Lsi09G009540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G009540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	60S ribosomal protein L30
Location	chr09 : 12371379 .. 12373222 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTGATTCAGTTTTAGGTTTTATTTTGTATTTTTTACACTTTTCTGTATTTCGATCTGTGAAAATACAGGGAAGCTTATTATTCTATCGAATAACTACCCGCCTGAGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACAATAACGGAAGTAAGTTTCGTAGGGACTCTGCTTAGTTATTTGGTTGTTTATTTGTCCAATAAGCACGATTTTTCTGCTTTATAACATTTTGGAGCTTCGTGTGCACGATTTCTGATATATGGGACTTGACTGCTCTCTTTTCTTGTATTATATTATCACATCTTTTATTGTTATAGAATTATAGAATAAGAAAAAACGTCTTATATTTAAAGCTGACAACTCCGTATTAGAGGTAGCATTTTGCATAATGTGGACAAGAATTTACTCTGTTTGTAATTGTAAATTTAAGTAACTTGATCAATTAGGTAATGACTGGGTATTCTGCTACGAAGAGTGCTCATAATGGGCTTTCCATGTTTAAATAAACTAATAATTCAGTGTGTAGTTCGTCCTAACTCGAATCTTTGAGGAACTATTAGCAAAGTAGGCGCTTCTTGCTACCTAAGAAGCAAGACAAGGATATGATACAAAACATAGATGCAAGGACGTATCAATTTTTGAAAATCTAGGACTCAAACACAACTAAAATATGTTTACTAAAACTTACATTATTTGAAATACATATTATTTTGGTAATTCAAAGTCAACAAGTTAATGCATTTATATGCTAAAAAATGAGTTCAATTTATTATTTTGTTCTACACAACTACGTTATTATGCATTTGTTTAATATACTTAACAAGTATTCGTATGTTTAACAAATGATGGACCTACATAGATCTTGTTAAACTATTCAACACAAATATTGTTCTAACAAAGTGTCTGAGTGTCCAGGCGTTGTACATGGAGGTTCTAGCCGAACTAAAATGTCTATGCTTCTTAGTTTCATACTTTCCTATCGATTTGCTACCATTGTCTTCAACAATTGTTATGATCTTGGTATGTAGCCTATTGAATAAAATAGGTGGGTTGCTTTCATTAGTGGTTATTGGTTTTTTCTTACTCATATTTACGTTGGTCAACCAATTTAATCTTTTTTTCATTCCATTTATACATCTTTAGTTTAAACATTTGTCTGTAAGTTGGACCTGTATGCTCGGTTGTTCTGCTTTACTTTTATGTATTTTTCATATGATTATTTGTATGTTTTCTTTCTTCTGTCTTATACATTATTTCTGTTACTTGGGTGTACGTTTAGGTAATGTCGATCTTGGAACTGCTTGTGGCAAGTATTATCGTGTGTCCTGCCTCAGCATTATTGATCCAGGTACTACAAATTTGCTATTTGGTTGATGAAATTTCATTTCTATGTCATTATGGTGATCCTAAATTTCAGCTCTTGAAGTTTGCATAAAAATTTAAACAAAAATTTGTTGCAATGGCATTTGTTTTTCCTTTACTCTATGGGTTAATTTCTTACTGGGAGTAGATATTTTCTGTGGACAAGTGTTTAAGAGAACACATGTAGTTGGGTGTTGGGTATTGAAATATATTTAATCTTTTTTGGCTAAATGATAAATAAAAAAACTAGTTGTTTCTTATCGAATTATTGAAATTTAGATGCTACACTTTTAAAGTAGGCACCAAAATAATAAATCTGTTATCAAAATAGAAATAGTGAAACATTGAGCTGCCTTATACTTGTCCTTTCATGATTGGTTTTACCAAGTCTATTTTCCCTCTATTCTTTTCCAGGTGATTCTGATATTATCAAATCGCTTCCCGATGATCAGTGA

mRNA sequence

ATGGCGTTTTATTTTGTATTTTTTACACTTTTCTGTATTTCGATCTGTGAAAATACAGGGAAGCTTATTATTCTATCGAATAACTACCCGCCTGAGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACAATAACGGAAGTAATGTCGATCTTGGAACTGCTTGTGGCAAGTATTATCGTGTGTCCTGCCTCAGCATTATTGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGATGATCAGTGA

Coding sequence (CDS)

ATGGCGTTTTATTTTGTATTTTTTACACTTTTCTGTATTTCGATCTGTGAAAATACAGGGAAGCTTATTATTCTATCGAATAACTACCCGCCTGAGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACAATAACGGAAGTAATGTCGATCTTGGAACTGCTTGTGGCAAGTATTATCGTGTGTCCTGCCTCAGCATTATTGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGATGATCAGTGA

Protein sequence

MAFYFVFFTLFCISICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPDDQ

Homology

[Close]

BLAST of Lsi09G009540 vs. Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-30
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLII++NN PP RKSEIEYYAMLAK+GVHH NG+NVDLGTACGKYYRV CLSI
Sbjct: 37  SLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIK+LP DQ
Sbjct: 97  VDPGDSDIIKTLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-29
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLI++S N PP R+SEIEYYAMLAK+GVHH NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIKS+P DQ
Sbjct: 97  VDPGDSDIIKSIPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.3e-29
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  N GKLII++NN PP RKSEIEYYAMLAK+GVHH NG+NVDLGTACGKY+RV CLSI
Sbjct: 37  SLRSNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSI 96

Query: 74  IDPGDSDIIKSLPDD 89
           ID GDSDIIKS+P D
Sbjct: 97  IDAGDSDIIKSIPGD 111

[Close]

BLAST of Lsi09G009540 vs. Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-29
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLI++S+N PP R+SEIEYYAMLAK+GVHH N +NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIKSLP DQ
Sbjct: 97  VDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-28
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLI++S+N PP R+SEIEYYAMLAK+GVH  NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIK+LP DQ
Sbjct: 97  VDPGDSDIIKTLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. TrEMBL
Match: A0A0A0KQ98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409620 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.9e-30
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 20  GKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSIIDPGDS 79
           GKLIILSNN PP RKSEIEYYAMLAKIGVHH NGSNVDLGTACGKYYRVSCLSIIDPGDS
Sbjct: 43  GKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDS 102

Query: 80  DIIKSLPDDQ 90
           DIIKSLP DQ
Sbjct: 103 DIIKSLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. TrEMBL
Match: A0A067LPS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24109 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.7e-29
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLII+SNN PP RKSEIEYYAML+K+GVHH NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRSSKGKLIIISNNCPPLRKSEIEYYAMLSKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           IDPGDSDIIKSLP DQ
Sbjct: 97  IDPGDSDIIKSLPSDQ 112

[Close]

BLAST of Lsi09G009540 vs. TrEMBL
Match: A0A067ESL9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047379mg PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLIILSNN PP RKSEIEYYAMLAK+GVHH NG+NVDLGTACGKY+RVSCLSI
Sbjct: 79  SLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI 138

Query: 74  IDPGDSDIIKSLPDD 89
           IDPGDSDIIKSLP D
Sbjct: 139 IDPGDSDIIKSLPGD 153

[Close]

BLAST of Lsi09G009540 vs. TrEMBL
Match: V4S5A9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006263mg PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLIILSNN PP RKSEIEYYAMLAK+GVHH NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDD 89
           IDPGDSDIIKSLP D
Sbjct: 97  IDPGDSDIIKSLPGD 111

[Close]

BLAST of Lsi09G009540 vs. TrEMBL
Match: A0A072TK88_MEDTR (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein OS=Medicago truncatula GN=MTR_0024s0220 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  N GKLII++NN PP RKSEIEYYAMLAK+GVHH NG+NVDLGTACGKYYRV CLSI
Sbjct: 37  SLRNNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIK++P DQ
Sbjct: 97  VDPGDSDIIKTIPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. TAIR10
Match: AT1G77940.1 (AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-30
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLI++S N PP R+SEIEYYAMLAK+GVHH NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIKS+P DQ
Sbjct: 97  VDPGDSDIIKSIPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. TAIR10
Match: AT1G36240.1 (AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-30
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLI++S+N PP R+SEIEYYAMLAK+GVHH N +NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIKSLP DQ
Sbjct: 97  VDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. TAIR10
Match: AT3G18740.1 (AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 126.7 bits (317), Expect = 7.1e-30
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLI++S+N PP R+SEIEYYAMLAK+GVH  NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           +DPGDSDIIK+LP DQ
Sbjct: 97  VDPGDSDIIKTLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. NCBI nr
Match: gi|659121096|ref|XP_008460497.1| (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-30
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           +I  + GKLIILSNN PP RKSEIEYYAMLAKIGVHH NGSNVDLGTACGKYYRVSCLSI
Sbjct: 37  TIRSSKGKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           IDPGDSDIIKSLP DQ
Sbjct: 97  IDPGDSDIIKSLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. NCBI nr
Match: gi|449445100|ref|XP_004140311.1| (PREDICTED: 60S ribosomal protein L30 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 20  GKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSIIDPGDS 79
           GKLIILSNN PP RKSEIEYYAMLAKIGVHH NGSNVDLGTACGKYYRVSCLSIIDPGDS
Sbjct: 43  GKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDS 102

Query: 80  DIIKSLPDDQ 90
           DIIKSLP DQ
Sbjct: 103 DIIKSLPGDQ 112

[Close]

BLAST of Lsi09G009540 vs. NCBI nr
Match: gi|802537338|ref|XP_012064688.1| (PREDICTED: 60S ribosomal protein L30-like [Jatropha curcas])

HSP 1 Score: 134.4 bits (337), Expect = 9.6e-29
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLII+SNN PP RKSEIEYYAML+K+GVHH NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRSSKGKLIIISNNCPPLRKSEIEYYAMLSKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDDQ 90
           IDPGDSDIIKSLP DQ
Sbjct: 97  IDPGDSDIIKSLPSDQ 112

[Close]

BLAST of Lsi09G009540 vs. NCBI nr
Match: gi|567855309|ref|XP_006420774.1| (hypothetical protein CICLE_v10006263mg [Citrus clementina])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLIILSNN PP RKSEIEYYAMLAK+GVHH NG+NVDLGTACGKY+RVSCLSI
Sbjct: 37  SLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDD 89
           IDPGDSDIIKSLP D
Sbjct: 97  IDPGDSDIIKSLPGD 111

[Close]

BLAST of Lsi09G009540 vs. NCBI nr
Match: gi|1009140443|ref|XP_015887655.1| (PREDICTED: 60S ribosomal protein L30 [Ziziphus jujuba])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 14  SICENTGKLIILSNNYPPERKSEIEYYAMLAKIGVHHNNGSNVDLGTACGKYYRVSCLSI 73
           S+  + GKLII+SNN PP RKSEIEYYAMLAKIGVHH NG+NVDLGTACGKYYRVSCLSI
Sbjct: 37  SLRNSKGKLIIISNNCPPLRKSEIEYYAMLAKIGVHHYNGNNVDLGTACGKYYRVSCLSI 96

Query: 74  IDPGDSDIIKSLPDD 89
           +DPGDSDIIKS+P D
Sbjct: 97  LDPGDSDIIKSMPGD 111

The following BLAST results are available for this feature:

BLAST of Lsi09G009540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL30_LUPLU	3.0e-30	78.95	60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1	[more]
RL302_ARATH	2.5e-29	76.32	60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1	[more]
RL30_EUPES	4.3e-29	78.67	60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1	[more]
RL301_ARATH	5.6e-29	76.32	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1	[more]
RL303_ARATH	1.3e-28	75.00	60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1	[more]

BLAST of Lsi09G009540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ98_CUCSA	7.9e-30	94.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409620 PE=4 SV=1	[more]
A0A067LPS0_JATCU	6.7e-29	81.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24109 PE=3 SV=1	[more]
A0A067ESL9_CITSI	1.1e-28	84.00	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047379mg PE=3 S...	[more]
V4S5A9_9ROSI	1.1e-28	84.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006263mg PE=3 SV=1	[more]
A0A072TK88_MEDTR	1.5e-28	78.95	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein OS=Medicago truncatula GN...	[more]

BLAST of Lsi09G009540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77940.1	1.4e-30	76.32	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G36240.1	3.2e-30	76.32	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	7.1e-30	75.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of Lsi09G009540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121096\|ref\|XP_008460497.1\|	5.1e-30	88.16	PREDICTED: 60S ribosomal protein L30-like [Cucumis melo]	[more]
gi\|449445100\|ref\|XP_004140311.1\|	1.1e-29	94.29	PREDICTED: 60S ribosomal protein L30 [Cucumis sativus]	[more]
gi\|802537338\|ref\|XP_012064688.1\|	9.6e-29	81.58	PREDICTED: 60S ribosomal protein L30-like [Jatropha curcas]	[more]
gi\|567855309\|ref\|XP_006420774.1\|	1.6e-28	84.00	hypothetical protein CICLE_v10006263mg [Citrus clementina]	[more]
gi\|1009140443\|ref\|XP_015887655.1\|	1.6e-28	82.67	PREDICTED: 60S ribosomal protein L30 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR022991	Ribosomal_L30e_CS
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR000231	Ribosomal_L30e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G009540.1	Lsi09G009540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000231	Ribosomal protein L30e	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 20..89 score: 6.3
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 14..82 score: 2.7
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 57..77 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G009540	Csa5G409620	Cucumber (Chinese Long) v2	culsiB330
Lsi09G009540	CSPI05G14680	Wild cucumber (PI 183967)	cpilsiB330
Lsi09G009540	Cucsa.034600	Cucumber (Gy14) v1	cgylsiB008
Lsi09G009540	CmaCh15G007280	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G009540	CmoCh04G024160	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G009540	Cla019785	Watermelon (97103) v1	lsiwmB009
Lsi09G009540	MELO3C022815	Melon (DHL92) v3.5.1	lsimeB014
Lsi09G009540	ClCG03G008920	Watermelon (Charleston Gray)	lsiwcgB014
Lsi09G009540	MELO3C022815.2	Melon (DHL92) v3.6.1	lsimedB015
Lsi09G009540	Cla97C03G060110	Watermelon (97103) v2	lsiwmbB013
Lsi09G009540	Bhi12G001097	Wax gourd	lsiwgoB009
Lsi09G009540	Cp4.1LG01g20120	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G009540	Cp4.1LG13g05020	Cucurbita pepo (Zucchini)	cpelsiB130
Lsi09G009540	CsGy5G014600	Cucumber (Gy14) v2	cgyblsiB302
Lsi09G009540	Carg18251	Silver-seed gourd	carlsiB480
Lsi09G009540	Carg01480	Silver-seed gourd	carlsiB754
Lsi09G009540	CsaV3_5G023800	Cucumber (Chinese Long) v3	cuclsiB353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G009540	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G009540	Cucurbita moschata (Rifu)	cmolsiB256