTGCCCATAGAAGTTGGAGCAGATGTCCAAAAGCTCCAACAAGTGTTGTTGCAAAATCGCAATCTTCTGTTTGGGTAACTTTATTTGGCAAAGAAGCTTCTCCTTCGAAATTTAAACCAATTCTTCATCAAGATGAGCTATAATAAAACTCAAAGAGAGCCCTTGAAGATAAAATTCTCACATCCTCGAAAGAGATATAGAGAGAGAGGAGAAATGCCAAAAAAACTCTTGAACTTCCAAAAAAAAAAAAAAAGGGCAGTATCTAATGAAAGGATCAAGAGGACTACTAGTTCCAAGGCTCCCAAATGTCACTATGGATCAATGCACAAGGGTTGGAAGATTTGAATAAATTTCTGGTATGTTTGGAGAGTTGACACATTTTGCACAGAAACTGACTAGATTTTTTTTATTAATGAATAACCGAGGAAACAATTTTTTCAGGATACGAAAAATTTGGACGATCAAGTCGAAAGTGCCATAACATGACTTTGCTTTAACAAGACAGTGATTTAGAACTGGAAGTAGACTCGGGAATAAGACTGCTAGAATTGAAAGAAGACTCACAACTAAGACTGGAAGACGATTTTGAAGGATTAACTGCAAATTTGACGAAGGAACCAAGGGTTCTACCAAAAGCAAAATTCAGAGGCTAAAATGTAACATTTGAAAATTTAGAGACCAAAATGCAACCGAACCCAAAACTGAGGGACTAAAATTATATTTTTCCCATGTTTTTATTATAGTTGTAAATGTAGTATTGTCTAGCCCCAGAGTCCGATTTTATTGCATTTAGTATTAAAGTTATGTTTTTCTGCATGACCATATCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGCTTGTCTACAGCAAACTGATCTTACGGTAAATGTGGTTTATATTCCCCTGCCTTTGGCAGAGGAAGATAAGATGAAAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTTACTTCACGCATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGTCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGTAGAAAGCTTGTTTCTTTTTGCTATTTTATTTTCTGATTTTCTCCTTTTCTAGTTGGGAATAATGTTGAACCATTTATCATGTTCGTGTGGTTATAATACTCCTCGTGAACTGATCTTTGCCTCATAATCATAGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAAGCTTTATACTATGGTGGCCACTGGTGAGGATGGAACCACAAACATATGTGCAATATTTTAACCATGGATATTGTTGAATTTCTTATGTGTGTCTCTGAGCTTTAGTTATTGAAGGTTTGAGCTTAGCGGTAAATGCTCTTGGACTCAACAAACAGTTAGGAGGTATTTGGCCCAACGAGTTGAGGGAACTGGAGTTGTGAGCTCCACTCCTTGTTTGGCCTAAGGAGTTGGTGAATCCCACTACTAAAAAACGTCAATTTTATACTTTATTAACTCCTTACACTGTGGGCCTCAGGAGTATAGCCCCCCATACTCCATAACTCTATGGAGTTCACAATTCCACTCATTGTTCCAAACGCCTCCTTAATGGTTTCAAAATTATATGGTCGTCCAAGTTTGAACCTAGCAAATATTAAGCTATTGAAGTTTTTATGGGGGTTAAAACAAAACCTTTAGCCTTCAGAACATGAATTTCGTCAAATAGTCATCTAGATATGCAACTAGGTTAAGTACTAAATAAATGTATTGTCATTCTATCAGATTTTCTTTTATGAAAAAATATACTTTTTAATAACCAAAGTAGTTGAAGCTTACAGTGTCTGTTTAATTCATATGCTCTTAACAGTTGTGAACCTAAATTTGAATGATGTTATTTTTTGTTTGAATTCAATGAGGAAATCAAACCATCTAATCTTTGAAATGATTATTGATGGATTACCTATTGAGCTATATTTGGATTGACATGTTTTGTTAATCTATTAGATAAATCATTCCAGCCTTTATGTTACTTATTATTCAGACATTACAGTTGCACAAATCCAAAACAAAGATCATATGCTTGGACTTGAACTTATTCAGCCTTTATGTTACTTATTATTAAATATCTCATGCATTCGTATATATTTCAGAACAAGCCAGTAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGA

mRNA sequence

ATGGGCTTCATGATTTCTAGATATCTCCTGAAAATGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTCCCCCACGTAGAAGATTCCATGCCACACCTCTGCCCTCAAGCCTCGCTTCAGTCTTCTACTTCTTTTTCTGAAAATAGTGTGGTTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAACACCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTACTTGTAATCAATTCTAATTCTACTAGATTATTCAGTCACAAGTCAACTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGGGTTACTGTGGAAATAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGATGAAAAAGATTCTACAATTGGATACGAAAAATTTGGACGATCAAGTCGAAAAGGCAGAAATCCTCGCAGCCCCACCAAAGCTTGTCTACAGCAAACTGATCTTACGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAAGCTTTATACTATGGTGGCCACTGAACAAGCCAGTAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGA

Coding sequence (CDS)

ATGGGCTTCATGATTTCTAGATATCTCCTGAAAATGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTCCCCCACGTAGAAGATTCCATGCCACACCTCTGCCCTCAAGCCTCGCTTCAGTCTTCTACTTCTTTTTCTGAAAATAGTGTGGTTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAACACCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTACTTGTAATCAATTCTAATTCTACTAGATTATTCAGTCACAAGTCAACTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGGGTTACTGTGGAAATAGTTGAAGAAGCAGATGAGCTTTTACGTAAAGATGAAAAAGATTCTACAATTGGATACGAAAAATTTGGACGATCAAGTCGAAAAGGCAGAAATCCTCGCAGCCCCACCAAAGCTTGTCTACAGCAAACTGATCTTACGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAAGCTTTATACTATGGTGGCCACTGAACAAGCCAGTAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGA

Protein sequence

MGFMISRYLLKMPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARRVTVEIVEEADELLRKDEKDSTIGYEKFGRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINEVNVS

Homology

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BLAST of Lsi10G009140.1 vs. TrEMBL
Match: A0A0A0KWZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.4e-62
Identity = 151/260 (58.08%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++S
Sbjct: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIE  PKVDKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 164 SIEMIPKVDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 223

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRK 192
           NARR                       VTVE +EEADELLRKDE+DSTI  E        
Sbjct: 224 NARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILA----- 283

Query: 193 GRNPRSPTKACLQQTDLTHVCAFYKTY------RNLKSFILWWPL--NKPVGRILELCIL 242
                +P K    +  L                R LK   +  P   NKP GRILELCIL
Sbjct: 284 -----APPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 339

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BLAST of Lsi10G009140.1 vs. TrEMBL
Match: W9RK01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-33
Identity = 116/272 (42.65%), Postives = 138/272 (50.74%), Query Frame = 1


Query: 4   MISRYLLKMPNFHFSY--HISGVCRFPFRASSIVPHVEDS--MPHLCPQASLQSSTSFSE 63
           ++S     +P F      H S    F    S  +PH   S  +  LCP+ASL+SST F E
Sbjct: 6   LLSSTTSSLPTFRLRQPLHFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVE 65

Query: 64  NSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACL 123
                  NS + SS +  PK D+ G+FCSPRAARELAL              S VYA+CL
Sbjct: 66  TPNTHNSNSTSSSS-DALPKTDRFGRFCSPRAARELAL--------------SIVYASCL 125

Query: 124 EGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDS 183
           EGSDPVRLFEKR+NARR                       VTVE +EE +EL R D+K+S
Sbjct: 126 EGSDPVRLFEKRINARREPGYEFDKESLLQYNHMSFGGPPVTVETLEEEEELTRNDKKES 185

Query: 184 TIGYEKFGRSSRKG------RNPRSPTKACLQQTDLTHVCAFYKTYR-NLKSFILWWPLN 242
            I  E  G   +        R  R    A   Q D +HV    K    N K        N
Sbjct: 186 DIEAEVLGAPPKLVYSKLILRLTRKLLVAVSDQWD-SHVIVIDKVAPPNWK--------N 245

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BLAST of Lsi10G009140.1 vs. TrEMBL
Match: A0A067EKS2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 105/232 (45.26%), Postives = 126/232 (54.31%), Query Frame = 1


Query: 44  HLC----PQASLQSSTSFSENSVVEERNSIAVSSI-ETTPKVDKSGKFCSPRAARELALL 103
           H+C    P  S  ++    + ++ + R S+  SS  E  PK+DKSG+FCSPRAARELALL
Sbjct: 46  HVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALL 105

Query: 104 VINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR---------------------- 163
           V              VYAACLEGSDP+RLFEKRLN+RR                      
Sbjct: 106 V--------------VYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGP 165

Query: 164 -VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHV 223
            VT E VEEADELLR DE++S I  E      K   S    R  R    A + + D  HV
Sbjct: 166 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD-AHV 225

Query: 224 CAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE 242
               K    +      W +++P GRILEL ILHLAMSEITV+GTRHQIVINE
Sbjct: 226 HIIDKVVPPIWKV---WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE 259

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BLAST of Lsi10G009140.1 vs. TrEMBL
Match: M5WJ39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 108/225 (48.00%), Postives = 125/225 (55.56%), Query Frame = 1


Query: 47  PQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTR 106
           P+ SL++ST F+ +  +E+ NS    S E  PK+DKSG+FCSPRAARELAL         
Sbjct: 61  PRTSLRTST-FTLDEALEKPNS---DSREMLPKIDKSGRFCSPRAARELAL--------- 120

Query: 107 LFSHKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVE 166
                S VYAACLEGSDPVRLFEKR+N RR                       VTVE VE
Sbjct: 121 -----SIVYAACLEGSDPVRLFEKRMNVRREPGYEFDRASLLEYNPMSFGGPPVTVETVE 180

Query: 167 EADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYR 226
           EADELLR DEK+S I  E      K   S    R  R    A + + D +HV    K   
Sbjct: 181 EADELLRNDEKESAIEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKWD-SHVLVIDKVAP 240

Query: 227 -NLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE 242
            N K        ++P GRILELCILHLAMSEITV+ TRH IVINE
Sbjct: 241 PNWK--------DEPAGRILELCILHLAMSEITVLETRHPIVINE 258

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BLAST of Lsi10G009140.1 vs. TrEMBL
Match: A0A067ETF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 105/236 (44.49%), Postives = 127/236 (53.81%), Query Frame = 1


Query: 44  HLC----PQASLQSSTSFSENSVVEERNSIAVSSI-ETTPKVDKSGKFCSPRAARELALL 103
           H+C    P  S  ++    + ++ + R S+  SS  E  PK+DKSG+FCSPRAARELALL
Sbjct: 46  HVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALL 105

Query: 104 VINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR---------------------- 163
           V              VYAACLEGSDP+RLFEKRLN+RR                      
Sbjct: 106 V--------------VYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGP 165

Query: 164 -VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHV 223
            VT E VEEADELLR DE++S I  E      K   S    R  R    A + + D  HV
Sbjct: 166 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD-AHV 225

Query: 224 CAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINEVNVS 246
               K    +      W  ++P GRILEL ILHLAMSEITV+GTRHQIVINE  ++
Sbjct: 226 HIIDKVVPPI------WK-DQPAGRILELSILHLAMSEITVVGTRHQIVINEARLT 259

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BLAST of Lsi10G009140.1 vs. TAIR10
Match: AT4G26370.1 (AT4G26370.1 antitermination NusB domain-containing protein)

HSP 1 Score: 107.8 bits (268), Expect = 9.4e-24
Identity = 83/193 (43.01%), Postives = 99/193 (51.30%), Query Frame = 1


Query: 78  PKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR- 137
           PK+DKSG+  SPRAARELAL+++              YAACLEGSDP+RLFEKR+NARR 
Sbjct: 86  PKIDKSGRLSSPRAARELALVIL--------------YAACLEGSDPIRLFEKRINARRE 145

Query: 138 ----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSR 197
                                 V  E  EE DEL+R DEK+S I  E      K   S  
Sbjct: 146 PGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKL 205

Query: 198 KGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEI 242
             R  +    A + + D +HV    K      S   W   + P GRILE  ILHLAMSE+
Sbjct: 206 VLRFAKKLLAAVVDKWD-SHVVIIEKI-----SPPDW--KSAPAGRILEFSILHLAMSEV 256

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BLAST of Lsi10G009140.1 vs. NCBI nr
Match: gi|700198860|gb|KGN54018.1| (hypothetical protein Csa_4G268020 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 151/260 (58.08%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++S
Sbjct: 104 PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 163

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIE  PKVDKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 164 SIEMIPKVDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 223

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRK 192
           NARR                       VTVE +EEADELLRKDE+DSTI  E        
Sbjct: 224 NARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILA----- 283

Query: 193 GRNPRSPTKACLQQTDLTHVCAFYKTY------RNLKSFILWWPL--NKPVGRILELCIL 242
                +P K    +  L                R LK   +  P   NKP GRILELCIL
Sbjct: 284 -----APPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 339

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BLAST of Lsi10G009140.1 vs. NCBI nr
Match: gi|778692749|ref|XP_004149639.2| (PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 151/260 (58.08%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++S
Sbjct: 40  PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISIS 99

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIE  PKVDKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 100 SIEMIPKVDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 159

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRK 192
           NARR                       VTVE +EEADELLRKDE+DSTI  E        
Sbjct: 160 NARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILA----- 219

Query: 193 GRNPRSPTKACLQQTDLTHVCAFYKTY------RNLKSFILWWPL--NKPVGRILELCIL 242
                +P K    +  L                R LK   +  P   NKP GRILELCIL
Sbjct: 220 -----APPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 275

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BLAST of Lsi10G009140.1 vs. NCBI nr
Match: gi|659097953|ref|XP_008449897.1| (PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 2.0e-60
Identity = 151/258 (58.53%), Postives = 166/258 (64.34%), Query Frame = 1


Query: 13  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVS 72
           PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VS
Sbjct: 115 PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 174

Query: 73  SIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRL 132
           SIET PK+DKSGKFCSPRAARELAL              S VYAACLEGSDPVRLFEKRL
Sbjct: 175 SIETIPKIDKSGKFCSPRAARELAL--------------SIVYAACLEGSDPVRLFEKRL 234

Query: 133 NARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KF 192
           N+RR                       VTVE +EEADELLRKDE+DSTI  E      K 
Sbjct: 235 NSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKM 294

Query: 193 GRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHL 242
             S    R  R    A +   D        +  +  K     W  NKP GRILELCILHL
Sbjct: 295 VYSKLILRFTRKLLVAVVDGWD-------NRALKIEKVIPPTWK-NKPAGRILELCILHL 350

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BLAST of Lsi10G009140.1 vs. NCBI nr
Match: gi|703124582|ref|XP_010103088.1| (hypothetical protein L484_005067 [Morus notabilis])

HSP 1 Score: 149.4 bits (376), Expect = 8.0e-33
Identity = 116/272 (42.65%), Postives = 138/272 (50.74%), Query Frame = 1


Query: 4   MISRYLLKMPNFHFSY--HISGVCRFPFRASSIVPHVEDS--MPHLCPQASLQSSTSFSE 63
           ++S     +P F      H S    F    S  +PH   S  +  LCP+ASL+SST F E
Sbjct: 6   LLSSTTSSLPTFRLRQPLHFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVE 65

Query: 64  NSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACL 123
                  NS + SS +  PK D+ G+FCSPRAARELAL              S VYA+CL
Sbjct: 66  TPNTHNSNSTSSSS-DALPKTDRFGRFCSPRAARELAL--------------SIVYASCL 125

Query: 124 EGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDS 183
           EGSDPVRLFEKR+NARR                       VTVE +EE +EL R D+K+S
Sbjct: 126 EGSDPVRLFEKRINARREPGYEFDKESLLQYNHMSFGGPPVTVETLEEEEELTRNDKKES 185

Query: 184 TIGYEKFGRSSRKG------RNPRSPTKACLQQTDLTHVCAFYKTYR-NLKSFILWWPLN 242
            I  E  G   +        R  R    A   Q D +HV    K    N K        N
Sbjct: 186 DIEAEVLGAPPKLVYSKLILRLTRKLLVAVSDQWD-SHVIVIDKVAPPNWK--------N 245

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BLAST of Lsi10G009140.1 vs. NCBI nr
Match: gi|641835535|gb|KDO54510.1| (hypothetical protein CISIN_1g021860mg [Citrus sinensis])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 105/232 (45.26%), Postives = 126/232 (54.31%), Query Frame = 1


Query: 44  HLC----PQASLQSSTSFSENSVVEERNSIAVSSI-ETTPKVDKSGKFCSPRAARELALL 103
           H+C    P  S  ++    + ++ + R S+  SS  E  PK+DKSG+FCSPRAARELALL
Sbjct: 46  HVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALL 105

Query: 104 VINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR---------------------- 163
           V              VYAACLEGSDP+RLFEKRLN+RR                      
Sbjct: 106 V--------------VYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGP 165

Query: 164 -VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHV 223
            VT E VEEADELLR DE++S I  E      K   S    R  R    A + + D  HV
Sbjct: 166 PVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWD-AHV 225

Query: 224 CAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE 242
               K    +      W +++P GRILEL ILHLAMSEITV+GTRHQIVINE
Sbjct: 226 HIIDKVVPPIWKV---WKMDQPAGRILELSILHLAMSEITVVGTRHQIVINE 259

The following BLAST results are available for this feature:

BLAST of Lsi10G009140.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G009140.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWZ5_CUCSA	7.4e-62	58.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1	[more]
W9RK01_9ROSA	5.5e-33	42.65	Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1	[more]
A0A067EKS2_CITSI	8.0e-32	45.26	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1	[more]
M5WJ39_PRUPE	2.6e-30	48.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1	[more]
A0A067ETF9_CITSI	2.6e-30	44.49	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1	[more]

BLAST of Lsi10G009140.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26370.1	9.4e-24	43.01	antitermination NusB domain-containing protein	[more]

BLAST of Lsi10G009140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198860\|gb\|KGN54018.1\|	1.1e-61	58.08	hypothetical protein Csa_4G268020 [Cucumis sativus]	[more]
gi\|778692749\|ref\|XP_004149639.2\|	1.1e-61	58.08	PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus]	[more]
gi\|659097953\|ref\|XP_008449897.1\|	2.0e-60	58.53	PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo]	[more]
gi\|703124582\|ref\|XP_010103088.1\|	8.0e-33	42.65	hypothetical protein L484_005067 [Morus notabilis]	[more]
gi\|641835535\|gb\|KDO54510.1\|	1.1e-31	45.26	hypothetical protein CISIN_1g021860mg [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G009140	Lsi10G009140	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G009140.1	Lsi10G009140.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G009140.1.CDS.1	Lsi10G009140.1.CDS.1	CDS
Lsi10G009140.1.CDS.2	Lsi10G009140.1.CDS.2	CDS
Lsi10G009140.1.CDS.3	Lsi10G009140.1.CDS.3	CDS
Lsi10G009140.1.CDS.4	Lsi10G009140.1.CDS.4	CDS
Lsi10G009140.1.CDS.5	Lsi10G009140.1.CDS.5	CDS
Lsi10G009140.1.CDS.6	Lsi10G009140.1.CDS.6	CDS
Lsi10G009140.1.CDS.7	Lsi10G009140.1.CDS.7	CDS
Lsi10G009140.1.CDS.8	Lsi10G009140.1.CDS.8	CDS