Lsi09G017270 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G017270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	MADS box transcription factor
Location	chr09 : 25878192 .. 25878383 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGTACTGA

mRNA sequence

ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGTACTGA

Coding sequence (CDS)

ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGTACTGA

Protein sequence

MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNRY

Homology

[Close]

BLAST of Lsi09G017270 vs. Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-18
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCSG
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

[Close]

BLAST of Lsi09G017270 vs. Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-18
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59

[Close]

BLAST of Lsi09G017270 vs. Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-18
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Lsi09G017270 vs. Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-18
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59

[Close]

BLAST of Lsi09G017270 vs. Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-18
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Lsi09G017270 vs. TrEMBL
Match: W9QWB2_9ROSA (MADS-box protein OS=Morus notabilis GN=L484_026460 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-18
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR K+E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EVGL++F+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCSG 60

Query: 61 NR 63
           R
Sbjct: 61 PR 62

[Close]

BLAST of Lsi09G017270 vs. TrEMBL
Match: V7C5L0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G039400g PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-17
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR K+E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61 NRY 64
           R+
Sbjct: 61 PRF 63

[Close]

BLAST of Lsi09G017270 vs. TrEMBL
Match: D4QDZ2_PYRPY (Flowering locus C-like protein OS=Pyrus pyrifolia var. culta GN=FLC PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-17
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR K+E+KLI+++  R +TF KRRSGLIKKARELSVLC VEVGLV+F+ +GRLYEFCSG
Sbjct: 1  MGRGKVELKLIDNKLRRQVTFSKRRSGLIKKARELSVLCGVEVGLVIFSAKGRLYEFCSG 60

[Close]

BLAST of Lsi09G017270 vs. TrEMBL
Match: A0A151TY11_CAJCA (Developmental protein SEPALLATA 3 OS=Cajanus cajan GN=KK1_011131 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-17
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 NRY 64
          +RY
Sbjct: 61 SRY 63

[Close]

BLAST of Lsi09G017270 vs. TrEMBL
Match: A0A118JYX2_CYNCS (Transcription factor, K-box OS=Cynara cardunculus var. scolymus GN=Ccrd_023302 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-17
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 NRY 64
          +RY
Sbjct: 61 SRY 63

[Close]

BLAST of Lsi09G017270 vs. TAIR10
Match: AT1G24260.2 (AT1G24260.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-19
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Lsi09G017270 vs. TAIR10
Match: AT4G09960.3 (AT4G09960.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-19
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR KIE+K IE+  NR +TFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + 
Sbjct: 27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query: 61 N 62
          N
Sbjct: 87 N 87

[Close]

BLAST of Lsi09G017270 vs. TAIR10
Match: AT5G15800.2 (AT5G15800.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-19
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Lsi09G017270 vs. TAIR10
Match: AT3G02310.1 (AT3G02310.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-19
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59

[Close]

BLAST of Lsi09G017270 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.5 bits (223), Expect = 4.0e-19
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR K+E+K IE++ NR +TF KRR+GL+KKA ELSVLCD E+ L++F+NRG+LYEFCS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59

[Close]

BLAST of Lsi09G017270 vs. NCBI nr
Match: gi|659119793|ref|XP_008459847.1| (PREDICTED: MADS-box transcription factor 8-like [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-26
Identity = 56/61 (91.80%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIEVKLIEDRCNRH+TFCKRRSGL+KKARELSVLCDVEVG+++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Lsi09G017270 vs. NCBI nr
Match: gi|778711881|ref|XP_011656809.1| (PREDICTED: MADS-box transcription factor 8-like [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-24
Identity = 53/61 (86.89%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIEVKLIEDRCNRH+TFCKRRSGL+KKA+ELSVLCDV+VG+++FTNRGRLYEF SG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKAKELSVLCDVQVGIILFTNRGRLYEFSSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Lsi09G017270 vs. NCBI nr
Match: gi|703081153|ref|XP_010091612.1| (MADS-box protein [Morus notabilis])

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-18
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR K+E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EVGL++F+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCSG 60

Query: 61 NR 63
           R
Sbjct: 61 PR 62

[Close]

BLAST of Lsi09G017270 vs. NCBI nr
Match: gi|645250197|ref|XP_008231097.1| (PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 [Prunus mume])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR K+++K I+D+  R +TF KRRSGLIKKARELSVLC VEVGL++F+ +GRLYEFCSG
Sbjct: 1  MGRGKVQLKRIDDKIRRQVTFSKRRSGLIKKARELSVLCSVEVGLIIFSAKGRLYEFCSG 60

Query: 61 NRY 64
           R+
Sbjct: 61 ERF 63

[Close]

BLAST of Lsi09G017270 vs. NCBI nr
Match: gi|802724937|ref|XP_012085899.1| (PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR+K+E+K IEDR +RH+TF KRR+GLIKKAREL +LCDVE+G++VF+  GRLYEFCS
Sbjct: 1  MGRRKVEMKRIEDRSSRHVTFSKRRNGLIKKARELPILCDVEIGVIVFSTGGRLYEFCS 59

The following BLAST results are available for this feature:

BLAST of Lsi09G017270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MADS8_ORYSJ	1.4e-18	66.67	MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV...	[more]
CMB1_DIACA	5.4e-18	67.80	MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1	[more]
SEP3_ARATH	5.4e-18	63.93	Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1	[more]
SEP2_ARATH	5.4e-18	67.80	Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1	[more]
SEP1_ARATH	5.4e-18	63.93	Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2	[more]

BLAST of Lsi09G017270 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QWB2_9ROSA	6.4e-18	69.35	MADS-box protein OS=Morus notabilis GN=L484_026460 PE=4 SV=1	[more]
V7C5L0_PHAVU	1.4e-17	66.67	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G039400g PE=4 SV=1	[more]
D4QDZ2_PYRPY	2.4e-17	73.33	Flowering locus C-like protein OS=Pyrus pyrifolia var. culta GN=FLC PE=2 SV=1	[more]
A0A151TY11_CAJCA	2.4e-17	65.08	Developmental protein SEPALLATA 3 OS=Cajanus cajan GN=KK1_011131 PE=4 SV=1	[more]
A0A118JYX2_CYNCS	2.4e-17	65.08	Transcription factor, K-box OS=Cynara cardunculus var. scolymus GN=Ccrd_023302 P...	[more]

BLAST of Lsi09G017270 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24260.2	3.0e-19	63.93	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	3.0e-19	67.21	K-box region and MADS-box transcription factor family protein	[more]
AT5G15800.2	3.0e-19	63.93	K-box region and MADS-box transcription factor family protein	[more]
AT3G02310.1	3.0e-19	67.80	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.1	4.0e-19	66.10	K-box region and MADS-box transcription factor family protein	[more]

BLAST of Lsi09G017270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119793\|ref\|XP_008459847.1\|	4.1e-26	91.80	PREDICTED: MADS-box transcription factor 8-like [Cucumis melo]	[more]
gi\|778711881\|ref\|XP_011656809.1\|	3.0e-24	86.89	PREDICTED: MADS-box transcription factor 8-like [Cucumis sativus]	[more]
gi\|703081153\|ref\|XP_010091612.1\|	9.2e-18	69.35	MADS-box protein [Morus notabilis]	[more]
gi\|645250197\|ref\|XP_008231097.1\|	1.2e-17	68.25	PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 [Prunus ...	[more]
gi\|802724937\|ref\|XP_012085899.1\|	1.2e-17	71.19	PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048442	sepal development
biological_process	GO:0008150	biological_process
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0048440	carpel development
biological_process	GO:0010048	vernalization response
biological_process	GO:0048443	stamen development
biological_process	GO:0048833	specification of floral organ number
biological_process	GO:0010093	specification of floral organ identity
biological_process	GO:0048481	plant ovule development
biological_process	GO:0048441	petal development
biological_process	GO:0010076	maintenance of floral meristem identity
biological_process	GO:0001708	cell fate specification
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017270.1	Lsi09G017270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 2.8E-26coord: 23..38 score: 2.8E-26coord: 38..59 score: 2.8
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..57 score: 7.1
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 6.0
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 29
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 1..61 score: 2.22
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..59 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G017270	Cucsa.349650	Cucumber (Gy14) v1	cgylsiB562
Lsi09G017270	CmaCh08G001730	Cucurbita maxima (Rimu)	cmalsiB820
Lsi09G017270	CmoCh17G013780	Cucurbita moschata (Rifu)	cmolsiB322
Lsi09G017270	CmoCh08G001760	Cucurbita moschata (Rifu)	cmolsiB806
Lsi09G017270	Cla97C06G111440	Watermelon (97103) v2	lsiwmbB026
Lsi09G017270	Bhi12G002178	Wax gourd	lsiwgoB021
Lsi09G017270	Cp4.1LG01g11900	Cucurbita pepo (Zucchini)	cpelsiB312
Lsi09G017270	Cp4.1LG17g10640	Cucurbita pepo (Zucchini)	cpelsiB256
Lsi09G017270	CsGy6G007880	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G017270	Carg05000	Silver-seed gourd	carlsiB070
Lsi09G017270	Carg11598	Silver-seed gourd	carlsiB011
Lsi09G017270	CsaV3_6G008200	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G017270	Cucurbita maxima (Rimu)	cmalsiB333
Lsi09G017270	Cucurbita pepo (Zucchini)	cpelsiB485
Lsi09G017270	Wild cucumber (PI 183967)	cpilsiB001
Lsi09G017270	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G017270	Cucumber (Chinese Long) v2	culsiB402
Lsi09G017270	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G017270	Watermelon (Charleston Gray)	lsiwcgB028
Lsi09G017270	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G017270	Watermelon (97103) v1	lsiwmB038
Lsi09G017270	Watermelon (97103) v1	lsiwmB039
Lsi09G017270	Watermelon (97103) v1	lsiwmB041
Lsi09G017270	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G017270	Silver-seed gourd	carlsiB073
Lsi09G017270	Wax gourd	lsiwgoB054