Csa4G268020 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G268020
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Antitermination NusB domain-containing protein; contains IPR006027 (NusB/RsmB/TIM44)
Location	Chr4 : 10549369 .. 10560469 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCAACTTCTTTTCCTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCCCATGATGCTGACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGTTTCTTTTTCCTTTGCCCTTCCACTTCTTCTGTTCTCTATTCTTTACCTACTCCCCTCTTTCCTTTTTCCATTTAAACTCTGCTTTCTAAATCTTGCTCACCATGTAAGGGGAGTTAAGGAATTAGTGGTAAATCTTGGGTAAATTCATGCTAATCATTTTTTAGTTTCTTATTTGAATTTGAATTCCTTTTTAGTTTCATTTTGGGATTTCATTTTCCATATTCTGGAGTCCTCTCTCGTGTACCTTTACAACTTCGATTCATATTAAGTTTTGAAAGTTGATAATTGTATAATTTTCTCCTTTGGGTCCTTTAGGCTACATCAGTTCACCAACAACAATTGACCTCTCTGTTAATTTCTCACGCTTAGCAATTTGAATTGTGAAATAGAGGCGGTAGGATGTGGCATGCTTCATCACTTCATACTAGTTACTCCTTCTAAATACTTGCATCATCTTTACAACTTTCCAGAATGGTGGATGCAGGGTCAGTGAACATTTGCTTTAAATATCAGTTTTGGATATTTCCTTAGTAGTCTAAAATTGGACTATACCAGATGTGGCACCTGGATGAGCACCGAGATAACACGACCACCATCTTATACTGGTCAACAGTAACGAACTTGGTTTTATGTAATTCAACCTATGGTTACTATGTAGAAAAACACTACTGAAACTAAAACCTTGTTCTTCCTGATACTCTTTCACTTGCGAGCTTCGAGTTGCTCCTGAACTCAACAAGCTTAAGAGGTTAAGGGCTGATTGGGGAGAGGAGTTGGGTGGGGTGGAGTTGTTTGGCCGCAGGAGTTATTAAACACATTGTAGATCACCCGATTCATTAGCATCAATTTCATGATTTATTAACTCCTTACATTGTGGGTCCATAACTAAACAACTTTATTTTTCATTCTCTCGTGGGTTATGGCAAATTTAGTGAGTAATTTATATTATTGACACTCTAGACAATTGGATATTAATTGAGACAACTGCTAGAGGCAAGGAAATTGTCATATTGTTGTTTTGCCTAGTTTTTCTTAAAGAAAGGAAAAAGGGAAAAGAAAAAGAAAAGATATAGGCTCCATGATTACTACATCTTTCCAGAAAACATGACTTAACTTAGCATGCTTAGTTTTCATTCTTGCTCATCCTCTCTTTTCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCGAGAGCTGCTAGAGAGCTTGCTTTGTAAGATCCACTACTTCCTTTTCACCTTTTTTTTTCTCCAACATATGAATATCTCCTCTCTACCTTTTACGTATTCAAAAAGTTGGCTTACTTGCCAAGATATGGGCTAAGAATTTGTTTAATTTCTAGACTTGTGATAAATTCTAATTCTACTAGATTATTCAATGGCAGGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGGTAATCTATGGTAGAGACATGATACATGGTTTTCTGTTACCCCATATACTATTTGGTGTGTGTGTTTTAATATAAAAAAGATCGTGCTGGGGAAATAGATGTCACTCAAATATAAAATCCTGCTTGCTTTTTTTTCTTTGTTTGTACAATTCAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGGTAAACAATTATTTGACCTTCATATAACACACACACACACACATTATTTCTTCTTCTTAATTCACCCATTACTTTATATTAAAAACATGATTGGCTAGAAGAGACAACTATTCATTGAAAAGATGAAAAGTGTAAAAGAGAGACTAATGCTCAAAAGATACAAAATCTCTCAAAGGAGTAAAAAGGAAAAAGAAAAGCAGAAAAATGTTAAGTTTCCACAAACCATAACAAATGATTGATTTACTTAAAAGCTTAACAAAGAACTAATAGATTAACATCAAGCATCGGTATGAACGTTGAGTTGCCCATAGAAGTTGGAGTAGATCTCGAAATACTGCAAGTGTTGCTGACAAATTACGATCTTTAGTTTGGTTAACTTTATTTGACAAAGAAGTTTCTTCTTCTGAGTGTGAACCAATTCTTTGTCAAGATGAGATATCCACGTTATATCAATACTGTATTAGGTTCCATTTTTTTTTTTTTTTTTTTTGATGAGAAACATATGTATTCATATAACAAAATAGAACAACCTAAGGGCAAGGGACAAAAGGGCCCTCCCCAGAAGAAACTAAAAAATGATGGCGTTCCAATTGCTGAATATCATTGAAAGACTATAATTACAAAAATGTTTGGTGTAATTCATACTCCACCAAGAAGTTGTGTGTTGCAACACCGTCCAAAAAGAATCAAAAGAATTATAGTCATTCTAAAAAATTCTTCTATTCCTTTCTTTCCAAATGTACCACAAAAGGGACCGAGTAGCACATCTCCATAACATGTTTCTTTTCAGGCTATAACCTCTAATGTTGAGCCCTTCAATCAACCAGCTATCAACCTTACTAGGAAGACAAAGCTCCAAATAAAAAATTCTAAACAAAGTGTTCCAAGCTTTCCTAGTAAAAAGACAGTGCAAAAATATGTGGTCCAAGGTTTCCTCTCCTTTGAAGCAAAGGCAACACATCGAGGGGCTAAGCACAGTGTACTGTATTAGGTTCCATAAGAAAGCTCTATATCATGTGAGAAAAGAGCTAAAGATTTGATTTGAGAAGGGCCATCATCAACTTGATTGTGCAAATTGACTCCCACCTTGATTTTTTGAAACGGGGTTTAGAGACCTGTTTTTTGAGCCATCATTCATCAGTAGCGATCTTCATCAAACTTGGCATTTTTCCTTTTAGACGTGCTCCATCATTTTGTCTCCTTGCTGCCTTTGTACTAGGGCTGATTGATGTAGCCTAAGCAACCTCAAAGAGTAATTATCTAAGCACCAAGATTGTTAATCTTTTTATTAGAATGGATAATGTGCTTCATACAAGAGGATAATACTCCTATTTAAGAGTTTTATTACAAGTGATGGGTAAAAATGGAATTAACCTAGAATATTATCTAATTTCCCAACTAACCCCTATTCTTCTTACATCATTCTACCCTTCCAAAAAGAAAACCTGTTCTCGAGTTTTAAGAAGGAAAAAATTATGAAGCAAATAATTAATGAAATAAACTTGTTCAATGGAATATGACCAAACCAACCTCCGATGTTTTATACAAAAATATTATGATAAATTAGATTAAGTTGAGACAAAAAATCCAATATTTCCACCAAAAGAGGAACCTCTCCATTGACCGTAAAGCCAAAAAAGATCTTTTCCTTCATGCTCATTCAAAACCACATTCAATGGACCAATCACTCAAAGTCTAGAACACCACATTCCAAAGAGAATCGTTCAAGAATCATGTCTTCTCTATCATGCGCTTCAAGTTCTTCAACGATTCGATGATCCATTTCGACTACAATCAATGTGTCATTTTCTTATTTGATTTTTGCTTGGTGTTCGTCCTTTCTTCCAATCTTCTTAGTTGGATTTTTCTTCACTTGAGACTATTTCCAGATCAACATTTTCAAATTCTTGTTTTCCTTCAATTTTATCGTCCAGATTTTCTATTTGAAAATTTTCCAACTATGATTCCTTTGTTTTTTCTTCCGTATGTGAAACCAATTTGTTCTTGAAATCTTGCAAATGAATTGATAGTTGATCGATATGTGAGTCATTTTCCCCAATATGTTGGATTTCTTTTGTTATTTTCTTTATTTCCTCCAGTGCTACGGCCTAAGGGATCAAAGTAGTCATTTTGTTTTTGTTTTTTTTTCTCTCTAATCGTTCTTTGGATAAAAAAAAGAAGAAAAAAGTAGTCATTTTGTTAGGGAATTGAATATGTTTAAATCTCATAGTGGGTATAAGACTCATCCATTGACTTTCTTGAATCAACCTTTCTTGATCGTGTTTCATAACCAAAAGAGTAATTTTGAGTCTTGAGCGTTCTTCTAGGGTTGTAAAAATCCATTCTTGACGATTCTTTAGTTCATTGAACTCCCAAGTTCTACGTTGATTTCTTAAAAAATGGGTTTGATCGAATCATTGGGCCGTTTGTCGATATTTCCGTCTTCTTATTCCATCCCAAGCTTTCTTAGAAATATCATCGGAGTCACTAGAATCACTAGAATCAAATTTCCTTTGTGGATAATGATAGGTTCTTTGAGAAGATTGTTTAGTGATATATAATTAAATTTTCCTTCAACCACTAGCTTAAGCTTTTGGGTGAATTGGTGGTTTAATATCGTATCAGAGCAGGTGGTCCAGGAGGTCCTATGTTTAAGCCTCTACATTGTTGTTTCCTCCCCAATTAAAATTAATTTCCACTTGTTAGGCCTTTCAGATATTTCGAGCCCACAAGTAAGGGGGAGTGTTAGTAATTGTAATTAAATTTGCCTTCAACCACTAGCTTAAGCTTTTGGGTGAATTGGTGGTTTAATAGATTGAACATAGGTAAAAATAGCAAGTTGAAATTCTTCTTCGGAATCACTTTAGTCAAAATTCCAGCACTGTTTTTGGAAGTAAAATTGATTTTCTTGCCTATACAAACTGCTGTGTTTTTCTTGGACATCTTCTTTGATTGGTAATAGTCCTTTCCTCCCCAATTTCTTCTTTCTTTCTTGAAATTTTAAAGGTTCCCCCAAATTAGATGTGTGTTCGACAATAAGCACAACTCATGAAGCTCCTTCTAGTGATTGGCGTCACCAAAAGTTTCTCGATCTTCCATCGTTTGTAGTCAACGTTGGCCCAGGTGGCCGCTCTGAAACTAAAATGATGTAGTCTAAGTAACCTTAAGGAGTAATTATCCAAGAACCAAGACTGTAAATCTTTTTATTAGAATGAATAATGTGTTTCAGACAAGAGGGGAAGGCTCTTATTTATAGAGTTTATTACAAGTGGTGGGTAGAGAGGGAATTAACCTAGAATAGTAACTAATTACCCAATTAACTTCTAGTCTTCTTACATTAGGGGCTCTCTGTTTTTTTTTTTTGTTTTAATCCAACACATTTGGTTGTACTTCTTTTCATTTTGTCTACTTCTTTTTCAGTTGTAATGTTTCCCTCTCTTTTGGGCTTCTTTTTTATTCTTTTCATTTCGTCTACTTCTTTGGATTATTTCATTCATCAATAAATTAATTTTTTATTAAAAAAATCCAACCGAATCCATAATTAGGGACTAAGGGTATTTCAATTTTTCCCATGTTTTTACTATAATTGCTAATTCAGTATTGTCTAGCCTCCAAGTCCTCTTTTATTGCGGTTAGTATTAAAATTCTGTTTTCTGCATGACTTACCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTAAACTTGGTTTATACTCCCCTACCTTTGGCAGAGGATGATAAGATGAAAATTTTGTATCACTTTCATCTATTTTATCAATATTATTCACTTTAAGAATGAAATAAGGCAAGCGATCTTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGAAAAAAGCTTTTTTTTGTTTACTATTTTATTTTGTGATTCTCTTCTTTATGTTGTTATCATGTGGTTAGAATACTCCTCCTGAATTGATAGGTGGAGGATTATGTCCCTCTCCAAAGGGGGTAGGCTAACTCTTATGCAATTGGTTCTCAACAGCCTTCCTTGTTACTTATTTTCCCTTGCACAAGCCCCGGTTGGTGTTATCAATAGACTGGAAAAGATTATTTGAAATTTTGTTTGGATAGGGTTTATTAATTCGGTTTTCCACATTGTCAAATGGGATTGTTCTTCTCGCCTAATCTCTTATGGTGGCCTTGAGATTGGATCATTTAGGCAAAAGAACACTGCTCTTGTCAATAAATGGCTTTGAAGGTTTAGTAAGGAAGAAACCACTTAATGGAGGCGCTTAATTGTGGCCATTTACCGCTTAGAGGAGAGGGTGGTCTACTAAAGCTCCGAACAGAGGAAGGTCTTATAGATTGTGGGCCGTTATTTTGAAGCATAAGGAGACTTATAAATTCACAGCTTTTTTGTTGGGAGAGGGAACAAAAATCAGATTCTGGAAAGATAGTTGGTGTGGCGTGGAACCGCTTGCATAAAAATTCCTCTACCTTGTTCTCCTTGGCACTGAACAAAGATGCTTTTGTGTCTGAATGTTGGTGTAATGTTACTCATTCGTGGAACTTGGGCCTTAGAAGAAATGTGCTCGATAATGAGCTTGACAACGTGGCCTCAATTCTAAAAAATTTCCATCCTTGGCCCCCTCAGATGGTGGTGATAGTCTTAAATGGACTTCTAACGTTAATGGCAGCTTTACTACAAAGTCTACTTTCCGTAATTTTACCAAGAGATCTCCCTCCATGCTGCTCCTCCGATTCACCACATGTGGAAAACTAAAATCTCGAAAAAGGTGAAATTCTTCTTTTGGTCGCTCGCCTATAGAAGTCTAACACTCGTGAGAAAATTTAAAAAAAAAAAAAAAAATCCAACACATATGCTCAGCCCCTCAATGTTCTGTTCTTGTTTCAAAGATGAGGAGACCCTAAACCACTTATTTTTGCACTCTCTTTACTAGGAAAGCTTGGAACAATTTGTTTAGAATTTTGATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGTTGGATGCTGGAAGGGCTTAACATTAGAGGTTATAGTTCGAAAGGAAACATCTTATGGAGATGTGCTACCCAGTTTCTTTTGTGGTGCATTTGGAAATAAAGGAATAGTAGAATTTTTTAAGATAGCTATAACTCTTTTGATTCTTTTTGGACTGTGTTGCAACACACAACTTCTTAGTGGAGTACGAATTACACCAAAGACTTCTGTAATTACAGCCTTTCTATGATTTTCAACAATTGGAAGGTGATTATTCTTTAGCTTCTGTTGGGGAGGGCCCTCTTTGTTTCCAAATTTATTTAAAGATTTTGATTGTTCAATCTTTTAAAGTGAAAGTTGCATTTCTGCTAAACATCATCGACCCAAACCTTGTAAGGGTTCCTCGCCTTTTTACTTCATTCACACTAATGTGTGGGGTCCGTCTAGAGTGTTGGCTTATAGTGGTAAGCGTTGAGTTGGGTTGGTTTGTTACCTTGATCACACTTGTTTAACTTGATTTTATCTTTTAACAAAAAAAATGAAGGTAGAAGAGGTTTTTGTTTGGTTTTACAATATGATTGAGACCTAGTCTCAAACTAAAATCCGCATTCTTCACTCTGATAATAGTACTGAATATTTTAACAAACAATTAACTTATTTTTTGCAAGATAAGGGTATTTTTCCATCAAGCTACATGTCAAGATACTCTTTAGCAAAATGACGTCGTTGAGCGAAAAAATAGATATTTACTTGAAGTTGCTTGTGCCCTTATGCTTTCTATGCATGTACCAAAATATTTGTGTGGTGATGCAGTCCTTACTGCTGCATACCTCATAAATCAAATGCCAACCAAGATTTTGAATTTTAAAACTCCTTTGAGTCGCTTCAAAACGGGTTTTTTCCTACTGTTAGATTGTTTTCTGACTTAACAATAAAAGTATTTGGGTGTATTGTTTATGTTCATATTCTTTACCCTATACTAACTAAACTTGATCCTTGAGCCGTTAAATACATTTCTGTATGCTATGTCTCCCATAAGAAGGCTTTCAAATGTTTTGACCCTTCAACCAAAAAGTTTTTGGAGAGTATGGACGTGCCTTTCTGTCTTCAAAGGGAGACATCTAACCTCGAAGATAATTTCTAGGACACTTCACTTACCCCAGACATCATTGGTCCTGAAATTATGAGTTATAATCCCTTGATGCCAAGTGTGGAAAGTTCTTCTTTAGGGAAGAAACACTACAAAAACCTGAACTTCAGATTTATACTAGAAAAACCTTGCCTCAAAGTAATTGAGAATAAACAGTTGATCTATCATAGGACCAATCTAATTCTTCGATGAATGATTCTGCAGATCTAGGTAACATACATCTCCTTCTCATAATTCTCCCAGTACTTCTCATAATTTTCCTAGTTCTCCTTACCCGATGTCTCTAATCTTGACATTCCAATTGCCCATAGGAAAATCACCCGTAAAGGTGCCAAATATCCCATTGCAAACTATCTTTCTTTATCACAGATTATCTAACAGTCATAAAGCCTTCACATCCAAAATAAACCACCTATTTGTTAGAAGGAATACACAGGAGGCCCTAAATGATTTGAATTGGAAAGTGGCAGTAATGGAAGAGATGAATGCACTGAAACAAAACTGCACATGGGACATAGTTGAACTACCTAAAAACAAGAAAACGGTTGGATGTAAGCGAGTGTTCACTGTATAATGTAAAGCTGATGGTAGTATTGAAAGGTACGAGGTCAGATTGGTTGCTAAGAAATTTACTCTGACCTATGGAGTTGATTATCAAGAAATATTTGCTCCAGTTGCTGAAATTAATTCCATAAGAATTTTGCTACATGTTGCAGTTAATTTTGATTGCCACTTTATCAACTGGATGTTAAGAATGACTTTCTCAATTGGATCATGAAGAAGAGGTATTTATACGTTTGCTACCTGGTTTTGAGGTGATCTCAGGATTAACAAAGTGTGAGTTAAAGTAATCATTATATGAGTCTCCTAGAGTCTGGTTTGAACGTTTTAAAAAAGCAGTCACAAGCTATGGATCTAGTCAAAGTCAAGTCAATCGTACTATGCTCTATAAACATACAGGAAATGACAAGGTTATGTTTTTGATAGTTTATGTTCATGATATCATTTTTGATGAGACATGACTTTCTTGAAGAAAAAGTTAGTTGATGATTTTCAAATCAGACACCTAGGAACTATGAAATATTAACCAGGCATGGAGTTTACTAGGTCCAGAAGTGGCATTCTTGTCAACCGAAGGAAGTATATTTTTTATCTACGGAAAGAAATAGGTTTACTTGGCTGTAGGGTGGTTGAAACTCCTATTAAGCAGAACTTGAAATTAGAAGTTGTTGAAAAAGAAATAAAAGAAAAAGAGAAGTATCAGAGATTTGTGGGGAGACTTACATATCTCGATCACACACGTCCTGACATCGCTTTCGCAGTGAATACTTAGTATGGGAAGTCAGTTCATGCATGCTCCTGGACCAGCTCACTTTGATGTTCACAGAATTCTAATATATTTGAAAAGTACTCTAGGAAAAGGCATATTGTTTTAAAAACATGACCACTAAATGTCGAAGTGTACACTGATACAGATTGGTTAGGTAGTACAACTGATAAAAGAGCCACTTCTGGTTATTGCTTTTGTTGGAGGAAATTTAGTTACTTGATGAAGCAAAAAATAGAGCATGGTTGCGAGTAGCGCAGAAGCAGAATTTAAAGCATCAACCCATGGTATTTGTAAGGGCATATGGATAAGAAGACTATTGGAAGAATTGAGATTCTCCCAGAAAATGCCTATGCTCATTTATTGTGATAACAAGGCAACAATTTCCATTGCCCACAGTCCAGTCCTTCATGATAGGACGGAACATAGTGAAGGTGATAAACACTTTATGAAGGAAAAGATTGTTCAAGGGATAATATGCATCCCTTATCTTTTGAGAACAAAACAAATCGCAAATGTGTTAACTAAAGGTCTTCCAAAATAGCTATTCAACAACTTAATTGAAAAGTTGGCTATGGATGATATCTTAACTTGAGGGGGAGTGTTGATTATTTCCTTTATTGTTAATATTTTCATTGTATTAAAGAAACATTTGTGTATTTGTTTTTTCCTATTTTGTATTGGGTATTTCTTCTATTTAATAAAACCCTTTCTTTCGAAGAGAAATAACAGAAAATACATTCTGCACAACATGTTTTATTATTCTATTCCATAAATCATTCCATCTTCAGACATATCAGTTGCACGGATACAAAGCAAGGATCATGCACTTGGACTTGAACTTCTTGAATTTGCAAATTTTTTAGAATGTTTAAGATTTGTAATAGTTAAGGAGATTAAATATCTCATGCATTCGTATATATTTCAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGTAAATATGTCTTAAGATGTTTTACATGAAGGTCAAAACCAACATCTCTTATGTCTGTTTGATATCTGTCTAAGATTACTCCCTTTTCTAACATAAATTATTTTTTTGTTAAAAAAAAATATATCGTTCTTGGTTATTGATGAAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAA

mRNA sequence

ATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCAACTTCTTTTCCTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCCCATGATGCTGACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCGAGAGCTGCTAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAA

Coding sequence (CDS)

ATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCAACTTCTTTTCCTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCCCATGATGCTGACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCGAGAGCTGCTAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAA

Protein sequence

MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK*

Homology

[Close]

BLAST of Csa4G268020 vs. Swiss-Prot
Match: NUSB_PEPD6 (N utilization substance protein B homolog OS=Peptoclostridium difficile (strain 630) GN=nusB PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-06
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1


Query: 296 KIEKVIPPTWKNKPAGRI--LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAP 355
           KI+++I    KN    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 356 RIINGCLRTFVKDI 368
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

[Close]

BLAST of Csa4G268020 vs. TrEMBL
Match: A0A0A0KWZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1)

HSP 1 Score: 762.3 bits (1967), Expect = 2.8e-217
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1


Query: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60
           MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60

Query: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120
           FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF
Sbjct: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120

Query: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180
           HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP
Sbjct: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180

Query: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240
           RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE
Sbjct: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240

Query: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300
           TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
Sbjct: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300

Query: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360
           IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
Sbjct: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360

Query: 361 RTFVKDIKEIDSMPAREK 379
           RTFVKDIKEIDSMPAREK
Sbjct: 361 RTFVKDIKEIDSMPAREK 378

[Close]

BLAST of Csa4G268020 vs. TrEMBL
Match: W9RK01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.8e-97
Identity = 183/261 (70.11%), Postives = 210/261 (80.46%), Query Frame = 1


Query: 111 HISGICQFPFHASSIVPHIKDS--MPRFCCQASLRASTSFSENRVAEERSSISISSIEMI 170
           H S    F    S  +PH   S  +   C +ASLR+ST F E       +S S SS + +
Sbjct: 24  HFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVETPNTHNSNSTSSSS-DAL 83

Query: 171 PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYN 230
           PK D+ G+FCSPRAARELALSIVYA+CLEGSDPVRLFEKR+NARRE GYEFDK SL++YN
Sbjct: 84  PKTDRFGRFCSPRAARELALSIVYASCLEGSDPVRLFEKRINARREPGYEFDKESLLQYN 143

Query: 231 HMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGD 290
           HMSFGGPPVTVET+EE +EL R D+++S IEAE+L APPK+VYSKLILR TRKLLVAV D
Sbjct: 144 HMSFGGPPVTVETLEEEEELTRNDKKESDIEAEVLGAPPKLVYSKLILRLTRKLLVAVSD 203

Query: 291 GWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFC 350
            WDS  + I+KV PP WKN+PAGRILE CILHLAMSEI+V+GTRHQIVINEAVDLAKRFC
Sbjct: 204 QWDSHVIVIDKVAPPNWKNEPAGRILEFCILHLAMSEISVLGTRHQIVINEAVDLAKRFC 263

Query: 351 DGAAPRIINGCLRTFVKDIKE 370
           DGAAPR+INGCLRTFVKDI+E
Sbjct: 264 DGAAPRVINGCLRTFVKDIEE 283

[Close]

BLAST of Csa4G268020 vs. TrEMBL
Match: M5WJ39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 9.3e-96
Identity = 187/259 (72.20%), Postives = 213/259 (82.24%), Query Frame = 1


Query: 111 HISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPK 170
           H+ G+ Q P  A+     +  S PR     SLR ST F+ +   E+ +S    S EM+PK
Sbjct: 43  HLLGLIQRPLLAT-----VSLSSPR----TSLRTST-FTLDEALEKPNS---DSREMLPK 102

Query: 171 VDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHM 230
           +DKSG+FCSPRAARELALSIVYAACLEGSDPVRLFEKR+N RRE GYEFD+ SL+EYN M
Sbjct: 103 IDKSGRFCSPRAARELALSIVYAACLEGSDPVRLFEKRMNVRREPGYEFDRASLLEYNPM 162

Query: 231 SFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGW 290
           SFGGPPVTVET+EEADELLR DE++S IEAE+LAAPPK+VYSKLILRFTRKLLVAV D W
Sbjct: 163 SFGGPPVTVETVEEADELLRNDEKESAIEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKW 222

Query: 291 DSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDG 350
           DS  L I+KV PP WK++PAGRILELCILHLAMSEITV+ TRH IVINEAVDLAKRFCDG
Sbjct: 223 DSHVLVIDKVAPPNWKDEPAGRILELCILHLAMSEITVLETRHPIVINEAVDLAKRFCDG 282

Query: 351 AAPRIINGCLRTFVKDIKE 370
           +APR+INGCLRTFVK I+E
Sbjct: 283 SAPRVINGCLRTFVKGIEE 288

[Close]

BLAST of Csa4G268020 vs. TrEMBL
Match: A0A059D8I6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03588 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.8e-94
Identity = 177/241 (73.44%), Postives = 200/241 (82.99%), Query Frame = 1


Query: 137 CCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACL 196
           C +ASLR S    E  V   R S++ +  EM+PK+DKSG+FCSPRAARELALSI YAACL
Sbjct: 64  CSRASLRTSVLAVEEAVERSRGSVAPAK-EMLPKIDKSGRFCSPRAARELALSIAYAACL 123

Query: 197 EGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDS 256
           EG DPVRLFEKR+N RRE GYEFDK SL+EYNHMSFGGPPV  +T EEADEL++ DE++S
Sbjct: 124 EGFDPVRLFEKRMNMRREPGYEFDKASLLEYNHMSFGGPPVITDTTEEADELMQIDEKES 183

Query: 257 TIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILEL 316
            IEAE+L+APPK+VYSKLILRFTRKLLVAV D WDS  L I+KV P  WK  PAGRILEL
Sbjct: 184 AIEAEVLSAPPKMVYSKLILRFTRKLLVAVMDQWDSHVLVIDKVAPENWKMAPAGRILEL 243

Query: 317 CILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAR 376
           CIL LAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLR+F+KD++   S PA 
Sbjct: 244 CILRLAMSEITVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRSFIKDLEATHSPPAS 303

Query: 377 E 378
           E
Sbjct: 304 E 303

[Close]

BLAST of Csa4G268020 vs. TrEMBL
Match: A0A067EH40_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 8.7e-94
Identity = 172/239 (71.97%), Postives = 203/239 (84.94%), Query Frame = 1


Query: 130 KDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALS 189
           ++  P   C A   A+ +  E       S ++ S+ EM+PK+DKSG+FCSPRAARELAL 
Sbjct: 49  RNERPNVSCSA---AAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALL 108

Query: 190 IVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELL 249
           +VYAACLEGSDP+RLFEKRLN+RRE GYEFDK+SL+EYNHMSFGGPPVT ET+EEADELL
Sbjct: 109 VVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELL 168

Query: 250 RKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKP 309
           R DE +S IEAE+L+APPK+VYSKL+LRFTRKLLVAV D WD+    I+KV+PP WK++P
Sbjct: 169 RSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQP 228

Query: 310 AGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIK 369
           AGRILEL ILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV++++
Sbjct: 229 AGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 284

[Close]

BLAST of Csa4G268020 vs. TAIR10
Match: AT4G26370.1 (AT4G26370.1 antitermination NusB domain-containing protein)

HSP 1 Score: 318.2 bits (814), Expect = 7.1e-87
Identity = 157/220 (71.36%), Postives = 180/220 (81.82%), Query Frame = 1


Query: 149 SENRVAEERSSISISSIEMIP--KVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFE 208
           S  R A    +IS   ++ +P  K+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFE
Sbjct: 64  SPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFE 123

Query: 209 KRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAP 268
           KR+NARRE GYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DE++S IEAE+L+AP
Sbjct: 124 KRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAP 183

Query: 269 PKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEI 328
           PK+VYSKL+LRF +KLL AV D WDS  + IEK+ PP WK+ PAGRILE  ILHLAMSE+
Sbjct: 184 PKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEV 243

Query: 329 TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 367
            V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD
Sbjct: 244 AVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKD 283

[Close]

BLAST of Csa4G268020 vs. NCBI nr
Match: gi|700198860|gb|KGN54018.1| (hypothetical protein Csa_4G268020 [Cucumis sativus])

HSP 1 Score: 762.3 bits (1967), Expect = 4.0e-217
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1


Query: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60
           MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60

Query: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120
           FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF
Sbjct: 61  FKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPF 120

Query: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180
           HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP
Sbjct: 121 HASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP 180

Query: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240
           RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE
Sbjct: 181 RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVE 240

Query: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300
           TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
Sbjct: 241 TIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV 300

Query: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360
           IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
Sbjct: 301 IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 360

Query: 361 RTFVKDIKEIDSMPAREK 379
           RTFVKDIKEIDSMPAREK
Sbjct: 361 RTFVKDIKEIDSMPAREK 378

[Close]

BLAST of Csa4G268020 vs. NCBI nr
Match: gi|659097953|ref|XP_008449897.1| (PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo])

HSP 1 Score: 697.2 bits (1798), Expect = 1.6e-197
Identity = 351/389 (90.23%), Postives = 360/389 (92.54%), Query Frame = 1


Query: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSA 60
           MSLAPPTSLY YSSHSHPLPKSHLSSFTQRSHPN F + F FHLSFSTSFSTLHS K SA
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKSHLSSFTQRSHPNLFPVRFLFHLSFSTSFSTLHSFKSSA 60

Query: 61  FKTDTGLGDSHDA-----------DQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFS 120
           FK D GLGDSHDA           +QPH LKFAPGASAHKTRLF VGDKVITTRPNFHFS
Sbjct: 61  FKIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRPNFHFS 120

Query: 121 YHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIP 180
            HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IP
Sbjct: 121 NHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIP 180

Query: 181 KVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNH 240
           K+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNH
Sbjct: 181 KIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNH 240

Query: 241 MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDG 300
           MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DG
Sbjct: 241 MSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDG 300

Query: 301 WDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD 360
           WD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD
Sbjct: 301 WDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCD 360

Query: 361 GAAPRIINGCLRTFVKDIKEIDSMPAREK 379
           GAAPRIINGCLRTFVKDIKE DS PAREK
Sbjct: 361 GAAPRIINGCLRTFVKDIKETDSTPAREK 389

[Close]

BLAST of Csa4G268020 vs. NCBI nr
Match: gi|778692749|ref|XP_004149639.2| (PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus])

HSP 1 Score: 607.8 bits (1566), Expect = 1.3e-170
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 1


Query: 75  QPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMP 134
           QPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMP
Sbjct: 11  QPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMP 70

Query: 135 RFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAA 194
           RFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAA
Sbjct: 71  RFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAA 130

Query: 195 CLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDER 254
           CLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDER
Sbjct: 131 CLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDER 190

Query: 255 DSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRIL 314
           DSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRIL
Sbjct: 191 DSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRIL 250

Query: 315 ELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMP 374
           ELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMP
Sbjct: 251 ELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMP 310

Query: 375 AREK 379
           AREK
Sbjct: 311 AREK 314

[Close]

BLAST of Csa4G268020 vs. NCBI nr
Match: gi|703124582|ref|XP_010103088.1| (hypothetical protein L484_005067 [Morus notabilis])

HSP 1 Score: 363.2 bits (931), Expect = 5.4e-97
Identity = 183/261 (70.11%), Postives = 210/261 (80.46%), Query Frame = 1


Query: 111 HISGICQFPFHASSIVPHIKDS--MPRFCCQASLRASTSFSENRVAEERSSISISSIEMI 170
           H S    F    S  +PH   S  +   C +ASLR+ST F E       +S S SS + +
Sbjct: 24  HFSPAFSFSLSFSLSLPHSSSSQSLSLLCPRASLRSSTFFVETPNTHNSNSTSSSS-DAL 83

Query: 171 PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYN 230
           PK D+ G+FCSPRAARELALSIVYA+CLEGSDPVRLFEKR+NARRE GYEFDK SL++YN
Sbjct: 84  PKTDRFGRFCSPRAARELALSIVYASCLEGSDPVRLFEKRINARREPGYEFDKESLLQYN 143

Query: 231 HMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGD 290
           HMSFGGPPVTVET+EE +EL R D+++S IEAE+L APPK+VYSKLILR TRKLLVAV D
Sbjct: 144 HMSFGGPPVTVETLEEEEELTRNDKKESDIEAEVLGAPPKLVYSKLILRLTRKLLVAVSD 203

Query: 291 GWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFC 350
            WDS  + I+KV PP WKN+PAGRILE CILHLAMSEI+V+GTRHQIVINEAVDLAKRFC
Sbjct: 204 QWDSHVIVIDKVAPPNWKNEPAGRILEFCILHLAMSEISVLGTRHQIVINEAVDLAKRFC 263

Query: 351 DGAAPRIINGCLRTFVKDIKE 370
           DGAAPR+INGCLRTFVKDI+E
Sbjct: 264 DGAAPRVINGCLRTFVKDIEE 283

[Close]

BLAST of Csa4G268020 vs. NCBI nr
Match: gi|225435806|ref|XP_002285757.1| (PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera])

HSP 1 Score: 358.6 bits (919), Expect = 1.3e-95
Identity = 185/273 (67.77%), Postives = 217/273 (79.49%), Query Frame = 1


Query: 101 TTRPNFHFSYHISGICQF--PFHASSIVPHIKDSMPRFCCQASLRASTSFSE---NRVAE 160
           +++P+F F+++ S  CQF  P     ++     S PR     SLR S    E   ++ +E
Sbjct: 12  SSKPHFIFNFNHSSSCQFLTPLPTKLLINSKLLSSPR----TSLRTSALTVEKPLDKPSE 71

Query: 161 ERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRES 220
            R        EM+P++DKSG+FCSPRAARELAL I YAACLEGSDPVRLFE+R+NARRE 
Sbjct: 72  PR--------EMLPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRLFERRMNARREP 131

Query: 221 GYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLI 280
           GYEFDK SL+EYNHMSFGGPPVT ET+EEADELLR +E++S IEAE+L+APPK+VY KLI
Sbjct: 132 GYEFDKDSLLEYNHMSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLI 191

Query: 281 LRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQI 340
           LRFTRKLLVAV D W+S  L I+KV PP WKN+PAGRILELCILHLAMSEI V+GTRHQI
Sbjct: 192 LRFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRILELCILHLAMSEIAVLGTRHQI 251

Query: 341 VINEAVDLAKRFCDGAAPRIINGCLRTFVKDIK 369
           VINEAVDLAKRFCDGAAPRIINGCLRTFVKD++
Sbjct: 252 VINEAVDLAKRFCDGAAPRIINGCLRTFVKDLE 272

The following BLAST results are available for this feature:

BLAST of Csa4G268020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUSB_PEPD6	9.8e-06	39.19	N utilization substance protein B homolog OS=Peptoclostridium difficile (strain ...	[more]

BLAST of Csa4G268020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWZ5_CUCSA	2.8e-217	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1	[more]
W9RK01_9ROSA	3.8e-97	70.11	Uncharacterized protein OS=Morus notabilis GN=L484_005067 PE=4 SV=1	[more]
M5WJ39_PRUPE	9.3e-96	72.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1	[more]
A0A059D8I6_EUCGR	1.8e-94	73.44	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03588 PE=4 SV=1	[more]
A0A067EH40_CITSI	8.7e-94	71.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1	[more]

BLAST of Csa4G268020 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26370.1	7.1e-87	71.36	antitermination NusB domain-containing protein	[more]

BLAST of Csa4G268020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198860\|gb\|KGN54018.1\|	4.0e-217	100.00	hypothetical protein Csa_4G268020 [Cucumis sativus]	[more]
gi\|659097953\|ref\|XP_008449897.1\|	1.6e-197	90.23	PREDICTED: uncharacterized protein LOC103491638 [Cucumis melo]	[more]
gi\|778692749\|ref\|XP_004149639.2\|	1.3e-170	100.00	PREDICTED: uncharacterized protein LOC101216754 [Cucumis sativus]	[more]
gi\|703124582\|ref\|XP_010103088.1\|	5.4e-97	70.11	hypothetical protein L484_005067 [Morus notabilis]	[more]
gi\|225435806\|ref\|XP_002285757.1\|	1.3e-95	67.77	PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006027	NusB_RsmB_TIM44
IPR011605	NusB_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006353	DNA-templated transcription, termination

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU108637	cucumber EST collection version 3.0	transcribed_cluster
CU134516	cucumber EST collection version 3.0	transcribed_cluster
CU149084	cucumber EST collection version 3.0	transcribed_cluster
CU175661	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G268020.1	Csa4G268020.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU108637	CU108637	transcribed_cluster
CU134516	CU134516	transcribed_cluster
CU149084	CU149084	transcribed_cluster
CU175661	CU175661	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006027	NusB/RsmB/TIM44	GENE3D	G3DSA:1.10.940.10		coord: 278..369 score: 3.0E-22coord: 176..220 score: 3.0
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 281..365 score: 4.8
IPR006027	NusB/RsmB/TIM44	unknown	SSF48013	NusB-like	coord: 178..213 score: 1.31E-17coord: 271..368 score: 1.31
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 148..374 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G268020	MELO3C014730	Melon (DHL92) v3.5.1	cumeB295
Csa4G268020	ClCG02G024430	Watermelon (Charleston Gray)	cuwcgB292
Csa4G268020	Lsi10G009140	Bottle gourd (USVL1VR-Ls)	culsiB246
Csa4G268020	MELO3C014730.2	Melon (DHL92) v3.6.1	cumedB279
Csa4G268020	Cla97C02G050690	Watermelon (97103) v2	cuwmbB287
Csa4G268020	Bhi10G000403	Wax gourd	cuwgoB390
Csa4G268020	CSPI04G12480	Wild cucumber (PI 183967)	cpicuB181
Csa4G268020	CsGy4G011760	Cucumber (Gy14) v2	cgybcuB174

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G268020	Cucumber (Gy14) v1	cgycuB220
Csa4G268020	Cucurbita maxima (Rimu)	cmacuB549
Csa4G268020	Cucurbita maxima (Rimu)	cmacuB605
Csa4G268020	Cucurbita moschata (Rifu)	cmocuB538
Csa4G268020	Cucurbita moschata (Rifu)	cmocuB596
Csa4G268020	Watermelon (97103) v1	cuwmB347
Csa4G268020	Cucurbita pepo (Zucchini)	cpecuB278
Csa4G268020	Cucurbita pepo (Zucchini)	cpecuB728
Csa4G268020	Cucumber (Gy14) v2	cgybcuB168
Csa4G268020	Silver-seed gourd	carcuB0535