Carg05000 (gene) Silver-seed gourd

Overview
NameCarg05000
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMADS box transcription factor
LocationCucurbita_argyrosperma_scaffold_060 : 737860 .. 740391 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGAGAGGGTATGAGGAGGGGATTGGTGAAATAAGCGAAGAATATAAATGGTGACGCACAAAGGTTAAGAGGGGGGAAAGAGAGAAGTGAAACAAAAAGAGCAAAGAAATTTGATATTTGATTTAGTTTTTGGCATTTCCTTTTCCGTTTGATTTTCGTTTTGATTTTCCGGGAAAATTTGGGATCAAATCTGTTTGGTTAGAGAGAAAAAGGAAAAAAAAGGAAGAACAAAATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCGAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGGTATCATCATCATCATCATCATCAACAACAACTGTTGTATTGAACACTAATTTTTTTATTTTAATCCCGTTTTTGCCATTCTTTCTTTTTAGGTTTTCTGTTTCTTCCCTTTCTTTTTTCCCCTTTCCATGCTAAGAATAAAAGAAAGAGAGAGAATATTTTCAAAACAAAATTTACATATATATATATACACATAAACGAATGAATCCTTTCCTTTTCGCTTCTCTGTGTTTTCTTCCGTCGCTTCATCCATGGCGTCTCAGAAATTAGGGTTTTCTTCTTCTTCTTCTTCCTCCTCCATGCCGCCATGGATCGATCCATCGATTTAGGGTTTCTTCTTCTTCTTCTCCTCATTTAGGGTTTTCTTACTGTTTTCTTCATGGATCTTTGTTTCTTTTACCGATTAAGAGTTGTAGTTTGTGTTTTTCAAGGGTTTTGATCCGAAATGAGATTTGATTTCTGAGGATTTGTGTTTGTTTTCATGTAAATTTGAAACTAGAAATGGATTTTTTCAATTTGTTCTTACTATTTTGTGTTTGATTATTACTATAATAATTTCAGGCTTCAGGATTCTTCAAAAATTTAAGAAATAGGTTAATTATTGCGTACTTCAAGGTTAATAATTCATGTATTTGTTGATTACAATTTGACATTTAATGATTTTCAAGATCTCTCAAATGTTATTCATTTTATCTAATTTTTTTAAACACTTTAGATCGAGGGATTTATTTATTTTGGTATTATTATGTGTGAAATCTAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACTAGAGAAGCCTTGGTAATCACTTTTCTATTTTTTATTTTTTAAATTAAGTAGGTTAATTAATTAGTTAATTAATTAATCCTTTTTTTTTTTAAATAAAAGATGTTGTTATTATTATTTTATTATTTGATGATATAAAATGATAGGATGGGTTAATTATAGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGTAATAACCCCAACATTTTAGATACCTTTACTTTTCATTTTTGTAGAATATTGATTTCTGATCTTAAAGTTTTAGGTTCAAGAGTAATTTAGGACGTATCGGACTAATATGTGTCATGATATTGTCTATTCTCTTCGATTAATAATGTTTTTTCATTCGTTAGGGGTAGGGGTGTTCATATGACCCGATAGCCCGACTAACCCAGACTACCCCATCCCAAATCATTAATATTGGGTTGGGTTGAGTTAGGGTAAAGTTTTTTCGAATTGGGTTAGGTTGAATTTTTTTGGAAAACAAAAAAATACGGGTTAATTCACTTGTTAGTATTTTTTTTGTCGGGTCAACACGACCAAATTGAAAATAGGGTTACGACCAACCTAACCCGCCTTATTCTACTTTTTAGATTATTATGAAAATTAAAAATATTTGACGTTTGTAACTGAGGTTAGTGTTGCGTTGTGACTTGTGACTGTTTGATATTTGAGTTTTATGAGATTTTAGTTATTAATGTAGCATATATTGGGATAAGTAGGCTTTTTTAAAATAATTACAAATAAACATCCGACAATCGAACTCAACCCAATCTGAAAATAGAGGATTAGGTTGGGTTGAGTTGAATTGTGAATTTTGTTCGAGTTGTTTGGGTCACCAATCTAACAAGCTCAAAATTTTGAGTTAGTCCAAAAGATTTTTCCAACTCAACTTAACTCAAGTAGACCTCTAATGGAAGGTTCTACAATCGTTCAAACTCACAACCACAAGGGAAAGAAGGTTTAAAGTAATGATATGATGTACAATAACTTATTGATTTACATTAAAGTTTAAATAAACACATAATGAGATTAACCGAGTCGTGTTTAGTTGGTTCGGAGACGCTAGGTTATTTCGTAATTATGTTTTCTTTTTATGTGATAATTGGAATATAAGCAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGGTAGTTCTTCAACTTCTCCATTGCCTTTAA

mRNA sequence

AGGGAGAGGGTATGAGGAGGGGATTGGTGAAATAAGCGAAGAATATAAATGGTGACGCACAAAGGTTAAGAGGGGGGAAAGAGAGAAGTGAAACAAAAAGAGCAAAGAAATTTGATATTTGATTTAGTTTTTGGCATTTCCTTTTCCGTTTGATTTTCGTTTTGATTTTCCGGGAAAATTTGGGATCAAATCTGTTTGGTTAGAGAGAAAAAGGAAAAAAAAGGAAGAACAAAATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCGAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACTAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGGTAGTTCTTCAACTTCTCCATTGCCTTTAA

Coding sequence (CDS)

ATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCGAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACTAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGGTAGTTCTTCAACTTCTCCATTGCCTTTAA

Protein sequence

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRVVLQLLHCL
Homology
[Close]
BLAST of Carg05000 vs. NCBI nr
Match: XP_004140534.1 (PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 4.4e-70
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           LSSKELESLERQLDMSLKQIRSTR    L
Sbjct: 121 LSSKELESLERQLDMSLKQIRSTRTQYML 149

[Close]
BLAST of Carg05000 vs. NCBI nr
Match: AXR70632.1 (MADS-box 10 [Momordica dioica])

HSP 1 Score: 273.5 bits (698), Expect = 4.4e-70
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           LSSKELESLERQLDMSLKQIRSTR    L
Sbjct: 121 LSSKELESLERQLDMSLKQIRSTRTQYML 149

[Close]
BLAST of Carg05000 vs. NCBI nr
Match: XP_011656808.1 (PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 4.4e-70
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           LSSKELESLERQLDMSLKQIRSTR    L
Sbjct: 121 LSSKELESLERQLDMSLKQIRSTRTQYML 149

[Close]
BLAST of Carg05000 vs. NCBI nr
Match: XP_022959859.1 (agamous-like MADS-box protein AGL9 homolog isoform X2 [Cucurbita moschata] >XP_023004224.1 agamous-like MADS-box protein AGL9 homolog isoform X2 [Cucurbita maxima] >XP_023514991.1 agamous-like MADS-box protein AGL9 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.5 bits (698), Expect = 4.4e-70
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           LSSKELESLERQLDMSLKQIRSTR    L
Sbjct: 121 LSSKELESLERQLDMSLKQIRSTRTQYML 149

[Close]
BLAST of Carg05000 vs. NCBI nr
Match: ADU56817.1 (MADS-box protein AGL2 subfamily [Coffea arabica] >CDP13360.1 unnamed protein product [Coffea canephora])

HSP 1 Score: 272.7 bits (696), Expect = 7.6e-70
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPN+STREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNISTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELESLERQLDMSLKQIRSTR  + L
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQVML 149

[Close]
BLAST of Carg05000 vs. TAIR10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 253.1 bits (645), Expect = 1.1e-67
Identity = 135/151 (89.40%), Postives = 141/151 (93.38%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSML+TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRVVLQL 150
           GPLS+KELESLERQLD SLKQIR+ R    L
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFML 151

[Close]
BLAST of Carg05000 vs. TAIR10
Match: AT5G15800.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 222.2 bits (565), Expect = 2.1e-58
Identity = 120/149 (80.54%), Postives = 130/149 (87.25%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           S+MLKTL+RYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGEDLGP
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELE LERQLD SLKQ+RS +    L
Sbjct: 121 LNSKELEQLERQLDGSLKQVRSIKTQYML 148

[Close]
BLAST of Carg05000 vs. TAIR10
Match: AT3G02310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 218.8 bits (556), Expect = 2.4e-57
Identity = 117/149 (78.52%), Postives = 129/149 (86.58%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           S+MLKTLERYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGEDLGP
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELE LERQLD SLKQ+R  +    L
Sbjct: 121 LNSKELEQLERQLDGSLKQVRCIKTQYML 148

[Close]
BLAST of Carg05000 vs. TAIR10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-47
Identity = 99/145 (68.28%), Postives = 120/145 (82.76%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  -SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLG 120
            S M +T+++Y+K +Y   +PN S ++  +    Q+YLKLK+R E LQ SQR+LLGE+L 
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELS 120

Query: 121 PLSSKELESLERQLDMSLKQIRSTR 145
            +   ELE LERQ+D SL+QIRST+
Sbjct: 121 EMDVNELEHLERQVDASLRQIRSTK 143

[Close]
BLAST of Carg05000 vs. TAIR10
Match: AT1G69120.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 160.6 bits (405), Expect = 7.6e-40
Identity = 87/149 (58.39%), Postives = 117/149 (78.52%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRV+LKRIENKINRQVTF+KRR GLLKKA+E+SVLCDAEVAL++FS++GKL+E+ + 
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  SSMLKTLERYQKCNYG-----APEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLG 120
           S M K LERY++ +Y      APE +V+T  ++      EY +LKA+ E L+R+QR+ LG
Sbjct: 61  SCMEKILERYERYSYAERQLIAPESDVNTNWSM------EYNRLKAKIELLERNQRHYLG 120

Query: 121 EDLGPLSSKELESLERQLDMSLKQIRSTR 145
           EDL  +S KEL++LE+QLD +LK IR+ +
Sbjct: 121 EDLQAMSPKELQNLEQQLDTALKHIRTRK 143

[Close]
BLAST of Carg05000 vs. Swiss-Prot
Match: sp|Q03489|AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-71
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPE N+STREALE+SSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELESLERQLDMSLKQIRSTR  L L
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLML 149

[Close]
BLAST of Carg05000 vs. Swiss-Prot
Match: sp|Q42464|AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum OX=4081 GN=TDR5 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-71
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIE KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPN+STREALE+SSQQEYLKLK RYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELESLERQLDMSLKQIRSTR  L L
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLML 149

[Close]
BLAST of Carg05000 vs. Swiss-Prot
Match: sp|O65874|MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum OX=3888 GN=MTF1 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-66
Identity = 133/151 (88.08%), Postives = 143/151 (94.70%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREA--LELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSMLKTLERYQKCNYGAPE NV+++EA  LELSSQQEYLKLKARYE+LQRSQRNL+GEDL
Sbjct: 61  SSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRVVLQL 150
           GPLSSK+LE+LERQLD SLKQIRSTR    L
Sbjct: 121 GPLSSKDLETLERQLDSSLKQIRSTRTQFML 151

[Close]
BLAST of Carg05000 vs. Swiss-Prot
Match: sp|O22456|SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana OX=3702 GN=SEP3 PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-66
Identity = 135/151 (89.40%), Postives = 141/151 (93.38%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSML+TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRVVLQL 150
           GPLS+KELESLERQLD SLKQIR+ R    L
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFML 151

[Close]
BLAST of Carg05000 vs. Swiss-Prot
Match: sp|O04067|AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.5e-65
Identity = 132/151 (87.42%), Postives = 139/151 (92.05%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSM++TLERYQKCNYG PEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGEDL
Sbjct: 61  SSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRVVLQL 150
           GPLS+KELE LERQLD SLKQIR+ R    L
Sbjct: 121 GPLSTKELELLERQLDSSLKQIRALRTQFML 151

[Close]
BLAST of Carg05000 vs. TrEMBL
Match: tr|A0A068UXU4|A0A068UXU4_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038268001 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.0e-70
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPN+STREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNISTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELESLERQLDMSLKQIRSTR  + L
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQVML 149

[Close]
BLAST of Carg05000 vs. TrEMBL
Match: tr|E9JPX2|E9JPX2_COFAR (MADS-box protein AGL2 subfamily OS=Coffea arabica OX=13443 GN=C14 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.0e-70
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPN+STREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNISTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELESLERQLDMSLKQIRSTR  + L
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQVML 149

[Close]
BLAST of Carg05000 vs. TrEMBL
Match: tr|V9PDT1|V9PDT1_CUCME (MADS-box protein 5 OS=Cucumis melo OX=3656 GN=LOC103498850 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.5e-70
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           LSSKELE+LERQLDMSLKQIRSTR    L
Sbjct: 121 LSSKELENLERQLDMSLKQIRSTRTQYML 149

[Close]
BLAST of Carg05000 vs. TrEMBL
Match: tr|A0A1S3CAN1|A0A1S3CAN1_CUCME (MADS-box protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498850 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.5e-70
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           LSSKELE+LERQLDMSLKQIRSTR    L
Sbjct: 121 LSSKELENLERQLDMSLKQIRSTRTQYML 149

[Close]
BLAST of Carg05000 vs. TrEMBL
Match: tr|Q7Y039|Q7Y039_SOLLC (MADS-box protein 5 OS=Solanum lycopersicum OX=4081 GN=543885 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.1e-69
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPEPN+STREALE+SSQQEYLKLK RYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRVVLQL 150
           L+SKELESLERQLDMSLKQIRSTR  L L
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLML 149

The following BLAST results are available for this feature:
BLAST of Carg05000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140534.14.4e-7097.32PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1 [Cucumis sativu... [more]
AXR70632.14.4e-7097.32MADS-box 10 [Momordica dioica][more]
XP_011656808.14.4e-7097.32PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2 [Cucumis sativu... [more]
XP_022959859.14.4e-7097.32agamous-like MADS-box protein AGL9 homolog isoform X2 [Cucurbita moschata] >XP_0... [more]
ADU56817.17.6e-7095.97MADS-box protein AGL2 subfamily [Coffea arabica] >CDP13360.1 unnamed protein pro... [more]
BLAST of Carg05000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24260.21.1e-6789.40K-box region and MADS-box transcription factor family protein [more]
AT5G15800.22.1e-5880.54K-box region and MADS-box transcription factor family protein [more]
AT3G02310.12.4e-5778.52K-box region and MADS-box transcription factor family protein [more]
AT2G03710.11.7e-4768.28K-box region and MADS-box transcription factor family protein [more]
AT1G69120.17.6e-4058.39K-box region and MADS-box transcription factor family protein [more]
BLAST of Carg05000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q03489|AGL9_PETHY1.6e-7195.30Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE... [more]
sp|Q42464|AGL9_SOLLC2.7e-7194.63Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum OX=4081 GN=TD... [more]
sp|O65874|MTF1_PEA2.0e-6688.08MADS-box transcription factor 1 OS=Pisum sativum OX=3888 GN=MTF1 PE=2 SV=1[more]
sp|O22456|SEP3_ARATH2.0e-6689.40Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana OX=3702 GN=SEP3 PE=1 S... [more]
sp|O04067|AGL9_SINAL6.5e-6587.42Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 ... [more]
BLAST of Carg05000 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A068UXU4|A0A068UXU4_COFCA5.0e-7095.97Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038268001 PE=4 ... [more]
tr|E9JPX2|E9JPX2_COFAR5.0e-7095.97MADS-box protein AGL2 subfamily OS=Coffea arabica OX=13443 GN=C14 PE=2 SV=1[more]
tr|V9PDT1|V9PDT1_CUCME6.5e-7096.64MADS-box protein 5 OS=Cucumis melo OX=3656 GN=LOC103498850 PE=2 SV=1[more]
tr|A0A1S3CAN1|A0A1S3CAN1_CUCME6.5e-7096.64MADS-box protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498850 PE=4 SV=1[more]
tr|Q7Y039|Q7Y039_SOLLC1.1e-6995.30MADS-box protein 5 OS=Solanum lycopersicum OX=4081 GN=543885 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR033896MADS_MEF2-like
IPR036879TF_MADSbox_sf
IPR002487TF_Kbox
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05000-RACarg05000-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 86.34
coord: 3..23
score: 68.71
coord: 38..59
score: 67.51
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 1.3E-41
score: 154.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 1.0E-26
score: 92.0
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 33.515
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 91..144
e-value: 1.4E-17
score: 63.5
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 89..153
score: 11.176
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 13..78
e-value: 5.2E-30
score: 104.8
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 2..76
NoneNo IPR availablePANTHERPTHR11945:SF346SUBFAMILY NOT NAMEDcoord: 1..148
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..148
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..76
e-value: 4.29857E-43
score: 138.454

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05000Csa6G095270Cucumber (Chinese Long) v2carcuB0090
Carg05000MELO3C022315Melon (DHL92) v3.5.1carmeB0080
Carg05000ClCG06G002130Watermelon (Charleston Gray)carwcgB0082
Carg05000CSPI06G07820Wild cucumber (PI 183967)carcpiB0094
Carg05000Cucsa.349640Cucumber (Gy14) v1carcgyB0096
Carg05000CmaCh08G001720Cucurbita maxima (Rimu)carcmaB0112
Carg05000CmaCh17G014380Cucurbita maxima (Rimu)carcmaB0106
Carg05000CmoCh08G001750Cucurbita moschata (Rifu)carcmoB0119
Carg05000CmoCh17G013770Cucurbita moschata (Rifu)carcmoB0114
Carg05000Lsi09G017270Bottle gourd (USVL1VR-Ls)carlsiB070
Carg05000Cp4.1LG17g10640Cucurbita pepo (Zucchini)carcpeB0125
Carg05000CsGy6G007880Cucumber (Gy14) v2carcgybB0090
Carg05000MELO3C022315.2Melon (DHL92) v3.6.1carmedB0083
Carg05000CsaV3_6G008200Cucumber (Chinese Long) v3carcucB0097
Carg05000Cla97C06G111440Watermelon (97103) v2carwmbB0077
Carg05000Bhi12G002178Wax gourdcarwgoB0091
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg05000Carg11597Silver-seed gourdcarcarB010
The following block(s) are covering this gene:
GeneOrganismBlock
Carg05000Cucurbita pepo (Zucchini)carcpeB0127
Carg05000Wild cucumber (PI 183967)carcpiB0097
Carg05000Cucumber (Chinese Long) v2carcuB0093
Carg05000Cucumber (Chinese Long) v3carcucB0100
Carg05000Bottle gourd (USVL1VR-Ls)carlsiB073
Carg05000Melon (DHL92) v3.5.1carmeB0082
Carg05000Melon (DHL92) v3.6.1carmedB0081
Carg05000Watermelon (Charleston Gray)carwcgB0083
Carg05000Watermelon (97103) v1carwmB0083
Carg05000Watermelon (97103) v2carwmbB0078