Carg05002 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05002
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MADS-box transcription factor
Location	Cucurbita_argyrosperma_scaffold_060 : 744721 .. 745585 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGGAAGAAGATCGAGTTGAAGCGGATCGAAGATATGTGTAATCGACATGTGACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCTCGAGAACTCTCTGTTCTCTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAACCGCGGCCGTCTCTATGAGTTTTGCAGCGGCGACAGGTACGAGTTTTTTTTTTTTTTTTTTTTTTTTTGATCCTTCGTTGTTTTTCTTGTTTGCTTCGATTCTTCAATCTCTGATTGTGTTCGTTGCTATTGCTTTTTGTTTCTGTTTGATCTTTCTACGTACTGCTTTATTTTCTCGCGAACTCGGTGATAGTCTTAGTGTTAGGAATCGCATTTTCTAACGCGAGCTCTGATTTCTGATATCAACGAAGATTATGCTACTCTTCGTTTGTTGTTTGATCTCTGAGAGATACTTTCTACATGAAAATCGATGGAGTTTAGCGTTCCGTCTGATTTCTTGTTGAATGTTTCTTGTCTTCGGAACGTTTCGTTCCTGTTACGGACTGAGAAAATGCAATCCTGTGTGATCTTAAGAGACTTTCTCGGAAGATCGTTGGTTCTCAGTTTTCCGATACTTTGTTCGCTCACTGTTTTTTTCCTCCATGTTTCTCTCTCGTCCATCCATGGTTTCCTGCTTCATTTACGTGTTTTCTGCCTTGTATGTGAATGACTAAATTTGTAATTATTTACATAAGAAATATTTTAAAGCCATGTAATTACAAAACTGAGACTAAAACCGTCACTGTACCAAATAATTCCGTTCGTCTTAAAAAATATATTCTAATGATGTTTTTGATATGTTTGTTAGGTGTCAACATCAAAGTATTTATGTATAG

mRNA sequence

ATGGGACGGAAGAAGATCGAGTTGAAGCGGATCGAAGATATGTGTAATCGACATGTGACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCTCGAGAACTCTCTGTTCTCTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAACCGCGGCCGTCTCTATGAGTTTTGCAGCGGCGACAGGTGTCAACATCAAAGTATTTATGTATAG

Coding sequence (CDS)

ATGGGACGGAAGAAGATCGAGTTGAAGCGGATCGAAGATATGTGTAATCGACATGTGACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCTCGAGAACTCTCTGTTCTCTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAACCGCGGCCGTCTCTATGAGTTTTGCAGCGGCGACAGGTGTCAACATCAAAGTATTTATGTATAG

Protein sequence

MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDRCQHQSIYV

Homology

[Close]

BLAST of Carg05002 vs. NCBI nr
Match: XP_022959860.1 (truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata])

HSP 1 Score: 129.0 bits (323), Expect = 6.2e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]

BLAST of Carg05002 vs. NCBI nr
Match: XP_023514206.1 (MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.0 bits (323), Expect = 6.2e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]

BLAST of Carg05002 vs. NCBI nr
Match: XP_023004227.1 (MADS-box protein 04g005320-like [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 8.1e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]

BLAST of Carg05002 vs. NCBI nr
Match: XP_023514717.1 (MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 7.6e-25
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIE+KRIED CNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 D 62
          +
Sbjct: 61 N 61

[Close]

BLAST of Carg05002 vs. NCBI nr
Match: XP_022155417.1 (MADS-box transcription factor 8-like isoform X3 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 6.4e-24
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
           MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  D 62
           +
Sbjct: 100 N 100

[Close]

BLAST of Carg05002 vs. TAIR10
Match: AT3G02310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 5.2e-20
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. TAIR10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.2 bits (230), Expect = 6.8e-20
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. TAIR10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.2 bits (230), Expect = 6.8e-20
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR K+ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L++F+NRG+LYEFCS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. TAIR10
Match: AT5G15800.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.2 bits (230), Expect = 6.8e-20
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. TAIR10
Match: AT4G09960.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR KIE+KRIE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + 
Sbjct: 27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query: 61 D 62
          +
Sbjct: 87 N 87

[Close]

BLAST of Carg05002 vs. Swiss-Prot
Match: sp|Q9SAR1|MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS8 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCSG
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

[Close]

BLAST of Carg05002 vs. Swiss-Prot
Match: sp|Q39685|CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.4e-19
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. Swiss-Prot
Match: sp|P29384|SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana OX=3702 GN=SEP2 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.4e-19
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. Swiss-Prot
Match: sp|P29383|AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-18
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR K+ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L++F+NRG+LYEFCS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. Swiss-Prot
Match: sp|Q03489|AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-18
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 60
          MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59

[Close]

BLAST of Carg05002 vs. TrEMBL
Match: tr|A0A1S3CCC5|A0A1S3CCC5_CUCME (MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.4e-24
Identity = 53/61 (86.89%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKKIE+K IED CNRHVTFCKRRSGL+KKARELSVLCDVEVG+++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCSG 60

Query: 61 D 62
          +
Sbjct: 61 N 61

[Close]

BLAST of Carg05002 vs. TrEMBL
Match: tr|A0A2I0IFZ9|A0A2I0IFZ9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_037337 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.8e-20
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKK+E+KRIED  +R VTF KRRSGLIKKARELS+LCDVEV L+VF++RGRLYEFCSG
Sbjct: 1  MGRKKLEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVEVALLVFSSRGRLYEFCSG 60

Query: 61 DR 63
          +R
Sbjct: 61 NR 62

[Close]

BLAST of Carg05002 vs. TrEMBL
Match: tr|A0A218XYR2|A0A218XYR2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr024524 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKK+E+KRIED  +R VTF KRRSGLIKKARELS+LCDVEV L+VF++RGRLYEFCSG
Sbjct: 1  MGRKKLEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVEVALLVFSSRGRLYEFCSG 60

Query: 61 D 62
          +
Sbjct: 61 N 61

[Close]

BLAST of Carg05002 vs. TrEMBL
Match: tr|A0A2P6S6L4|A0A2P6S6L4_ROSCH (Putative transcription factor MADS-type1 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0175851 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGR K++LKRIED   R VTF KRR+GL+KKARELSVLC VEVGL++F+ +GRLYEFCSG
Sbjct: 1  MGRGKVQLKRIEDKIRRQVTFSKRRTGLMKKARELSVLCGVEVGLIIFSAKGRLYEFCSG 60

Query: 61 DRCQHQSIYV 71
          DR   +S+++
Sbjct: 61 DRYAVRSLFL 70

[Close]

BLAST of Carg05002 vs. TrEMBL
Match: tr|A0A2P5B948|A0A2P5B948_PARAD (MADS-box transcription factor OS=Parasponia andersonii OX=3476 GN=PanMADS27 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-19
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60
          MGRKK+ELKRIED  +R VTF KRRSGLIKKARELSVLCD++V L++F++RGRLYEF +G
Sbjct: 1  MGRKKVELKRIEDKSSRQVTFSKRRSGLIKKARELSVLCDIDVALIIFSSRGRLYEFANG 60

Query: 61 DRCQHQSIYV 71
                S+Y+
Sbjct: 61 TEYVSLSLYL 70

The following BLAST results are available for this feature:

BLAST of Carg05002 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959860.1	6.2e-27	100.00	truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata]	[more]
XP_023514206.1	6.2e-27	100.00	MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004227.1	8.1e-27	98.36	MADS-box protein 04g005320-like [Cucurbita maxima]	[more]
XP_023514717.1	7.6e-25	91.80	MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022155417.1	6.4e-24	88.52	MADS-box transcription factor 8-like isoform X3 [Momordica charantia]	[more]

BLAST of Carg05002 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02310.1	5.2e-20	72.88	K-box region and MADS-box transcription factor family protein	[more]
AT1G24260.2	6.8e-20	71.19	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.1	6.8e-20	71.19	K-box region and MADS-box transcription factor family protein	[more]
AT5G15800.2	6.8e-20	71.19	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	2.0e-19	68.85	K-box region and MADS-box transcription factor family protein	[more]

BLAST of Carg05002 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SAR1\|MADS8_ORYSJ	1.9e-19	71.67	MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]
sp\|Q39685\|CMB1_DIACA	9.4e-19	72.88	MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1	[more]
sp\|P29384\|SEP2_ARATH	9.4e-19	72.88	Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana OX=3702 GN=SEP2 PE=1 S...	[more]
sp\|P29383\|AGL3_ARATH	1.2e-18	71.19	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
sp\|Q03489\|AGL9_PETHY	1.2e-18	71.19	Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE...	[more]

BLAST of Carg05002 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCC5\|A0A1S3CCC5_CUCME	9.4e-24	86.89	MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=...	[more]
tr\|A0A2I0IFZ9\|A0A2I0IFZ9_PUNGR	4.8e-20	79.03	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_037337 PE=4 SV=1	[more]
tr\|A0A218XYR2\|A0A218XYR2_PUNGR	2.4e-19	78.69	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr024524 PE=4 SV=1	[more]
tr\|A0A2P6S6L4\|A0A2P6S6L4_ROSCH	3.1e-19	67.14	Putative transcription factor MADS-type1 family OS=Rosa chinensis OX=74649 GN=Rc...	[more]
tr\|A0A2P5B948\|A0A2P5B948_PARAD	5.4e-19	67.14	MADS-box transcription factor OS=Parasponia andersonii OX=3476 GN=PanMADS27 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036879	TF_MADSbox_sf
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05002-RA	Carg05002-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 76.85 coord: 38..59 score: 52.14 coord: 3..23 score: 59.11
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.3E-33 score: 127.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 5.4E-24 score: 83.3
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 29.927
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	G3DSA:3.40.1810.10		coord: 13..69 e-value: 1.3E-23 score: 84.2
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	SSF55455	SRF-like	coord: 1..63
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05002	Cucsa.349650	Cucumber (Gy14) v1	carcgyB0096
Carg05002	CmaCh08G001730	Cucurbita maxima (Rimu)	carcmaB0112
Carg05002	CmoCh17G013780	Cucurbita moschata (Rifu)	carcmoB0114
Carg05002	CmoCh08G001760	Cucurbita moschata (Rifu)	carcmoB0119
Carg05002	CsGy6G007890	Cucumber (Gy14) v2	carcgybB0090
Carg05002	CsaV3_6G008210	Cucumber (Chinese Long) v3	carcucB0097

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05002	Watermelon (97103) v2	carwmbB0077
Carg05002	Watermelon (97103) v2	carwmbB0078
Carg05002	Wax gourd	carwgoB0091
Carg05002	Cucurbita pepo (Zucchini)	carcpeB0127
Carg05002	Silver-seed gourd	carcarB010
Carg05002	Cucurbita maxima (Rimu)	carcmaB0106
Carg05002	Cucurbita pepo (Zucchini)	carcpeB0125
Carg05002	Wild cucumber (PI 183967)	carcpiB0094
Carg05002	Wild cucumber (PI 183967)	carcpiB0097
Carg05002	Cucumber (Chinese Long) v2	carcuB0090
Carg05002	Cucumber (Chinese Long) v2	carcuB0093
Carg05002	Cucumber (Chinese Long) v3	carcucB0100
Carg05002	Bottle gourd (USVL1VR-Ls)	carlsiB073
Carg05002	Melon (DHL92) v3.5.1	carmeB0082
Carg05002	Melon (DHL92) v3.6.1	carmedB0081
Carg05002	Melon (DHL92) v3.6.1	carmedB0083
Carg05002	Watermelon (Charleston Gray)	carwcgB0082
Carg05002	Watermelon (Charleston Gray)	carwcgB0083
Carg05002	Watermelon (97103) v1	carwmB0083