Lsi09G016540 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCACCATATCCATCGTCCCTTTCAATTCCAATTCCTTACTAATTTTTTCATTGTTACTTTTTAACATCATGGCTGGTCAACTCCCACGTCCATGGTTCCGTTTGGGCTCAATGACCCGACCAACAACCGCCACAACCACCGCTCCGATCCCGGACCAACCGCGTCCAGTTCCACCCCGGGTTCGACCGCCCATAATCCGCCCCGCCGCCTTGACAGAGCCGGCAGAACCCACCACCCCACAGCGATCAAAATCCCCTCCTCACTTTCCTCGCCATGCCTCACCAGCTCCTACGGTGAAAAACGCAGCATCACCGCCGCACGTTCTTCCATCACCATCGAATGGACGGAGTGGTGGGACTGCAACGCCATCCCCGACCGCGAATCCTAGTACCCCAAAGGGAAGAAGCTCTTCAGTTGTAGGGTCTCCGACGACGAATAATAGTAAACAGCCGAGTCCGTTTCCGTCTCCTTCCATTCCCAAGTCCATACCGACCGTTCCGACACCGTATCAGTCACCGAAGCCGAAAGCCACCTCTTCTCCACCGTCACCGCTGATTTTACCGCCACCGCAGTTGCGGTCTGTTGGTGAGCCTAAACATGAGACTATTCCTCAAGAGGTAATGTTAATTTTACTACTAAGTTTTCTTTTTAAAGGTTCTTTAAGTTGATTGATTGAGATATTGTTGATATTCTTTTAAGATTTTATTCAGTAAACTTTTTGAAGGTTTATTGTTCATTCAACGTTTTTTTCCCTAAATTTCTTACCATGTTTTTTTTATGGTTGAAGTTCTTAAAAAAAAAAAAATATTGTAACATGTGGACATGAATTTGTTGGATTGATTTAGACGAGTACGAGAACAGCAAATATTACCATGTAAAATAATATAGGAATTTCCGAAATAGTTATTGAAACATTCACAACACTACGTACTATGTTTAAAAAAAAAAACTAAATAAAAAAATAAAAGTTTTTGACAAGTATTTATTTCTTTTAAATTAGACTAATAATTCAAATGTTAATTATTCCTTAAAGGAAGTTGAAAACACATTTTGGGAGGAAAGAGTTCAAAAACATAAAAGTTGATATAAAAGCAAGAGATGGCATCGGACGCTACTTTCTATAAGCACTTTTTTTTTTTTTTTTTGTCACGAAGTCAATCTAAACAGACTCTTAATTGTTTGAATTTATACCCGTTGAGACAATACAAAAAACAACATTGAATTCTCTTTATTAAGACTTGGTATATGTTTCCTGATTTTCATTTGAATCATCGTTTTAGTCCAAATTGCTCAAATTCTATAAATTAAGAAAATAAAACTAATAATAACTGGAGGGCTAAAAAGATATTGAACTGATATTTAACATTATTTTAATTTTACAGGTAGAACGAAAAACGGTTGTTTACCAAAAAGTGATGGACAAGACTTCACAAGCTGAGCATCATGTCACAAACTACCATAATAATGCCAATGAATTTGAGCAAAATGGGAAGCAAGAATCTAAAAAAAGTGATGAGAATCAAATTAGCAAAGACAAAGGAGGAACAATTGAAGGTAATAAAAAAGCAGCATTTGAGTCATCAAATGATAACACAAGAGTTATAACAATGGCAGGAGAAAACAAAGGAGCTTTCATGGAAATAGTTATGTCATCAGACAAAAACATCAACAGCCGCCATGAACAACAAAACCAAGCTGACAACAACGTTATTAATAGTCCTAAAGACAATAAAAGTAAAAAGAAAATTACAACTCGTAATGTAGTGCCTATGAAAGCATTTTTTAACAGCAACGTTCAAGGGATAAACAATTCAATTCTTATGGACTCCAAATTCACACACCATGATCCTGGGATTCATCTTGTTTTTTCCTCCATCCCACCATCTCCTGATGATGAAGATGATTAAGAACACCAATAAACAACAACTTCTTTGCTTTCCTCTTCATTAATTTGTGTCTCTTATAAGTTAATCATCTGTGTGTTCTTTTTTCTTATATATATATATTTGTTGTTGCTTTGAGAGAATAACGTATGGGAGTTAATTGAGAGTTATGATTCAGCCTAGACATTGAGAGTTGTTCTTGTTTGTTAATTAATGTTTAGTTTAATGCATATAATAAAATGGGCTGACATTTCTGTTTAA TTTCACCATATCCATCGTCCCTTTCAATTCCAATTCCTTACTAATTTTTTCATTGTTACTTTTTAACATCATGGCTGGTCAACTCCCACGTCCATGGTTCCGTTTGGGCTCAATGACCCGACCAACAACCGCCACAACCACCGCTCCGATCCCGGACCAACCGCGTCCAGTTCCACCCCGGGTTCGACCGCCCATAATCCGCCCCGCCGCCTTGACAGAGCCGGCAGAACCCACCACCCCACAGCGATCAAAATCCCCTCCTCACTTTCCTCGCCATGCCTCACCAGCTCCTACGGTGAAAAACGCAGCATCACCGCCGCACGTTCTTCCATCACCATCGAATGGACGGAGTGGTGGGACTGCAACGCCATCCCCGACCGCGAATCCTAGTACCCCAAAGGGAAGAAGCTCTTCAGTTGTAGGGTCTCCGACGACGAATAATAGTAAACAGCCGAGTCCGTTTCCGTCTCCTTCCATTCCCAAGTCCATACCGACCGTTCCGACACCGTATCAGTCACCGAAGCCGAAAGCCACCTCTTCTCCACCGTCACCGCTGATTTTACCGCCACCGCAGTTGCGGTCTGTTGGTGAGCCTAAACATGAGACTATTCCTCAAGAGGTAGAACGAAAAACGGTTGTTTACCAAAAAGTGATGGACAAGACTTCACAAGCTGAGCATCATGTCACAAACTACCATAATAATGCCAATGAATTTGAGCAAAATGGGAAGCAAGAATCTAAAAAAAGTGATGAGAATCAAATTAGCAAAGACAAAGGAGGAACAATTGAAGGTAATAAAAAAGCAGCATTTGAGTCATCAAATGATAACACAAGAGTTATAACAATGGCAGGAGAAAACAAAGGAGCTTTCATGGAAATAGTTATGTCATCAGACAAAAACATCAACAGCCGCCATGAACAACAAAACCAAGCTGACAACAACGTTATTAATAGTCCTAAAGACAATAAAAGTAAAAAGAAAATTACAACTCGTAATGTAGTGCCTATGAAAGCATTTTTTAACAGCAACGTTCAAGGGATAAACAATTCAATTCTTATGGACTCCAAATTCACACACCATGATCCTGGGATTCATCTTGTTTTTTCCTCCATCCCACCATCTCCTGATGATGAAGATGATTAAGAACACCAATAAACAACAACTTCTTTGCTTTCCTCTTCATTAATTTGTGTCTCTTATAAGTTAATCATCTGTGTGTTCTTTTTTCTTATATATATATATTTGTTGTTGCTTTGAGAGAATAACGTATGGGAGTTAATTGAGAGTTATGATTCAGCCTAGACATTGAGAGTTGTTCTTGTTTGTTAATTAATGTTTAGTTTAATGCATATAATAAAATGGGCTGACATTTCTGTTTAA ATGGCTGGTCAACTCCCACGTCCATGGTTCCGTTTGGGCTCAATGACCCGACCAACAACCGCCACAACCACCGCTCCGATCCCGGACCAACCGCGTCCAGTTCCACCCCGGGTTCGACCGCCCATAATCCGCCCCGCCGCCTTGACAGAGCCGGCAGAACCCACCACCCCACAGCGATCAAAATCCCCTCCTCACTTTCCTCGCCATGCCTCACCAGCTCCTACGGTGAAAAACGCAGCATCACCGCCGCACGTTCTTCCATCACCATCGAATGGACGGAGTGGTGGGACTGCAACGCCATCCCCGACCGCGAATCCTAGTACCCCAAAGGGAAGAAGCTCTTCAGTTGTAGGGTCTCCGACGACGAATAATAGTAAACAGCCGAGTCCGTTTCCGTCTCCTTCCATTCCCAAGTCCATACCGACCGTTCCGACACCGTATCAGTCACCGAAGCCGAAAGCCACCTCTTCTCCACCGTCACCGCTGATTTTACCGCCACCGCAGTTGCGGTCTGTTGGTGAGCCTAAACATGAGACTATTCCTCAAGAGGTAGAACGAAAAACGGTTGTTTACCAAAAAGTGATGGACAAGACTTCACAAGCTGAGCATCATGTCACAAACTACCATAATAATGCCAATGAATTTGAGCAAAATGGGAAGCAAGAATCTAAAAAAAGTGATGAGAATCAAATTAGCAAAGACAAAGGAGGAACAATTGAAGGTAATAAAAAAGCAGCATTTGAGTCATCAAATGATAACACAAGAGTTATAACAATGGCAGGAGAAAACAAAGGAGCTTTCATGGAAATAGTTATGTCATCAGACAAAAACATCAACAGCCGCCATGAACAACAAAACCAAGCTGACAACAACGTTATTAATAGTCCTAAAGACAATAAAAGTAAAAAGAAAATTACAACTCGTAATGTAGTGCCTATGAAAGCATTTTTTAACAGCAACGTTCAAGGGATAAACAATTCAATTCTTATGGACTCCAAATTCACACACCATGATCCTGGGATTCATCTTGTTTTTTCCTCCATCCCACCATCTCCTGATGATGAAGATGATTAA MAGQLPRPWFRLGSMTRPTTATTTAPIPDQPRPVPPRVRPPIIRPAALTEPAEPTTPQRSKSPPHFPRHASPAPTVKNAASPPHVLPSPSNGRSGGTATPSPTANPSTPKGRSSSVVGSPTTNNSKQPSPFPSPSIPKSIPTVPTPYQSPKPKATSSPPSPLILPPPQLRSVGEPKHETIPQEVERKTVVYQKVMDKTSQAEHHVTNYHNNANEFEQNGKQESKKSDENQISKDKGGTIEGNKKAAFESSNDNTRVITMAGENKGAFMEIVMSSDKNINSRHEQQNQADNNVINSPKDNKSKKKITTRNVVPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSSIPPSPDDEDD
BLAST of Lsi09G016540 vs. TrEMBL
Match: A0A0A0KAP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107920 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 6.9e-117 Identity = 268/387 (69.25%), Postives = 295/387 (76.23%), Query Frame = 1
BLAST of Lsi09G016540 vs. TrEMBL
Match: G7L524_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g117980 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22 Identity = 128/368 (34.78%), Postives = 180/368 (48.91%), Query Frame = 1
BLAST of Lsi09G016540 vs. TrEMBL
Match: A0A059CJ89_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02643 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22 Identity = 135/392 (34.44%), Postives = 179/392 (45.66%), Query Frame = 1
BLAST of Lsi09G016540 vs. TrEMBL
Match: B9GR50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17590g PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 4.9e-22 Identity = 123/357 (34.45%), Postives = 184/357 (51.54%), Query Frame = 1
BLAST of Lsi09G016540 vs. TrEMBL
Match: A0A0D2P782_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G111100 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 6.4e-22 Identity = 122/345 (35.36%), Postives = 175/345 (50.72%), Query Frame = 1
BLAST of Lsi09G016540 vs. TAIR10
Match: AT2G46630.1 (AT2G46630.1 unknown protein) HSP 1 Score: 97.1 bits (240), Expect = 2.4e-20 Identity = 129/404 (31.93%), Postives = 179/404 (44.31%), Query Frame = 1
BLAST of Lsi09G016540 vs. TAIR10
Match: AT1G75260.1 (AT1G75260.1 oxidoreductases, acting on NADH or NADPH) HSP 1 Score: 49.7 bits (117), Expect = 4.4e-06 Identity = 38/134 (28.36%), Postives = 65/134 (48.51%), Query Frame = 1
BLAST of Lsi09G016540 vs. NCBI nr
Match: gi|659119611|ref|XP_008459747.1| (PREDICTED: zyxin isoform X2 [Cucumis melo]) HSP 1 Score: 440.3 bits (1131), Expect = 3.3e-120 Identity = 265/375 (70.67%), Postives = 297/375 (79.20%), Query Frame = 1
BLAST of Lsi09G016540 vs. NCBI nr
Match: gi|778712181|ref|XP_011656858.1| (PREDICTED: probable serine/threonine-protein kinase samkC isoform X2 [Cucumis sativus]) HSP 1 Score: 437.6 bits (1124), Expect = 2.1e-119 Identity = 268/375 (71.47%), Postives = 295/375 (78.67%), Query Frame = 1
BLAST of Lsi09G016540 vs. NCBI nr
Match: gi|659119609|ref|XP_008459746.1| (PREDICTED: uncharacterized protein DDB_G0284459 isoform X1 [Cucumis melo]) HSP 1 Score: 431.4 bits (1108), Expect = 1.5e-117 Identity = 265/387 (68.48%), Postives = 297/387 (76.74%), Query Frame = 1
BLAST of Lsi09G016540 vs. NCBI nr
Match: gi|778712178|ref|XP_004140616.2| (PREDICTED: probable serine/threonine-protein kinase samkC isoform X1 [Cucumis sativus]) HSP 1 Score: 428.7 bits (1101), Expect = 9.9e-117 Identity = 268/387 (69.25%), Postives = 295/387 (76.23%), Query Frame = 1
BLAST of Lsi09G016540 vs. NCBI nr
Match: gi|502114064|ref|XP_004494849.1| (PREDICTED: mucin-5AC [Cicer arietinum]) HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24 Identity = 125/358 (34.92%), Postives = 172/358 (48.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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