Carg13876 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13876
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	vegetative cell wall protein gp1
Location	Cucurbita_argyrosperma_scaffold_042 : 469296 .. 471319 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTCAAGTTCCTCGTCCATGGTTCCGTTTGGGCTCTATGACCCGACCAACAACCGCCACAACCACCGCTCCAGTCACCGACCAACCGCGACCTGTCCCCCCTCGGATCCGCCCGCCCTTAATCCGAACCTCCTCCTTGACGGAGCTTGCAGAACCCACCACCCCCCAGCAATCTGCCAAATCGCCGCCGCAGTTACCTCGCCTAGCCCCACTAACCCCTCAGCCGAAAAAGGAAGCGTCGCCACCGCCACCGCCCCCGCCTTTGACCCGACCTGTTGTTACGTCCACTGCAGCGCCAAAACCCAGTAGCCCCAAGGGAAAAAGTCACTCGCTTGGAGGGTCTCCGCCGCGCAATGGCTCGTTTGATAAAGAAAGTAATAAACATCCCACCCCAGCTCCGTCTCCTTCTATTCCCAAGTCTATTCCGGCCGTTCCGTCGCCTTATCAGTCGCCGAAGCCGAAGCCTAAAGCCACCGCTTCGCCCCCGTCGCCGCTTGTTTTACCGCCACCGCAGTTGCAGTTTGTCGCCGAGCCTAGACCTGAGACCATTCCTCAAGAGGTAGTGTTAATTTAAGTTCATTGAGATTGGTGTGTTCTTAGCATCGACAAACTTTTGAAAATCGAGAGTAAAAATAGTAGGTTTAATGGGTCGAGGATGGTTGGGAGAGAGCATCACGTTAGCTAATTTAGGGAATGATCGTGTGTTTATAAGCACGAAATATGTCTTTATTGGTACGAGACCTTTAAAAACCATGAGAGCTTATGCTCAAATTCGACAATATCATATTATCGTGGAGAGTAGTGATTAGTAACATATGGTTTCAAAGCTATGCTTTAACTTAGTCATGTCAATCGAATTCTCAAACGTCGAACAAAGAAGTTGTAAACCTCGAGGGTATAGTAAAAAACGACTCAAGTGTCGAACAAAGGGTGTACTTTCTTCCAGGACTCTAGAGAAGGAATCAAGCCTCGATTAAGGGGAGGTTGTTTCTCGACTCCTTCCTATAGTCCTCGAACAAAGTACACCCTTTATTCGAGGGTTCGAGGGGAGGATTGTGGAGTCCCACCTTGACTAATTTAAGAAATAATCATGAGTTTATAAGTAAGGAATACATATTCATTGGTACGAGACCTTTTGGATACTCAAAGTGAACCATATCTTACCATTATGGAGAATCGTGATTTCTAACATAATCAGAGAACATGTTATCTTACCATTATGGAAAATCGTGATTTCTAACATAATCAGAGAACATGTTATCTTACCATTATGGAAAATCGTGATTTCTAACATAATCAATGAACAGGTAGAACGAAAGACGGTTGTTTTTCAAAAAGTGATGGAGAAGCCTTCACCGCCCGATCACGATATCAATAACTACAATTCCCAAGCATCTGGATTTGGCAAAAATGGGAAGAAACATGATGACAATCAAGACAAGGGAAATGGAGCCAAGAAACCGTTCGTGTCGTCCGGTGATAAAGACTCGAGCACAAGAGTTATAACAATGGCAGGAGAAAACAGAGGAGCTTCCATGGAAGTAGTTCTCTCAGACAAAAACAACAACAGCCGCCATCTTCAAATAAATCAAAGCGACAACGGAGACACCACCAACGATTCTAAAGACAACAAAAGTAACAAGAAATCAACGGCGTGTCGAAGTGCATGGCCAATGAAAGCTTTCTTTAACAGCAATGTTCAAGGGATTAACAATTCAATTCTGATGGACTCCAAATTCACCCACCACGACCCTGGGATTCATCTTGTCTTCTCCAAGATGCCGCCGCCATCTGCCCATCAGGAAGACGGCGGACAATAACCAAGTTGTCTTTGTTTCCTTTGATTTGTGTCTCTAAGTTCACTATCATCTGTGTTTATTTCTTTAATTTTATCCATATGTTTCTTTGACAGAATAAAATATGGGAGTTAATTGGGTGTTATAGGGTGAAAATTCTGGTTTGTTAAAGTCTAGAGTAAGGCATATTTAATAAAATCTTATGACTTTTGTTCATGTATCG

mRNA sequence

ATGGCCGGTCAAGTTCCTCGTCCATGGTTCCGTTTGGGCTCTATGACCCGACCAACAACCGCCACAACCACCGCTCCAGTCACCGACCAACCGCGACCTGTCCCCCCTCGGATCCGCCCGCCCTTAATCCGAACCTCCTCCTTGACGGAGCTTGCAGAACCCACCACCCCCCAGCAATCTGCCAAATCGCCGCCGCAGTTACCTCGCCTAGCCCCACTAACCCCTCAGCCGAAAAAGGAAGCGTCGCCACCGCCACCGCCCCCGCCTTTGACCCGACCTGTTGTTACGTCCACTGCAGCGCCAAAACCCAGTAGCCCCAAGGGAAAAAGTCACTCGCTTGGAGGGTCTCCGCCGCGCAATGGCTCGTTTGATAAAGAAAGTAATAAACATCCCACCCCAGCTCCGTCTCCTTCTATTCCCAAGTCTATTCCGGCCGTTCCGTCGCCTTATCAGTCGCCGAAGCCGAAGCCTAAAGCCACCGCTTCGCCCCCGTCGCCGCTTGTTTTACCGCCACCGCAGTTGCAGTTTGTCGCCGAGCCTAGACCTGAGACCATTCCTCAAGAGGTAGAACGAAAGACGGTTGTTTTTCAAAAAGTGATGGAGAAGCCTTCACCGCCCGATCACGATATCAATAACTACAATTCCCAAGCATCTGGATTTGGCAAAAATGGGAAGAAACATGATGACAATCAAGACAAGGGAAATGGAGCCAAGAAACCGTTCGTGTCGTCCGGTGATAAAGACTCGAGCACAAGAGTTATAACAATGGCAGGAGAAAACAGAGGAGCTTCCATGGAAGTAGTTCTCTCAGACAAAAACAACAACAGCCGCCATCTTCAAATAAATCAAAGCGACAACGGAGACACCACCAACGATTCTAAAGACAACAAAAGTAACAAGAAATCAACGGCGTGTCGAAGTGCATGGCCAATGAAAGCTTTCTTTAACAGCAATGTTCAAGGGATTAACAATTCAATTCTGATGGACTCCAAATTCACCCACCACGACCCTGGGATTCATCTTGTCTTCTCCAAGATGCCGCCGCCATCTGCCCATCAGGAAGACGGCGGACAATAACCAAGTTGTCTTTGTTTCCTTTGATTTGTGTCTCTAAGTTCACTATCATCTGTGTTTATTTCTTTAATTTTATCCATATGTTTCTTTGACAGAATAAAATATGGGAGTTAATTGGGTGTTATAGGGTGAAAATTCTGGTTTGTTAAAGTCTAGAGTAAGGCATATTTAATAAAATCTTATGACTTTTGTTCATGTATCG

Coding sequence (CDS)

ATGGCCGGTCAAGTTCCTCGTCCATGGTTCCGTTTGGGCTCTATGACCCGACCAACAACCGCCACAACCACCGCTCCAGTCACCGACCAACCGCGACCTGTCCCCCCTCGGATCCGCCCGCCCTTAATCCGAACCTCCTCCTTGACGGAGCTTGCAGAACCCACCACCCCCCAGCAATCTGCCAAATCGCCGCCGCAGTTACCTCGCCTAGCCCCACTAACCCCTCAGCCGAAAAAGGAAGCGTCGCCACCGCCACCGCCCCCGCCTTTGACCCGACCTGTTGTTACGTCCACTGCAGCGCCAAAACCCAGTAGCCCCAAGGGAAAAAGTCACTCGCTTGGAGGGTCTCCGCCGCGCAATGGCTCGTTTGATAAAGAAAGTAATAAACATCCCACCCCAGCTCCGTCTCCTTCTATTCCCAAGTCTATTCCGGCCGTTCCGTCGCCTTATCAGTCGCCGAAGCCGAAGCCTAAAGCCACCGCTTCGCCCCCGTCGCCGCTTGTTTTACCGCCACCGCAGTTGCAGTTTGTCGCCGAGCCTAGACCTGAGACCATTCCTCAAGAGGTAGAACGAAAGACGGTTGTTTTTCAAAAAGTGATGGAGAAGCCTTCACCGCCCGATCACGATATCAATAACTACAATTCCCAAGCATCTGGATTTGGCAAAAATGGGAAGAAACATGATGACAATCAAGACAAGGGAAATGGAGCCAAGAAACCGTTCGTGTCGTCCGGTGATAAAGACTCGAGCACAAGAGTTATAACAATGGCAGGAGAAAACAGAGGAGCTTCCATGGAAGTAGTTCTCTCAGACAAAAACAACAACAGCCGCCATCTTCAAATAAATCAAAGCGACAACGGAGACACCACCAACGATTCTAAAGACAACAAAAGTAACAAGAAATCAACGGCGTGTCGAAGTGCATGGCCAATGAAAGCTTTCTTTAACAGCAATGTTCAAGGGATTAACAATTCAATTCTGATGGACTCCAAATTCACCCACCACGACCCTGGGATTCATCTTGTCTTCTCCAAGATGCCGCCGCCATCTGCCCATCAGGAAGACGGCGGACAATAA

Protein sequence

MAGQVPRPWFRLGSMTRPTTATTTAPVTDQPRPVPPRIRPPLIRTSSLTELAEPTTPQQSAKSPPQLPRLAPLTPQPKKEASPPPPPPPLTRPVVTSTAAPKPSSPKGKSHSLGGSPPRNGSFDKESNKHPTPAPSPSIPKSIPAVPSPYQSPKPKPKATASPPSPLVLPPPQLQFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKPFVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINQSDNGDTTNDSKDNKSNKKSTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ

Homology

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BLAST of Carg13876 vs. NCBI nr
Match: XP_022964490.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 473.4 bits (1217), Expect = 6.8e-130
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTELAEPTTPQQS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTELAEPTTPQQS 60

Query: 61  AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP 180
           GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP
Sbjct: 121 GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXXXXXXXXXXXXXXXXXX 300
           FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXXXXXXXXXXXXXXXXXX
Sbjct: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXXXXXXXXXXXXXXXXXX 300

Query: 301 XXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           XXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ
Sbjct: 301 XXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 358

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BLAST of Carg13876 vs. NCBI nr
Match: XP_022999909.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 377.5 bits (968), Expect = 5.1e-101
Identity = 311/358 (86.87%), Postives = 313/358 (87.43%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATTTAPV   XXXXXXXXXXXXXRT+SLTELAEPTTP QS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVXXXXXXXXXXXXXXXXRTTSLTELAEPTTPLQS 60

Query: 61  AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP 180
           GSFDKESNKH    XXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AEP
Sbjct: 121 GSFDKESNKHPTPVXXXXXXXXXXAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETI QEVERKTVVFQKVMEKPSPPDHDINNY+SQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETILQEVERKTVVFQKVMEKPSPPDHDINNYHSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXXXXXXXXXXXXXXXXXX 300
           FVSSGDKDSSTRVI                            XXXXXXXXXXXXXXXXXX
Sbjct: 241 FVSSGDKDSSTRVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           XX  C SAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQE GGQ
Sbjct: 301 XXXXCSSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEHGGQ 358

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BLAST of Carg13876 vs. NCBI nr
Match: XP_023513718.1 (proline-rich receptor-like protein kinase PERK8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 4.0e-98
Identity = 311/358 (86.87%), Postives = 312/358 (87.15%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTELAEPTTPQQS 60
           MAGQVPRPWFRLGSMTRPTTATT       XXXXXXXXXXXX RT+SLTELAEPTTPQQS
Sbjct: 1   MAGQVPRPWFRLGSMTRPTTATTXXXXXXXXXXXXXXXXXXXIRTTSLTELAEPTTPQQS 60

Query: 61  AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN 120
           AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN
Sbjct: 61  AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN 120

Query: 121 GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP 180
           GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP
Sbjct: 121 GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240
           RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP
Sbjct: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKKHDDNQDKGNGAKKP 240

Query: 241 FVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXXXXXXXXXXXXXXXXXX 300
           FVSSGDKD                                  XXXXXXXXXXXXXXXXXX
Sbjct: 241 FVSSGDKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 359
           XX   R AWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ
Sbjct: 301 XXXXGRGAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKMPPPSAHQEDGGQ 358

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BLAST of Carg13876 vs. NCBI nr
Match: XP_023006599.1 (probable serine/threonine-protein kinase samkC isoform X2 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 5.0e-48
Identity = 177/365 (48.49%), Postives = 205/365 (56.16%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTELAEPTTPQQS 60
           MA Q+PRPWFRLGS+TRPTT  TT P TDQ             RT+S TE AEPTTPQQS
Sbjct: 1   MAAQLPRPWFRLGSLTRPTTGATTGPGTDQPRPVPARIRPPVIRTASFTEPAEPTTPQQS 60

Query: 61  AKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSPPRN 120
            KSPP            XXXXXXXXXXXXXXXXXXXXXXX        K      SP +N
Sbjct: 61  -KSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKHI----SPTKN 120

Query: 121 GSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVAEP 180
              +K+S K                                XXX            V EP
Sbjct: 121 ELVNKDSRKQASPVSSPLVPKSIPAVPTPYQSPKPKTAASPXXXLTLPPPQLQS--VDEP 180

Query: 181 RPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKK------HDDNQDKG 240
           + ETIPQ VERKTVVFQKV++K S  +HDI +Y+++A+ FG+NGK+       D+++DK 
Sbjct: 181 KHETIPQAVERKTVVFQKVIDKASQAEHDIASYHTRAAEFGQNGKQEPKKSDEDESKDKA 240

Query: 241 NGAKKPFV-SSGDKD--SSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXXXXXXXXX 300
            GA K  + SS DKD  ++T+VITMAG+N GA ME+ LSDKN        N         
Sbjct: 241 IGATKALLESSNDKDTNTNTKVITMAGKNNGAFMEIFLSDKNKXXXXXTTN--------N 300

Query: 301 XXXXXXXXXXXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFSKM-PPPS 356
                         R+  PMKAFFNSNVQGINNSILMDSKFTHHDPGIHL+FS M PPPS
Sbjct: 301 NLKDNKSTKKTIRTRNGVPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLLFSPMPPPPS 350

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BLAST of Carg13876 vs. NCBI nr
Match: XP_023006596.1 (serine/arginine repetitive matrix protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 181/372 (48.66%), Postives = 209/372 (56.18%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTELAEPTTPQQS 60
           MA Q+PRPWFRLGS+TRPTT  TT P TDQ             RT+S TE AEPTTPQQS
Sbjct: 1   MAAQLPRPWFRLGSLTRPTTGATTGPGTDQPRPVPARIRPPVIRTASFTEPAEPTTPQQS 60

Query: 61  AKSPP-------QLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSL 120
            KSPP                   XXXXXXXXXXXXXXXXXXXXXXX             
Sbjct: 61  -KSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 GGSPPRNGSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
             SP +N   +K+S K                         XX   XXXXXX        
Sbjct: 121 XXSPTKNELVNKDSRKQASPVSSPLVPKSIPAVPTPYQSPKXXTAAXXXXXXTLPPPQLQ 180

Query: 181 XXFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDHDINNYNSQASGFGKNGKK------H 240
              V EP+ ETIPQ VERKTVVFQKV++K S  +HDI +Y+++A+ FG+NGK+       
Sbjct: 181 S--VDEPKHETIPQAVERKTVVFQKVIDKASQAEHDIASYHTRAAEFGQNGKQEPKKSDE 240

Query: 241 DDNQDKGNGAKKPFV-SSGDKD--SSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXX 300
           D+++DK  GA K  + SS DKD  ++T+VITMAG+N GA ME+ LSDKN        N  
Sbjct: 241 DESKDKAIGATKALLESSNDKDTNTNTKVITMAGKNNGAFMEIFLSDKNKXXXXXTTN-- 300

Query: 301 XXXXXXXXXXXXXXXXXXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFS 356
                                R+  PMKAFFNSNVQGINNSILMDSKFTHHDPGIHL+FS
Sbjct: 301 ------NNLKDNKSTKKTIRTRNGVPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLLFS 360

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BLAST of Carg13876 vs. TAIR10
Match: AT2G46630.1 (unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-12
Identity = 61/128 (47.66%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 238 KKPFVSSGDKDSSTRVITMAGENRGASMEVVLSDKNNNS------------------RHL 297
           ++P  S  +   STRVIT+AGEN+GA ME++ S + N +                  R L
Sbjct: 249 RQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHGTGEKGRRL 308

Query: 298 QINXXXXXXXXXXXXXXXXXXXXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGI 348
           Q  XXXXXXXXXXXXXX          S  PMKAF NSNVQ INNSI+ +S  +HHDPG+
Sbjct: 309 QXXXXXXXXXXXXXXXXTKNVPNKG-NSNLPMKAFMNSNVQMINNSIVYNSTASHHDPGV 368

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BLAST of Carg13876 vs. TAIR10
Match: AT1G75260.1 (oxidoreductases, acting on NADH or NADPH)

HSP 1 Score: 48.5 bits (114), Expect = 9.8e-06
Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 0


Query: 243 SSGDKDSSTRVITMAGENRGASMEV-VLSDKNNNSRHLQIN-XXXXXXXXXXXXXXXXXX 302
           S+GD D S  V T+ GEN+GA+M +    DK +   H++                     
Sbjct: 336 SNGD-DKSVSVYTLTGENKGATMGIGSEKDKKDGEVHIRRGYRSNPDESSNTTATETENP 395

Query: 303 XXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVF 344
                       A+ N N QGINNSI+++S  + +DPG+H+ F
Sbjct: 396 KDDEAEEEASFTAYINGNTQGINNSIVVESSVSENDPGVHMSF 437

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BLAST of Carg13876 vs. TAIR10
Match: AT1G63310.1 (unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-05
Identity = 29/99 (29.29%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 246 DKDSSTRVITMAGENRGASMEVVLSDKNNNSRHLQINXXXXXXXXXXXXXXXXXXXXTAC 305
           +++   RVIT++G N GA+M+  L D N+  R    +                       
Sbjct: 45  EEEDGIRVITLSGSNLGATMKTEL-DNNHGDRDQNGDHELDF------------------ 104

Query: 306 RSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVFS 345
                +  + NSN Q +NNSI++ +K+  HDPG+HL  S
Sbjct: 105 -----LSTYVNSNFQAVNNSIMIGAKYETHDPGVHLDIS 119

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BLAST of Carg13876 vs. TrEMBL
Match: tr|A0A0A0KAP9|A0A0A0KAP9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107920 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.4e-29
Identity = 97/202 (48.02%), Postives = 117/202 (57.92%), Query Frame = 0


Query: 177 VAEPRPETIPQEVERKTVVFQKVMEKPSPPD----HDINNYNSQASGFGKNGKKHDDNQD 236
           VAE + ETIPQEVERKTVVFQKVM+KPS  +     +I NY +  S F KNGK+  +  D
Sbjct: 180 VAETKDETIPQEVERKTVVFQKVMDKPSQAEEHHLQNITNYRTHTSEFDKNGKQESNKGD 239

Query: 237 KGNGAKKPFV----------------SSGDKDSSTRVITMAGENRGASMEVVLSDKNNNS 296
            G+                       ++ D D++TRVITMAGEN+GA ME+ LS      
Sbjct: 240 DGDRDXXXXXXXXXXXXXXXXXXYKRTAFDHDNNTRVITMAGENKGAFMEINLSSXXXXX 299

Query: 297 RHLQINXXXXXXXXXXXXXXXXXXXXT---ACRSAWPMKAFFNSNVQGINNSILMDSKFT 356
                 XXXXXXX             T     R+  PM+AFFNSNVQGINNSILMDSKF+
Sbjct: 300 XXXXXXXXXXXXXVVSVKDSNKSINKTKGIKTRNVLPMRAFFNSNVQGINNSILMDSKFS 359

[Close]

BLAST of Carg13876 vs. TrEMBL
Match: tr|A0A1S3CAE9|A0A1S3CAE9_CUCME (zyxin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498789 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 182/381 (47.77%), Postives = 209/381 (54.86%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTE---LAEPTTP 60
           MA Q+PRPWFRLGSMTRP    TT P  +Q             R ++LT+          
Sbjct: 1   MASQLPRPWFRLGSMTRP----TTTPNPEQPRPVPARVRPPIIRPAALTDPXXXXXXXXX 60

Query: 61  QQSAKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKSHSLGGSP 120
                               XXXX  XXX                P+SPK KS S+ GSP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXVLXXXSSGQGGGTAMASPAVNPNSPKEKSSSVVGSP 120

Query: 121 PRNGSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFV 180
               S  K+ +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          V
Sbjct: 121 KTINS--KQPSPFPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLQS------V 180

Query: 181 AEPRPETIPQEVERKTVVFQKVMEKPSPPDH----DINNYNSQASG-FGKNGKKHDDNQD 240
           AE + ETIPQEVERKTVVFQKVM+KPS  +     +I NY +  SG F KNGK+  +  D
Sbjct: 181 AETKHETIPQEVERKTVVFQKVMDKPSQEEEHHHLNITNYRTHTSGLFDKNGKQESNKGD 240

Query: 241 KGN--------------GAKKPFVSSG-DKDSSTRVITMAGENRGASMEVVLSDKNNNSR 300
            G+              G    F  +  D D+  RVITMAGEN+GA ME+ LS       
Sbjct: 241 DGDHVENGVSKNKGTIFGGNSNFKRTAFDHDNHARVITMAGENKGAFMEINLSSDXXXXX 300

Query: 301 HLQINXXXXXXXXXXXXXXXXXXXXTA---CRSAWPMKAFFNSNVQGINNSILMDSKFTH 356
                XXXXXXXXXXXXXXXX    T     R+  PM+AFFNSNVQGINNSILMDSKF+H
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXSKNKTKGSNTRNVLPMRAFFNSNVQGINNSILMDSKFSH 360

[Close]

BLAST of Carg13876 vs. TrEMBL
Match: tr|A0A1S3CC40|A0A1S3CC40_CUCME (zyxin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498789 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 171/392 (43.62%), Postives = 197/392 (50.26%), Query Frame = 0


Query: 1   MAGQVPRPWFRLGSMTRPTTATTTAPVTDQXXXXXXXXXXXXXRTSSLTE---------- 60
           MA Q+PRPWFRLGSMTRP    TT P  +Q             R ++LT+          
Sbjct: 1   MASQLPRPWFRLGSMTRP----TTTPNPEQPRPVPARVRPPIIRPAALTDPXXXXXXXXX 60

Query: 61  LAEPTTPQQSAKSPPQLPRLAPLTPQPXXXXXXXXXXXXXXXXXXXXXXXPKPSSPKGKS 120
                               +PL   P                         P+SPK KS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXASPLRVLPSPSSGQGGGTAMASPAV-------NPNSPKEKS 120

Query: 121 HSLGGSP----PRNGSFDKESNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
            S+ GSP                              XXXXXXXX  XXXXXXXXXXXXX
Sbjct: 121 SSVVGSPKGXXXXXXXXXXXXXXSKQPSPFPSPSIPKXXXXXXXXYQXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXFVAEPRPETIPQEVERKTVVFQKVMEKPSPPDH----DINNYNSQASG-FG 240
           XXXXXX    VAE + ETIPQEVERKTVVFQKVM+KPS  +     +I NY +  SG F 
Sbjct: 181 XXXXXXQLQSVAETKHETIPQEVERKTVVFQKVMDKPSQEEEHHHLNITNYRTHTSGLFD 240

Query: 241 KNGKKHDDNQDKGN--------------GAKKPFVSSG-DKDSSTRVITMAGENRGASME 300
           KNGK+  +  D G+              G    F  +  D D+  RVITMAGEN+GA ME
Sbjct: 241 KNGKQESNKGDDGDHVENGVSKNKGTIFGGNSNFKRTAFDHDNHARVITMAGENKGAFME 300

Query: 301 VVLSDKNNNSRHLQINXXXXXXXXXXXXXXXXXXXXTA---CRSAWPMKAFFNSNVQGIN 356
           + LS            XXXXXXXXXXXXXXXX    T     R+  PM+AFFNSNVQGIN
Sbjct: 301 INLSSDXXXXXXXXXXXXXXXXXXXXXXXXXXSKNKTKGSNTRNVLPMRAFFNSNVQGIN 360

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BLAST of Carg13876 vs. TrEMBL
Match: tr|A0A2P5YBS4|A0A2P5YBS4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07677 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 68/184 (36.96%), Postives = 95/184 (51.63%), Query Frame = 0


Query: 178 AEPRPETIPQEVERKTVVFQKVMEKP----SPPDHDINNYNSQASGFGKNGKKHDDNQDK 237
           AE  P+ IP E E+KTV+ QK++EKP      P+ D+ +    +    K   K+ D ++K
Sbjct: 217 AELEPK-IPAEAEQKTVLVQKMIEKPRGLFGAPEKDVGDIRDPSIHGKKEPSKYGDTKEK 276

Query: 238 GNGAKKPFVSSGDKDSSTRVITMAGENRGASMEVVLSDKNN----------NSRHLQINX 297
           GNG K P   S  +D+  RVIT+AGEN+GA ME++ S   N          NS  +  + 
Sbjct: 277 GNGKKFP---SDSEDAGMRVITIAGENKGAFMELIKSPPKNGFQGSPHRLANSSRIGSDG 336

Query: 298 XXXXXXXXXXXXXXXXXXXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVF 348
                              +   +  PM AF NSNVQG+NNSI+ +S  THHDPG+HL  
Sbjct: 337 TDYHSYSSSEDGDGKMKGKSNGSNTMPMNAFMNSNVQGVNNSIVYNSSCTHHDPGVHLSL 396

[Close]

BLAST of Carg13876 vs. TrEMBL
Match: tr|A0A1U8L3L8|A0A1U8L3L8_GOSHI (proteoglycan 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107923568 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 67/184 (36.41%), Postives = 95/184 (51.63%), Query Frame = 0


Query: 178 AEPRPETIPQEVERKTVVFQKVMEKP----SPPDHDINNYNSQASGFGKNGKKHDDNQDK 237
           AE  P+ IP E E+KTV+ QK++EKP      P+ D+ +    +    K   K+ D ++K
Sbjct: 217 AELEPK-IPAEAEQKTVLVQKMIEKPRGLFGAPEKDVGDIRDPSIHGKKEPSKYGDTKEK 276

Query: 238 GNGAKKPFVSSGDKDSSTRVITMAGENRGASMEVVLSDKNN----------NSRHLQINX 297
           GNG K P   S  +D+  RVIT+AGEN+GA ME++ S   N          NS  +  + 
Sbjct: 277 GNGKKFP---SDSEDAGMRVITIAGENKGAFMELIKSPPKNGFQGSPHRLANSSRIGSDG 336

Query: 298 XXXXXXXXXXXXXXXXXXXTACRSAWPMKAFFNSNVQGINNSILMDSKFTHHDPGIHLVF 348
                              +   +  PM AF N+NVQG+NNSI+ +S  THHDPG+HL  
Sbjct: 337 TDYHSYSSSEDGDGKMKGKSNGSNTMPMNAFMNNNVQGVNNSIVYNSSCTHHDPGVHLSL 396

The following BLAST results are available for this feature:

BLAST of Carg13876 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964490.1	6.8e-130	100.00	extensin-like [Cucurbita moschata]	[more]
XP_022999909.1	5.1e-101	86.87	extensin-like [Cucurbita maxima]	[more]
XP_023513718.1	4.0e-98	86.87	proline-rich receptor-like protein kinase PERK8 [Cucurbita pepo subsp. pepo]	[more]
XP_023006599.1	5.0e-48	48.49	probable serine/threonine-protein kinase samkC isoform X2 [Cucurbita maxima]	[more]
XP_023006596.1	1.6e-46	48.66	serine/arginine repetitive matrix protein 1 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg13876 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46630.1	1.9e-12	47.66	unknown protein	[more]
AT1G75260.1	9.8e-06	31.07	oxidoreductases, acting on NADH or NADPH	[more]
AT1G63310.1	3.7e-05	29.29	unknown protein	[more]

BLAST of Carg13876 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13876 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAP9\|A0A0A0KAP9_CUCSA	3.4e-29	48.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107920 PE=4 SV=1	[more]
tr\|A0A1S3CAE9\|A0A1S3CAE9_CUCME	1.1e-27	47.77	zyxin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498789 PE=4 SV=1	[more]
tr\|A0A1S3CC40\|A0A1S3CC40_CUCME	3.2e-27	43.62	zyxin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498789 PE=4 SV=1	[more]
tr\|A0A2P5YBS4\|A0A2P5YBS4_GOSBA	1.0e-17	36.96	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07677 PE=4 SV...	[more]
tr\|A0A1U8L3L8\|A0A1U8L3L8_GOSHI	2.3e-17	36.41	proteoglycan 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107923568 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13876-RA	Carg13876-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..117
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 6..347
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 6..347

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13876	CmaCh08G008560	Cucurbita maxima (Rimu)	carcmaB0842
Carg13876	CmoCh08G008250	Cucurbita moschata (Rifu)	carcmoB0820
Carg13876	Lsi09G016540	Bottle gourd (USVL1VR-Ls)	carlsiB545
Carg13876	Cp4.1LG17g04500	Cucurbita pepo (Zucchini)	carcpeB0851

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13876	Cucumber (Gy14) v2	carcgybB0603
Carg13876	Cucumber (Gy14) v1	carcgyB0677
Carg13876	Cucurbita maxima (Rimu)	carcmaB0841
Carg13876	Cucurbita moschata (Rifu)	carcmoB0819
Carg13876	Cucurbita pepo (Zucchini)	carcpeB0850
Carg13876	Wild cucumber (PI 183967)	carcpiB0637
Carg13876	Cucumber (Chinese Long) v2	carcuB0631
Carg13876	Cucumber (Chinese Long) v3	carcucB0638
Carg13876	Melon (DHL92) v3.5.1	carmeB0603
Carg13876	Melon (DHL92) v3.6.1	carmedB0609
Carg13876	Watermelon (Charleston Gray)	carwcgB0586
Carg13876	Watermelon (97103) v1	carwmB0601
Carg13876	Watermelon (97103) v2	carwmbB0628
Carg13876	Wax gourd	carwgoB0713