CmoCh04G024160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G024160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L30, putative
Location	Cmo_Chr04 : 17965282 .. 17967312 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACAATTGAGTCTTCTCTTTGCAGTCGCGCCACTCCTTGTCGTGGAAAAGCTTCAGAACAGGGTAAGGGATGATTCAAATTGTGATTCGAAGGTCTTGATTGTTTTCATCTCTGATTCTTTCTGTTTCTTCTTTTCTTTAAGAATTTTGTACACGAGAAGCGACAATGGCGCCGGCGAAGAAGACTGTAAGTATTACTTGAACTGTCCGTGAATGCTGCTCCTCCAATTAATTTAGGGATAATAGTTTTGATGATCTGTGGTATTGCAATTGCAGAAGAAGACTCATGAGAGTATTAACAACAGGCTTGCCCTTGTGATGAAGAGCGGCAAGTACACGCTGGGGTACAAAACCGTCCTTCGCACTATCCGCAGCTCCAAAGGTCTTCATACGTCGTTCTTCTTTTCTGATAGTTCTTATTGTTATTACCATTTGGTGTTTGATTCAAATTTAGGTTTCATTTGTGTACTTCTGACACATTTCTGGTTTTCGATCTGTGATAATACAGGGAAGCTTATTATTCTATCGAACAACTGCCCGCCCCTGCGTAAATCCGAGATTGAGTACTACGCAATGCTTGCTAAAGTTGGGGTTCACCACTACAACGGAAGTAAGTGTAGTGCAGACTCTGCTTTGTTAGTTTTTTGTTTATATGTTCAAGTTGTAAGCAGCGTTTTCTGACTTTGATTTTTAGTGCCTCGTATGCCGGATTTCAGATATATGGGATATAATTTATCTCTTTTCTTGTTCTGTCATGTCTTCATTATCTTAGAAAAAGAACAGTAATCAGTAAACTTAGCACTATTAATTCCGTATTAAAGGTATCTTGAGTAAGTTGATCAATTAGAGAGGTGCTTACCTGCCGTGGGCTTAAAAACTCTTGTTCTAACTAGCTCTAAGAGTGCTTATGATGGCATTTTTAAGACCAAAATGAATGACATTAAGCGTTTAATTCATCCTAACTAGAATCTATATTGAAGTATTTGTAACACAGGTGACGTTCTTATACTTTTCTTTTATTGATTTGCAACTAGTATCTTCTACGATATTTAGTATAAAGCTATATGGGTTGCTTCCATTGGTAGTAATTTGTTCTGACTCAAAAAATTGATCTAGGAGATGTAGTTTAAATTTTCATTTAATCTATATCCCATACATCTGTAATTCAAAATTTTCTGAGAAATTAAGGGGTGTATGCTCTACCTTACCTTGTATGCATGTTCATATGCGATTATTTGTGATTTTGTATGTTTTGTTTCTCCTGTCTTACATATTTTCTATATTTGGTTGCACTTTTAGGCAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTTCCGTGTATCCTGCCTCAGCATTATTGACCCAGGTACTAAATGTTTGTTATTTGTGATCTTGGAACTGCTTGTGGCATGTTGATCTTTCGATCATCTTGTTCTAATTCGTGATGTTTGCATAAAACATTTTATTTTAGCTTAAAAACTTGATATAGTCCTTTCCTTTTTCCATTTACTTTATGGGTTAATATTACTTCTACTTTCAAGTGAAGTTAAGAAATTAAAGCATAATATTTTCCAAGCTTGAACGAATATGAAACATCTATAACTCACCTGCTTTTGAATTCTTTTCTAGGTGATTCTGATATTATCAAATCGCTTCCCAGTGAGCAGTGATGATACCCATCATTCAGAACGATGTATTCAATGTGGTACCACCTTTTCTCTTCAGTAAACGGTAGAATTGCATCTTTTTCAATGTCCTTAGAATAGCCCTTCTTAATTTCTGCACTTTAATCTTTTACATTGATGGCCAGATTTTGTCATTGACTTCGAGGTTTTGTTTAATTGACATGGTTGAGTAGAATGTTCAATTAGTTTTTATCTATTTATTCCCAGACAATTATTTACTCCAAATCTCCTTGCCTTTTGCATTAACAATGAAACACCCTATTTATTTACAGGATTACCTAGTTGAAAACATGAATATTTTTTTGGTTTTCATTTTTGTTTTGCAAACTTTATTCAACTATTCC

mRNA sequence

TAACAATTGAGTCTTCTCTTTGCAGTCGCGCCACTCCTTGTCGTGGAAAAGCTTCAGAACAGGAATTTTGTACACGAGAAGCGACAATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGTATTAACAACAGGCTTGCCCTTGTGATGAAGAGCGGCAAGTACACGCTGGGGTACAAAACCGTCCTTCGCACTATCCGCAGCTCCAAAGGGAAGCTTATTATTCTATCGAACAACTGCCCGCCCCTGCGTAAATCCGAGATTGAGTACTACGCAATGCTTGCTAAAGTTGGGGTTCACCACTACAACGGAAGCAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTTCCGTGTATCCTGCCTCAGCATTATTGACCCAGGTGATTCTGATATTATCAAATCGCTTCCCAGTGAGCAGTGATGATACCCATCATTCAGAACGATGTATTCAATGTGGTACCACCTTTTCTCTTCAGTAAACGGTAGAATTGCATCTTTTTCAATGTCCTTAGAATAGCCCTTCTTAATTTCTGCACTTTAATCTTTTACATTGATGGCCAGATTTTGTCATTGACTTCGAGGTTTTGTTTAATTGACATGGTTGAGTAGAATGTTCAATTAGTTTTTATCTATTTATTCCCAGACAATTATTTACTCCAAATCTCCTTGCCTTTTGCATTAACAATGAAACACCCTATTTATTTACAGGATTACCTAGTTGAAAACATGAATATTTTTTTGGTTTTCATTTTTGTTTTGCAAACTTTATTCAACTATTCC

Coding sequence (CDS)

ATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGTATTAACAACAGGCTTGCCCTTGTGATGAAGAGCGGCAAGTACACGCTGGGGTACAAAACCGTCCTTCGCACTATCCGCAGCTCCAAAGGGAAGCTTATTATTCTATCGAACAACTGCCCGCCCCTGCGTAAATCCGAGATTGAGTACTACGCAATGCTTGCTAAAGTTGGGGTTCACCACTACAACGGAAGCAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTTCCGTGTATCCTGCCTCAGCATTATTGACCCAGGTGATTCTGATATTATCAAATCGCTTCCCAGTGAGCAGTGA

Homology

[Close]

BLAST of CmoCh04G024160 vs. Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-53
Identity = 98/112 (87.50%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK+LP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-50
Identity = 94/112 (83.93%), Postives = 107/112 (95.54%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAKVGVHHYN +NVDLGTACGKYFRVSCLSI+DPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-50
Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRV CLSIID GDSDIIKS+P +
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]

BLAST of CmoCh04G024160 vs. Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.3e-50
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIKS+P +Q
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-49
Identity = 91/112 (81.25%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAKVGVH YNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIK+LP +Q
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. TrEMBL
Match: A0A0A0KQ98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409620 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.8e-55
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. TrEMBL
Match: A0A022QQS0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016672mg PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.4e-53
Identity = 102/112 (91.07%), Postives = 110/112 (98.21%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGK+TLGYKTVL+T+RSSKGKLI++SNNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKGKLILISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAML+KVGVHHYNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIKSLPSEQ
Sbjct: 61  EYYAMLSKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPSEQ 112

[Close]

BLAST of CmoCh04G024160 vs. TrEMBL
Match: V4S1Y4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026806mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGKYTLGYKTVLR++RSSKGKLI+LSNNCPPLRKSEI
Sbjct: 1   MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP E
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111

[Close]

BLAST of CmoCh04G024160 vs. TrEMBL
Match: A0A067DL88_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033750mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGKYTLGYKTVLR++RSSKGKLI+LSNNCPPLRKSEI
Sbjct: 1   MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP E
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111

[Close]

BLAST of CmoCh04G024160 vs. TrEMBL
Match: V4S5A9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006263mg PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.2e-52
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGKYTLGYKTVLR++R+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP +
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 111

[Close]

BLAST of CmoCh04G024160 vs. TAIR10
Match: AT1G36240.1 (AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 200.3 bits (508), Expect = 6.3e-52
Identity = 94/112 (83.93%), Postives = 107/112 (95.54%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAKVGVHHYN +NVDLGTACGKYFRVSCLSI+DPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. TAIR10
Match: AT1G77940.1 (AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-51
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIKS+P +Q
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. TAIR10
Match: AT3G18740.1 (AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-50
Identity = 91/112 (81.25%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAKVGVH YNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIK+LP +Q
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. NCBI nr
Match: gi|659121096|ref|XP_008460497.1| (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-55
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. NCBI nr
Match: gi|449445100|ref|XP_004140311.1| (PREDICTED: 60S ribosomal protein L30 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.8e-55
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmoCh04G024160 vs. NCBI nr
Match: gi|848890410|ref|XP_012845343.1| (PREDICTED: 60S ribosomal protein L30 [Erythranthe guttata])

HSP 1 Score: 214.5 bits (545), Expect = 9.2e-53
Identity = 102/112 (91.07%), Postives = 110/112 (98.21%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGK+TLGYKTVL+T+RSSKGKLI++SNNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKGKLILISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 113
           EYYAML+KVGVHHYNG+NVDLGTACGKYFRVSCLSI+DPGDSDIIKSLPSEQ
Sbjct: 61  EYYAMLSKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPSEQ 112

[Close]

BLAST of CmoCh04G024160 vs. NCBI nr
Match: gi|567871001|ref|XP_006428122.1| (hypothetical protein CICLE_v10026806mg [Citrus clementina])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGKYTLGYKTVLR++RSSKGKLI+LSNNCPPLRKSEI
Sbjct: 1   MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP E
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111

[Close]

BLAST of CmoCh04G024160 vs. NCBI nr
Match: gi|641839231|gb|KDO58164.1| (hypothetical protein CISIN_1g047379mg, partial [Citrus sinensis])

HSP 1 Score: 211.8 bits (538), Expect = 6.0e-52
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGKYTLGYKTVLR++R+SKGKLIILSNNCPPLRKSEI
Sbjct: 43  MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEI 102

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP +
Sbjct: 103 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 153

The following BLAST results are available for this feature:

BLAST of CmoCh04G024160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL30_LUPLU	4.1e-53	87.50	60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1	[more]
RL301_ARATH	1.1e-50	83.93	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1	[more]
RL30_EUPES	1.5e-50	85.59	60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1	[more]
RL302_ARATH	3.3e-50	82.14	60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1	[more]
RL303_ARATH	3.6e-49	81.25	60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1	[more]

BLAST of CmoCh04G024160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ98_CUCSA	6.8e-55	95.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409620 PE=4 SV=1	[more]
A0A022QQS0_ERYGU	6.4e-53	91.07	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016672mg PE=3 SV=1	[more]
V4S1Y4_9ROSI	1.4e-52	92.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026806mg PE=4 SV=1	[more]
A0A067DL88_CITSI	1.4e-52	92.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033750mg PE=4 SV=1	[more]
V4S5A9_9ROSI	4.2e-52	91.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006263mg PE=3 SV=1	[more]

BLAST of CmoCh04G024160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36240.1	6.3e-52	83.93	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G77940.1	1.8e-51	82.14	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	2.0e-50	81.25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of CmoCh04G024160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121096\|ref\|XP_008460497.1\|	3.4e-55	96.43	PREDICTED: 60S ribosomal protein L30-like [Cucumis melo]	[more]
gi\|449445100\|ref\|XP_004140311.1\|	9.8e-55	95.54	PREDICTED: 60S ribosomal protein L30 [Cucumis sativus]	[more]
gi\|848890410\|ref\|XP_012845343.1\|	9.2e-53	91.07	PREDICTED: 60S ribosomal protein L30 [Erythranthe guttata]	[more]
gi\|567871001\|ref\|XP_006428122.1\|	2.0e-52	92.79	hypothetical protein CICLE_v10026806mg [Citrus clementina]	[more]
gi\|641839231\|gb\|KDO58164.1\|	6.0e-52	91.89	hypothetical protein CISIN_1g047379mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000231	Ribosomal_L30e
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR022991	Ribosomal_L30e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024160.1	CmoCh04G024160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000231	Ribosomal protein L30e	HAMAP	MF_00481	Ribosomal_L30e	coord: 12..109 score: 21
IPR000231	Ribosomal protein L30e	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 2..112 score: 1.7
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 13..105 score: 1.4
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00709	RIBOSOMAL_L30E_1	coord: 24..48 scor
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 80..100 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G024160	Cucsa.034600	Cucumber (Gy14) v1	cgycmoB0019
CmoCh04G024160	CmaCh15G007280	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G024160	Cla019785	Watermelon (97103) v1	cmowmB667
CmoCh04G024160	Csa5G409620	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G024160	MELO3C022815	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G024160	ClCG03G008920	Watermelon (Charleston Gray)	cmowcgB647
CmoCh04G024160	CSPI05G14680	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G024160	Lsi09G009540	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G024160	Cp4.1LG13g05020	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G024160	Cp4.1LG01g20120	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G024160	MELO3C022815.2	Melon (DHL92) v3.6.1	cmomedB715
CmoCh04G024160	CsaV3_5G023800	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G024160	Cla97C03G060110	Watermelon (97103) v2	cmowmbB719
CmoCh04G024160	Bhi12G001097	Wax gourd	cmowgoB0822
CmoCh04G024160	CsGy5G014600	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G024160	Carg01480	Silver-seed gourd	carcmoB1121
CmoCh04G024160	Carg18251	Silver-seed gourd	carcmoB0716

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G024160	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G024160	Cucurbita maxima (Rimu)	cmacmoB729