CmoCh17G013780 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G013780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMADS box transcription factor
LocationCmo_Chr17 : 10700561 .. 10701041 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATATGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGTTCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGGTACGCTTTTGATCTTCGTTGTTTTTCTCGTTTTTCTCCGATTTTGTTTGTTCATATCGATTATGGTAGTGCAAGCTGTTGCTGAATGCCTTTTGAACGAATTTGAACTATTGCCTTTTGTTTTCTTTATGCTTGCTATTTGAAGTGATTTATGCCATCGGAAAATCTGTGATAGTCTTAGCGCGTTTTCTTCGTGAACTCTGCTTTCTGTCATATCGACGAAGAAAATGCAATTCTTCGTTTTTCTGTTTGATTTTTCTGAAAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG

mRNA sequence

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATATGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGTTCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG

Coding sequence (CDS)

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATATGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGTTCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG
Homology
[Close]
BLAST of CmoCh17G013780 vs. Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-19
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61 NREPLRKID 70
               R +D
Sbjct: 61 PSGMARTVD 69

[Close]
BLAST of CmoCh17G013780 vs. Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-19
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

[Close]
BLAST of CmoCh17G013780 vs. Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR KIE+KRIE+  NR VTFCKRR GL+KKA ELSVLCD EV L++F+ RGRLYE+ + 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]
BLAST of CmoCh17G013780 vs. Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-18
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of CmoCh17G013780 vs. Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-18
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          +GR KIE+KRIE+  NR VTFCKRR GL+KKA ELSVLCD EV LV+F+NRGRLYE+ + 
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANN 76

Query: 61 N 62
          +
Sbjct: 77 S 77

[Close]
BLAST of CmoCh17G013780 vs. TrEMBL
Match: W9QWB2_9ROSA (MADS-box protein OS=Morus notabilis GN=L484_026460 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-19
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EVGL+IF+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCSG 60

Query: 61 NREPLRK 68
           R  L K
Sbjct: 61 PRNGLLK 67

[Close]
BLAST of CmoCh17G013780 vs. TrEMBL
Match: D7T9Z7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00110 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.2e-18
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61 NREP 65
          +  P
Sbjct: 61 SSMP 64

[Close]
BLAST of CmoCh17G013780 vs. TrEMBL
Match: A5C952_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036170 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.2e-18
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61 NREP 65
          +  P
Sbjct: 61 SSMP 64

[Close]
BLAST of CmoCh17G013780 vs. TrEMBL
Match: M5WVU8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015338mg PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+++KRI+D   R VTF KRR+GLIKKARELSVLC VEVGL+IF+ +GRLYEFCSG
Sbjct: 1  MGRGKVQLKRIDDKIRRQVTFSKRRSGLIKKARELSVLCSVEVGLIIFSAKGRLYEFCSG 60

Query: 61 NREPLRKI 69
            E  R+I
Sbjct: 61 --ESFRRI 66

[Close]
BLAST of CmoCh17G013780 vs. TrEMBL
Match: Q75QK3_SILLA (SEPALLATA1 homologous protein OS=Silene latifolia GN=SlSEP1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61 NREPLRKID 70
              L+ ++
Sbjct: 61 PSSMLKTLE 69

[Close]
BLAST of CmoCh17G013780 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-20
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61 NREPLRKID 70
               R +D
Sbjct: 61 PSGMARTVD 69

[Close]
BLAST of CmoCh17G013780 vs. TAIR10
Match: AT4G09960.3 (AT4G09960.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR KIE+KRIE+  NR VTFCKRR GL+KKA ELSVLCD EV L++F+ RGRLYE+ + 
Sbjct: 27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query: 61 N 62
          N
Sbjct: 87 N 87

[Close]
BLAST of CmoCh17G013780 vs. TAIR10
Match: AT5G15800.2 (AT5G15800.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-19
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of CmoCh17G013780 vs. TAIR10
Match: AT1G24260.2 (AT1G24260.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-19
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]
BLAST of CmoCh17G013780 vs. TAIR10
Match: AT3G02310.1 (AT3G02310.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-19
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCS 60
          MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59

[Close]
BLAST of CmoCh17G013780 vs. NCBI nr
Match: gi|659119793|ref|XP_008459847.1| (PREDICTED: MADS-box transcription factor 8-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIEVK IED CNRHVTFCKRR+GL+KKARELSVLCDVEVG+++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]
BLAST of CmoCh17G013780 vs. NCBI nr
Match: gi|778711881|ref|XP_011656809.1| (PREDICTED: MADS-box transcription factor 8-like [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIEVK IED CNRHVTFCKRR+GL+KKA+ELSVLCDV+VG+++FTNRGRLYEF SG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKAKELSVLCDVQVGIILFTNRGRLYEFSSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]
BLAST of CmoCh17G013780 vs. NCBI nr
Match: gi|703081153|ref|XP_010091612.1| (MADS-box protein [Morus notabilis])

HSP 1 Score: 101.3 bits (251), Expect = 7.2e-19
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EVGL+IF+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCSG 60

Query: 61 NREPLRK 68
           R  L K
Sbjct: 61 PRNGLLK 67

[Close]
BLAST of CmoCh17G013780 vs. NCBI nr
Match: gi|147865283|emb|CAN84110.1| (hypothetical protein VITISV_036170 [Vitis vinifera])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61 NREP 65
          +  P
Sbjct: 61 SSMP 64

[Close]
BLAST of CmoCh17G013780 vs. NCBI nr
Match: gi|359472558|ref|XP_002263410.2| (PREDICTED: MADS-box protein CMB1 [Vitis vinifera])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 1  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61 NREP 65
          +  P
Sbjct: 61 SSMP 64

The following BLAST results are available for this feature:
BLAST of CmoCh17G013780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL3_ARATH4.2e-1963.77Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2[more]
MADS8_ORYSJ7.2e-1971.67MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV... [more]
AGL11_ARATH2.1e-1868.85Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1[more]
SEP3_ARATH2.7e-1868.85Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1[more]
AG_SOLLC2.7e-1868.85Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1[more]
BLAST of CmoCh17G013780 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QWB2_9ROSA5.0e-1971.64MADS-box protein OS=Morus notabilis GN=L484_026460 PE=4 SV=1[more]
D7T9Z7_VITVI7.2e-1870.31Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00110 PE=4 SV=... [more]
A5C952_VITVI7.2e-1870.31Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036170 PE=4 SV=1[more]
M5WVU8_PRUPE1.2e-1769.12Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015338mg PE=4 SV=1[more]
Q75QK3_SILLA1.2e-1763.77SEPALLATA1 homologous protein OS=Silene latifolia GN=SlSEP1 PE=2 SV=1[more]
BLAST of CmoCh17G013780 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03710.12.4e-2063.77 K-box region and MADS-box transcription factor family protein [more]
AT4G09960.31.2e-1968.85 K-box region and MADS-box transcription factor family protein [more]
AT5G15800.21.5e-1968.85 K-box region and MADS-box transcription factor family protein [more]
AT1G24260.21.5e-1968.85 K-box region and MADS-box transcription factor family protein [more]
AT3G02310.12.6e-1969.49 K-box region and MADS-box transcription factor family protein [more]
BLAST of CmoCh17G013780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119793|ref|XP_008459847.1|1.5e-2488.52PREDICTED: MADS-box transcription factor 8-like [Cucumis melo][more]
gi|778711881|ref|XP_011656809.1|1.1e-2283.61PREDICTED: MADS-box transcription factor 8-like [Cucumis sativus][more]
gi|703081153|ref|XP_010091612.1|7.2e-1971.64MADS-box protein [Morus notabilis][more]
gi|147865283|emb|CAN84110.1|1.0e-1770.31hypothetical protein VITISV_036170 [Vitis vinifera][more]
gi|359472558|ref|XP_002263410.2|1.0e-1770.31PREDICTED: MADS-box protein CMB1 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0048833 specification of floral organ number
biological_process GO:0008150 biological_process
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0001708 cell fate specification
biological_process GO:0048443 stamen development
biological_process GO:0010048 vernalization response
biological_process GO:0010093 specification of floral organ identity
biological_process GO:0048442 sepal development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048481 plant ovule development
biological_process GO:0048441 petal development
biological_process GO:0010076 maintenance of floral meristem identity
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G013780.1CmoCh17G013780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 5.1E-27coord: 38..59
score: 5.1E-27coord: 23..38
score: 5.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
score: 5.6
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 7.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
scor
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score: 29
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 1..63
score: 5.62
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..59
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G013780Cucsa.349650Cucumber (Gy14) v1cgycmoB0951
CmoCh17G013780Lsi09G017270Bottle gourd (USVL1VR-Ls)cmolsiB322
CmoCh17G013780Cp4.1LG01g11900Cucurbita pepo (Zucchini)cmocpeB360
CmoCh17G013780MELO3C022315.2Melon (DHL92) v3.6.1cmomedB353
CmoCh17G013780CsGy6G007890Cucumber (Gy14) v2cgybcmoB734
CmoCh17G013780Carg11598Silver-seed gourdcarcmoB0021
CmoCh17G013780Carg05002Silver-seed gourdcarcmoB0114
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G013780Cucurbita moschata (Rifu)cmocmoB315
CmoCh17G013780Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G013780Cucurbita maxima (Rimu)cmacmoB891
CmoCh17G013780Wild cucumber (PI 183967)cmocpiB361
CmoCh17G013780Cucumber (Chinese Long) v2cmocuB358
CmoCh17G013780Melon (DHL92) v3.5.1cmomeB308
CmoCh17G013780Watermelon (Charleston Gray)cmowcgB318
CmoCh17G013780Watermelon (97103) v1cmowmB347
CmoCh17G013780Cucurbita pepo (Zucchini)cmocpeB347
CmoCh17G013780Cucurbita pepo (Zucchini)cmocpeB372
CmoCh17G013780Cucumber (Chinese Long) v3cmocucB0433
CmoCh17G013780Watermelon (97103) v2cmowmbB354
CmoCh17G013780Wax gourdcmowgoB0456
CmoCh17G013780Wax gourdcmowgoB0479