ClCG02G024430 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G024430
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionN utilization substance protein B-like protein
LocationCG_Chr02 : 38686363 .. 38692283 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTTCCTTCTTCCACTACTGGAAATGCCTTTGCCTCCAAATCCCCAGTGAGTAGCGTGGGCTGAATTTGGGGCATTTTCAAAATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATCCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACACTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGTTTCTCTTTCATTTGCCATTTCTATGTCCTTCCCCTTCTTCTGCTCTCTATCCTTTACCTACTCCTCTGTTTCCTTTTCAATTCAAACTCTGCTTCCTAAATCTTGCTCACTATGATCACCATGTAAGCAGAATTAAGGAATTAATGGTGAATCTTGGCTAAATTCATGTCAATCGTTTTTAGTTTCTTATTTTGAATTTTAATTCCTCTTTAATTTCCTTTTAGGATTTCATTCTCGCCCTCCCTCATGCATTCTCTACGACTTTGATTCATAATTATAAGTTTTTTTTTTTTTTTTTTTTTGCATAAGAAATTCATAATAATAAGTTTTGAAATTTGATTCTTGGAGAATTCTTTCCTTTGGGTCCTTTAAGCTACATCAGTTCACCAACAATTGACCTCTCTGTTTATTTCGCACGCTTAGAAATTTGAATTGTGAAATGGAAACCATAGGATGTGGCATGTCTCTTCACTTCATACTAGTTACTCCCTCTGTATACTTGCATTATCTTTACGACTTTCCAGATGGTGGATGCGGGGTCAATGCGTAACATTTGCTTTAAAGGTTGTTTTTTGGGTCTTTCCTTAGTAGTCTGAAGTTAGGCTATACCAGATGGCACCTGGATGAGACATCGAGATAACACGACCGCCATTTTATACTGGTCAACAGTAACGAACTTGGTTTTATGTAATGCAATCTATGGTTACTACGTTGAAAAACACTGCTGAAACTAAAAGCTTCTTCTTCCAAATACTCTCTCACTTGTGAGCTTGGAATAAGCTTAAGAACTTAGGGTGTGATTGTGGAGAGGAATTGGGAGAGGTGGAGTTGTTTGGCCGAAGGAGTTATTAAAAGCATTGTAAATCCCATGACTCATTAGCATCGATTCCACATTTATTAACTCCTTAAATTGTGGTTTATGTCTAATTGACACAGCTGCTAGAGGCAAGGGTGAACTTTGATGCCAGAAAATTGTCTTATTGTTATTTTACCTAGTTTTTCTTAAAGAAAGTAAAAGGGAAAAAAGAAAGAGAAAGATATAGTCCATGATTTCTAGATATCTCTTGAAAACGTGACTTAGCATGCCTAATTTTCATTCTTGCTCTTCGTCTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTAAGATCCATCATTTCCTTTTTTTTCCTAACATATGAATATCTCCTCTCTACCTTTTTACCTATTCAAAAAGTTGGCCTACTCACCCAGAATATACTCTAAGAATTTGTTTAATTTCTAGACTTGTAATCAATTCTAATCGGATTATTCGATCACAGGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGGTAATCTATGGTTGAGACATGATACATGGTTTCTATTGCCGCCCCATATACTATTTGGTGTCTGTGTGTTTTTTATATATTTATATAATTTCAAAAAATATAAAAAAAAAAAAAAAGATTGTGTTGGGGAAATAGATGTCACATATTTAACTCAAATATAAAACCAACTTCTTGCTTTATTTGTTTGTACAATTCAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGGTAAACAATTACGTGACCTTCGTATATATATTATTTCTTCTTCTTAATTCACTCATTACTTTATATTAAAAACAGAATTGGACCCTAAAAGAGACAAAACTTTTTAGAGGAAAAGAGAGACTACCGCTGAAAGGATACAAATTCCTAATTCCTAAAGGAGTAAAAATGAAAAAGAAAAGCATAGAAATAAAAGATTCCACAAACCATAACAAATGATATTCTTAAAAACTTAACAAAGAATTAATACATTAACGTCAAGCATGGGTATGAACGTCGAGTTGCCCATAGAAGTTGGAGTAGATGTCCAAAAGCTCCAACAAGTATTGAAAAATTGCAATCTTCTGTTTAGGTAACTTTATTTGACAAAGAAGCTTTTCCTTCTAAATTTTAACCTCTTCTTCATCAAGAAGTGTTATTAACGCTGATTAAATAACAGGACTGTATTAGGTTCCATGAGAAATGTTGAAAATAAAACTCAAAGAGGCCCTTGAAGATAAAATTCTCACATCGTTGAAATGGATATATAGAGGGGAGAAATGCCAAAAAACTCTTGAACTTCCAGAAGAAAAGTTTCAACTCTTTTTATTTTTTATTTTTATATAATTAATGCAGTATCTAATGAAAGAATCAAGAGGACTACTAGTTCCAAGGCCCCAAATGTCATATGGATCAATGCAGAAGGGTCAGAAGATTTGCAGGGCACACATGGATAAATATTTTTGGTATGTTTGGAGAGTTGACAAATCTTGCACTGAAAATGACTTGATTTCTTATTAATGAATAACCGAGGTAACAATTTTTCAAATATGAAAAATTTGGATGACCGAGAAAAAAGTTCTACAACATGACTTTGCCTTAACAAGACAAGGATTTAAAACTGGAAGTAGATTCGGGAATAAGGGTATGTTGGGAATATATTTTCAAGTGTTTAATTTAAAAAATAAGTCATTTTGAAAAATTGAAGTGTTTGGCAACCACTCAAAATAGATTTTGAAGTGTATTTTGAACGGTTTTTATAAAAAGAGTTATAAAAATGAGTTTTTTGAAAATTACTTTTTCTTCAAGTCAATCCAAATAGGCCCTAAAACTACAAAATTGAGAAAATACTCACAACTAAGACTGGAATATGATTTTGAGGGATTAACCACAAATTTGACGGAGGGATCAAGGATTCTACCAAAAGCAAAACTCAAAGGGCAAAATGTCACTTTTGAAAATTTAGAAACCCAAATGCAACCAAACCCAAAACTTAGGAACTAAAGTTTATTTTTCCCATGTGTTTTCTATAGTTGTAAATGCAGTATTGTCTAGCCTCAAAGTCCGATTTTATTGCGGTTAGTATTAAAGTTCTGTTTTCTGCATGACCGTATCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTAAACGTGGTTTATATTCCCCTGCCTTTGGCAGAGGAAGATAAGATGACAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTTACTTCAAGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGTGAAAAAAGCTTGTTTCTTTTTGCTAATTTATTTTCTGATTTTCTCTTCTCTTCTAGTTGGGAATATACGTTGAACCATTTATCATGCGATTATAATACTCCTGAGCTGATCATTGCCTCATAATCATAGCATATGTGTGCTTTTTACAACACTTACAGAAATTTGAAAAGCTTTGTATGATGGTGTCAAGGATGGAACCACAAACACATGTGCACTATTTCATCCATGGATATTGTTGAATTTCTCGTGTGTTAGAAACTCTGAGCTTTAATTATCGAAGGTTTGAGCTTAGTGATAAACATCCTTGGACTCACAAACAGTTAATGGTTTCAAAATTTGTTGGATCTCCATTCCAGAATTTTATATCTTACAGGTTCTTGACAACATAATTATATAGTCTTCCAAGTTTGAACCCAGAAAATATTAAGCTGTTGATGTTTTTATGGGGTTAAAATAAAACCTTTAGCAACCATCATAAGACAGCCTAGTGGTAAATAAGGGAACATTCCCTTGATGCAGGGCTAAGAGGTCATGGATTCAATCTATGGTGGCCACCTACTTATGGATTTAATTTCTTGTGAGTTTCATTGATACCCAAATCCATGGTAATCACCTATTTAAGATTTAATATCTCACGAGTTTCCTTGACACCAAAATGTTGTAGGGTTAAGTGAACCTTTAGCCTTTAGCCTTGAGAACATGAATTTTGTCAATAGTCATCTAGATATGCAACTAGGTTAAGCGCTATACAAAAGTATTGTCATGCTATCAAATTTTTTCTTTTCCAAAAAAGTGTACTTTTCAATAACCAAAGTTGTTGAAGCTTCCAGTTTCTCTGTGTTTGTTTATTTCATATGCTCTTAATAGTCGTGAACCTAAATTTGAATAATGTTATCTTTTGTTAATTATTTTTTGTTTGAATTCAATAAAGAGATCAACCCATCTAAACCTTTGAAATGGTAGTTGATGAATTACCTTTTGAGCTATGTTTGTAATGACGTGTTTTGTTAATCTATTAAATAAATCATTCCAGCCTTTATGTTATTCGTTATTCAGACATTGCAGTTGCGTGAATCCAAACCAAAGATCATGCGCTTGGACTTGAACTTCTTGAATTAAGTTGCAGATTTTTATGAATGTTTAAGATTTGTAATTTGTAAAGGTTCGGGAGTTTAAATATCACATGCATTCGTATATATTTCAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGTAAATGCGTCTTGAGCCATCTTACTTGAAAGTCTGTTGATATATATCTAACATCAATTCTCTTTTTGTTTAAAAAAATAATAATAATTGTTCTTGGTTATTGATGAAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGAGCCTGAACTTTTGTGGTGCCTCAGGACCCTTTGTAAGGATATCGAAGAATTTGACTCAACTCATGCTAGCTCGAGTAAGTGATTCTGGAGTCTCAACTTTTGGGGGTACGTCTATTAAACCTGTTGCTGTCAATAGCAGCTAAAGTGCAGTGATTTGAAGAATCTCATACTTGCCGCAAACCACAGCAAGAATTTCTTTCCCTTCCCCTTGTAGGCGTGGATTTCTGTTATATCCAAATTATCCATAGAGTTAAGTAATGAGGTGCATGATGTGTGAGAGAATAAGTTGTCAAATTAATCTAGTACTTGGAGAGATGTTATCATGCACATAATATTATCAATGTATTGAAGGGTTTACTTTTTTCTTTTTCTTTTTTTTAATTTTTAAGT

mRNA sequence

CATCTTCCTTCTTCCACTACTGGAAATGCCTTTGCCTCCAAATCCCCAGTGAGTAGCGTGGGCTGAATTTGGGGCATTTTCAAAATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATCCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACACTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGTATCTAATGAAAGAATCAAGAGGACTACTAGTTCCAAGGCCCCAAATGTCATATGGATCAATGCAGAAGGGTCAGAAGATTTGCAGGGCACACATGGATAAATATTTTTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTAAACGTGGTTTATATTCCCCTGCCTTTGGCAGAGGAAGATAAGATGACAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTTACTTCAAGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGAGCCTGAACTTTTGTGGTGCCTCAGGACCCTTTGTAAGGATATCGAAGAATTTGACTCAACTCATGCTAGCTCGAGTAAGTGATTCTGGAGTCTCAACTTTTGGGGGTACGTCTATTAAACCTGTTGCTGTCAATAGCAGCTAAAGTGCAGTGATTTGAAGAATCTCATACTTGCCGCAAACCACAGCAAGAATTTCTTTCCCTTCCCCTTGTAGGCGTGGATTTCTGTTATATCCAAATTATCCATAGAGTTAAGTAATGAGGTGCATGATGTGTGAGAGAATAAGTTGTCAAATTAATCTAGTACTTGGAGAGATGTTATCATGCACATAATATTATCAATGTATTGAAGGGTTTACTTTTTTCTTTTTCTTTTTTTTAATTTTTAAGT

Coding sequence (CDS)

ATGAATTTCATGTATTTTATCAATGTTATTTACTTCAAGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGA

Protein sequence

MNFMYFINVIYFKDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA
Homology
[Close]
BLAST of ClCG02G024430 vs. TrEMBL
Match: A0A0A0KWZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAV DGWDSR LKIEKVIPPTWK NKPAGRILELCILHLAMSEITVIGTR
Sbjct: 274 LILRFTRKLLVAVGDGWDSRALKIEKVIPPTWK-NKPAGRILELCILHLAMSEITVIGTR 333

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDK 129
           HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS  A +K
Sbjct: 334 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

[Close]
BLAST of ClCG02G024430 vs. TrEMBL
Match: D7SLN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00170 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38
Identity = 85/110 (77.27%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAVVD W+S VL I+KV PP WK N+PAGRILELCILHLAMSEI V+GTR
Sbjct: 108 LILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWK-NEPAGRILELCILHLAMSEIAVLGTR 167

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGD-KQEV 132
           HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD++    T A +  QEV
Sbjct: 168 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLEGTGITRASETTQEV 216

[Close]
BLAST of ClCG02G024430 vs. TrEMBL
Match: A0A067JM20_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21521 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-37
Identity = 83/112 (74.11%), Postives = 94/112 (83.93%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAVVD WDS VL I+KV PP WK N+PAGRILE CILHLAMSEITV+GTR
Sbjct: 150 LLLRFTRKLLVAVVDKWDSHVLIIDKVSPPNWK-NQPAGRILEFCILHLAMSEITVLGTR 209

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI---KEIDSTHAGDKQEV 132
           HQIVINEA+DLAKRFCDG+APRIINGCLR+F+KD+    E  +T A  K EV
Sbjct: 210 HQIVINEAIDLAKRFCDGSAPRIINGCLRSFMKDLSGTNEARATDANQKVEV 260

[Close]
BLAST of ClCG02G024430 vs. TrEMBL
Match: B9GXX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20820g PE=4 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-37
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAVVD WDS VL I+KV PP WK N+PAGRILE CILH+AMSEITV+GTR
Sbjct: 198 LLLRFTRKLLVAVVDKWDSHVLVIDKVSPPNWK-NEPAGRILEFCILHMAMSEITVLGTR 257

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQE 131
           HQIVINEAVDLAKRFCDGA PRIINGCLRTF+KD+         D  E
Sbjct: 258 HQIVINEAVDLAKRFCDGAGPRIINGCLRTFLKDLSGASVAQTSDANE 304

[Close]
BLAST of ClCG02G024430 vs. TrEMBL
Match: W9RK01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.9e-37
Identity = 78/97 (80.41%), Postives = 87/97 (89.69%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ R TRKLLVAV D WDS V+ I+KV PP WK N+PAGRILE CILHLAMSEI+V+GTR
Sbjct: 188 LILRLTRKLLVAVSDQWDSHVIVIDKVAPPNWK-NEPAGRILEFCILHLAMSEISVLGTR 247

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE 120
           HQIVINEAVDLAKRFCDGAAPR+INGCLRTFVKDI+E
Sbjct: 248 HQIVINEAVDLAKRFCDGAAPRVINGCLRTFVKDIEE 283

[Close]
BLAST of ClCG02G024430 vs. TAIR10
Match: AT4G26370.1 (AT4G26370.1 antitermination NusB domain-containing protein)

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-35
Identity = 76/110 (69.09%), Postives = 84/110 (76.36%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           +V RF +KLL AVVD WDS V+ IEK+ PP WK + PAGRILE  ILHLAMSE+ V+ TR
Sbjct: 191 LVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWK-SAPAGRILEFSILHLAMSEVAVLETR 250

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGD-KQEV 132
           H IVINEAVDLAKRFCDG+APRIINGCLRTFVKD     +  A + KQEV
Sbjct: 251 HPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTSTPQALELKQEV 299

[Close]
BLAST of ClCG02G024430 vs. NCBI nr
Match: gi|659097953|ref|XP_008449897.1| (PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 9.6e-49
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAVVDGWD+R LKIEKVIPPTWK NKPAGRILELCILHLAMSEITVIGTR
Sbjct: 285 LILRFTRKLLVAVVDGWDNRALKIEKVIPPTWK-NKPAGRILELCILHLAMSEITVIGTR 344

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA 134
           HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DST A +KQEVRA
Sbjct: 345 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVRA 394

[Close]
BLAST of ClCG02G024430 vs. NCBI nr
Match: gi|700198860|gb|KGN54018.1| (hypothetical protein Csa_4G268020 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-45
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAV DGWDSR LKIEKVIPPTWK NKPAGRILELCILHLAMSEITVIGTR
Sbjct: 274 LILRFTRKLLVAVGDGWDSRALKIEKVIPPTWK-NKPAGRILELCILHLAMSEITVIGTR 333

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDK 129
           HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS  A +K
Sbjct: 334 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

[Close]
BLAST of ClCG02G024430 vs. NCBI nr
Match: gi|778692749|ref|XP_004149639.2| (PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-45
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAV DGWDSR LKIEKVIPPTWK NKPAGRILELCILHLAMSEITVIGTR
Sbjct: 210 LILRFTRKLLVAVGDGWDSRALKIEKVIPPTWK-NKPAGRILELCILHLAMSEITVIGTR 269

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDK 129
           HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS  A +K
Sbjct: 270 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 314

[Close]
BLAST of ClCG02G024430 vs. NCBI nr
Match: gi|297746508|emb|CBI16564.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 85/110 (77.27%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAVVD W+S VL I+KV PP WK N+PAGRILELCILHLAMSEI V+GTR
Sbjct: 108 LILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWK-NEPAGRILELCILHLAMSEIAVLGTR 167

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGD-KQEV 132
           HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD++    T A +  QEV
Sbjct: 168 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLEGTGITRASETTQEV 216

[Close]
BLAST of ClCG02G024430 vs. NCBI nr
Match: gi|225435806|ref|XP_002285757.1| (PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera])

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 85/110 (77.27%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 23  MVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKVNKPAGRILELCILHLAMSEITVIGTR 82
           ++ RFTRKLLVAVVD W+S VL I+KV PP WK N+PAGRILELCILHLAMSEI V+GTR
Sbjct: 178 LILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWK-NEPAGRILELCILHLAMSEIAVLGTR 237

Query: 83  HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGD-KQEV 132
           HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD++    T A +  QEV
Sbjct: 238 HQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLEGTGITRASETTQEV 286

The following BLAST results are available for this feature:
BLAST of ClCG02G024430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWZ5_CUCSA1.2e-4590.57Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1[more]
D7SLN6_VITVI2.4e-3877.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00170 PE=4 SV=... [more]
A0A067JM20_JATCU1.5e-3774.11Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21521 PE=4 SV=1[more]
B9GXX5_POPTR2.0e-3774.07Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20820g PE=4 SV=2[more]
W9RK01_9ROSA5.9e-3780.41Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1[more]
BLAST of ClCG02G024430 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26370.12.9e-3569.09 antitermination NusB domain-containing protein[more]
BLAST of ClCG02G024430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097953|ref|XP_008449897.1|9.6e-4990.99PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo][more]
gi|700198860|gb|KGN54018.1|1.7e-4590.57hypothetical protein Csa_4G268020 [Cucumis sativus][more]
gi|778692749|ref|XP_004149639.2|1.7e-4590.57PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus][more]
gi|297746508|emb|CBI16564.3|3.4e-3877.27unnamed protein product [Vitis vinifera][more]
gi|225435806|ref|XP_002285757.1|3.4e-3877.27PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006027NusB_RsmB_TIM44
IPR011605NusB_fam
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006353DNA-templated transcription, termination
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G024430.1ClCG02G024430.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006027NusB/RsmB/TIM44GENE3DG3DSA:1.10.940.10coord: 26..119
score: 2.8
IPR006027NusB/RsmB/TIM44PFAMPF01029NusBcoord: 29..115
score: 4.1
IPR006027NusB/RsmB/TIM44unknownSSF48013NusB-likecoord: 27..118
score: 7.72
IPR011605NusB antitermination factorPANTHERPTHR11078N UTILIZATION SUBSTANCE PROTEIN B-RELATEDcoord: 26..131
score: 7.3
NoneNo IPR availablePANTHERPTHR11078:SF3ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEINcoord: 26..131
score: 7.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G024430Csa4G268020Cucumber (Chinese Long) v2cuwcgB292
ClCG02G024430Cla97C02G050690Watermelon (97103) v2wcgwmbB138
ClCG02G024430Bhi10G000403Wax gourdwcgwgoB283
ClCG02G024430CSPI04G12480Wild cucumber (PI 183967)cpiwcgB303
ClCG02G024430Lsi10G009140Bottle gourd (USVL1VR-Ls)lsiwcgB054
ClCG02G024430CsGy4G011760Cucumber (Gy14) v2cgybwcgB271
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G024430Melon (DHL92) v3.6.1medwcgB370
ClCG02G024430Silver-seed gourdcarwcgB0493
ClCG02G024430Cucumber (Chinese Long) v3cucwcgB303
ClCG02G024430Cucumber (Gy14) v1cgywcgB258
ClCG02G024430Cucurbita maxima (Rimu)cmawcgB489
ClCG02G024430Cucurbita maxima (Rimu)cmawcgB541
ClCG02G024430Cucurbita moschata (Rifu)cmowcgB490
ClCG02G024430Cucurbita moschata (Rifu)cmowcgB538
ClCG02G024430Melon (DHL92) v3.5.1mewcgB376
ClCG02G024430Watermelon (97103) v1wcgwmB197
ClCG02G024430Cucurbita pepo (Zucchini)cpewcgB255
ClCG02G024430Cucurbita pepo (Zucchini)cpewcgB644