CmaCh15G007280 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G007280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L30, putative
Location	Cma_Chr15 : 3529914 .. 3532481 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCCCGCCACTCCCTGCCGTGTAAAAGCCTCGTTAGGGTAGGGCAGGTATGCTCCAAACCCTAATTTGACATAACATCTGACGACTTCGATTGTTTTCATTTCTGATTCTTTCTGTTTCATCTTCCCTTTTAAGTATTCTGTACACCTTTTGAGAAGCGACAATGGCGCCGGCGAAGAAGACTGTAAGTGTTACTCTAACGCTGCATAAATGTTGCATTTCCAATTACTTCAGTGATAATGGTTTCGATGATCTGTTGTGTTGTAATTGCAGAAGAAGACTCATGAGAGCATAAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTTGGATACAAAACCGTTCTTCGCACTATCCGCAGCTCCAAAGGTCTTCGTCCGTCGTTTTCCATTTCCAAGAAACCTTGTTTATCTGAATTATATTTTATTTCTGTATATATATATATATATATATATTTTTGACACTTTTCTGTTTTTCGACATGTGAAAATTCAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAAGTATAGTAGAGCTTAAGCAGGGTTTTTCTGCTTTATTGTATTTTGAAGCTTCATATGCATGATTTCAGATGTATTGGATAGAATTGCTCTCATTGCTTGTATTGCGTTTCGTTTTTCACTTTTGTAGTATATGAAATAACAGACTGTGTTCATCTCAACTCTGTATTGGAGGTTGATTATTGTATATCTGGACAAGAACTTGCTGTGTTTGTAAATGTTGTTTGATAGTATATTTGAGTAACTTGATCGATTACGTAATGGGTGGGTGCTCATAATGGGTTTCCCATGACCGGGATAAACGAATTTGATATTCAATGTGTAGTTCGTCCTTGCTAGTTTCATACATTCTTATTGATTTGCTACCATTGTCTTCTACAGTTGTTTTCACCTTTGGTATATAGCTTATTGAATAAAATAGGTGGGTTGCTTCCATTGGTAGTAATTGGTTCTTCTGACTCATAATATGGATGTGTCAAAGCACAAAACTCACCTCAAGGCTCGGGTTGATCGCCTCTAAGTGATAGGTGATGCCTGAGTGAAGTGAGGTGCAATGAGTAAATAAATAAATAAATAGTATGGAGATCATAAATTTATATAAATATAGTCATGAAATGTCAAAGCTTTAAAAACTAATACTGTAAAAATATCCAAATGTCAAAATTATCCAATAATAATCAAGTGATGAGTAAGTTTGATTTTTCCTATTTTTTTGGGCCTTTTATCGTGGGCTCTTATACTTAGTTCCATTGGTTATAATGCTAAGAAAGAAAAGGAAATAGCGTTAATTGAATCATGTGCGCGCCTTCAACCATGGGGAAGGTGACGCTGGGCAACCACAAGTTTAGTGTGGGGAGTGCTGGATTGAAGTCGTTTGCCCCAGCTGCTTACAAGGCCCAACGGCCTCAGGTTGCCTTGCCCTTAACCATAGGCGAGCACCTGGTTTGCCTCAAGAACACTAGTTTTTCCATCCATTTTGTCTATCTTTTGTTTGACATATTGTCAATTAATTAGTGCTAGTATGCTCGTTCAGTCTGCTTTACCTTCTATGTATTTTTATGTACGTTTTTAGTATTTTTTTTTTCTTCTGTCTTATTTGTTATTTTTGTTATTTGGGTGTACATTTAGGTAACGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGCGTCTCCTGCCTCAGCATCATTGACCCAGGTACTACAAATTTTATTATTTGGTTTATCGAATTTCATTTTTATGTTGTTATGACGGTCTCTAATTTTCAGTTCTTGAAGTTTGTATGAACTTTTAAACAAAAACTTGATAGGATGGCAGTTAGGTGTCCGGTCTTTAACTTGATACAAATTTTATTATGTGTGTGAATATTTCTGCGGACAAATGTTTGAGAGAACACATGCAGTTTGGTGTTGAGTTTTGAAATATATTAAATTTTTTTGTTATATGATTAATAAAAAAAAAAAAACTAGCTTTTATGGTCGAAGTTCAGAATGCTACACTTCGGAAGTTGGCACTAAATCAAAACATTTGTAAGTATAGATATAAAAGAGAAATAAGTAAAACTTTCAAGCTGCCTAATACTTGTTTTTTAATGATGGGTTTTACCAATTCTCCTGCTGCTATATTCTTTTCCAGGTGATTCGGATATTATCAAATCACTTCCAGGTGATCAGTGATTATTGTACCCCGTAGAACTTAGTTTCTTTTTTTTTTCTTTTTTTCTTATTTTTTGTCACACCTTTTCTCTTCAGCAAATGCTAGAATTTTGCATCGATTATAATGTCCTCAGAATAGCTTCCTACTTTCTGCATTAAAAAAATTTATGTTGATAACTTGATTTTGTCAATGTCCTTGAGGTTCTATTACTATATCTAAACAATTATGAATTCAGAATGTCTTTGCCTTCTGTATTAGCAAGGCATTTACGTGGAGTTAGAATCAAACATTTGATCAACTGCCTC

mRNA sequence

AGTCCCGCCACTCCCTGCCGTGTAAAAGCCTCGTTAGGGTAGGGCAGTATTCTGTACACCTTTTGAGAAGCGACAATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATAAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTTGGATACAAAACCGTTCTTCGCACTATCCGCAGCTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAACGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGCGTCTCCTGCCTCAGCATCATTGACCCAGGTGATTCGGATATTATCAAATCACTTCCAGGTGATCAGTGATTATTGTACCCCGTAGAACTTAGTTTCTTTTTTTTTTCTTTTTTTCTTATTTTTTGTCACACCTTTTCTCTTCAGCAAATGCTAGAATTTTGCATCGATTATAATGTCCTCAGAATAGCTTCCTACTTTCTGCATTAAAAAAATTTATGTTGATAACTTGATTTTGTCAATGTCCTTGAGGTTCTATTACTATATCTAAACAATTATGAATTCAGAATGTCTTTGCCTTCTGTATTAGCAAGGCATTTACGTGGAGTTAGAATCAAACATTTGATCAACTGCCTC

Coding sequence (CDS)

ATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATAAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTTGGATACAAAACCGTTCTTCGCACTATCCGCAGCTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAGTACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAACGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGCGTCTCCTGCCTCAGCATCATTGACCCAGGTGATTCGGATATTATCAAATCACTTCCAGGTGATCAGTGA

Protein sequence

MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ

Homology

[Close]

BLAST of CmaCh15G007280 vs. Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 9.8e-55
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-51
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-51
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RV CLSIID GDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]

BLAST of CmaCh15G007280 vs. Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.0e-51
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.6e-50
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. TrEMBL
Match: A0A0A0KQ98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409620 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.6e-57
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. TrEMBL
Match: M1BM03_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018701 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.9e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+T+R+SKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSIIDPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. TrEMBL
Match: K4DAK6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.9e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+T+R+SKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSIIDPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. TrEMBL
Match: A0A0V0GYL7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.9e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+T+R+SKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSIIDPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. TrEMBL
Match: V4S5A9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006263mg PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.4e-53
Identity = 102/111 (91.89%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGKYTLGYKTVLR++R+SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 111

[Close]

BLAST of CmaCh15G007280 vs. TAIR10
Match: AT1G36240.1 (AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 203.0 bits (515), Expect = 9.8e-53
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. TAIR10
Match: AT1G77940.1 (AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 201.4 bits (511), Expect = 2.8e-52
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. TAIR10
Match: AT3G18740.1 (AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.1e-51
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. NCBI nr
Match: gi|659121096|ref|XP_008460497.1| (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. NCBI nr
Match: gi|449445100|ref|XP_004140311.1| (PREDICTED: 60S ribosomal protein L30 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. NCBI nr
Match: gi|565346489|ref|XP_006340286.1| (PREDICTED: 60S ribosomal protein L30 [Solanum tuberosum])

HSP 1 Score: 214.9 bits (546), Expect = 7.0e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+T+R+SKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSIIDPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. NCBI nr
Match: gi|460411609|ref|XP_004251199.1| (PREDICTED: 60S ribosomal protein L30 [Solanum lycopersicum])

HSP 1 Score: 214.9 bits (546), Expect = 7.0e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+T+R+SKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSIIDPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGDQ 112

[Close]

BLAST of CmaCh15G007280 vs. NCBI nr
Match: gi|156530455|gb|ABU75308.1| (ribosomal protein L30e [Pisum sativum])

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKSIPGDQ 112

The following BLAST results are available for this feature:

BLAST of CmaCh15G007280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL30_LUPLU	9.8e-55	89.29	60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1	[more]
RL301_ARATH	1.7e-51	83.93	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1	[more]
RL30_EUPES	3.0e-51	85.59	60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1	[more]
RL302_ARATH	5.0e-51	82.14	60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1	[more]
RL303_ARATH	5.6e-50	81.25	60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1	[more]

BLAST of CmaCh15G007280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ98_CUCSA	9.6e-57	99.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409620 PE=4 SV=1	[more]
M1BM03_SOLTU	4.9e-53	90.18	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018701 PE=3 SV=1	[more]
K4DAK6_SOLLC	4.9e-53	90.18	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A0V0GYL7_SOLCH	4.9e-53	90.18	Putative ovule protein OS=Solanum chacoense PE=3 SV=1	[more]
V4S5A9_9ROSI	8.4e-53	91.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006263mg PE=3 SV=1	[more]

BLAST of CmaCh15G007280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36240.1	9.8e-53	83.93	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G77940.1	2.8e-52	82.14	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	3.1e-51	81.25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of CmaCh15G007280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121096\|ref\|XP_008460497.1\|	4.7e-57	100.00	PREDICTED: 60S ribosomal protein L30-like [Cucumis melo]	[more]
gi\|449445100\|ref\|XP_004140311.1\|	1.4e-56	99.11	PREDICTED: 60S ribosomal protein L30 [Cucumis sativus]	[more]
gi\|565346489\|ref\|XP_006340286.1\|	7.0e-53	90.18	PREDICTED: 60S ribosomal protein L30 [Solanum tuberosum]	[more]
gi\|460411609\|ref\|XP_004251199.1\|	7.0e-53	90.18	PREDICTED: 60S ribosomal protein L30 [Solanum lycopersicum]	[more]
gi\|156530455\|gb\|ABU75308.1\|	1.2e-52	89.29	ribosomal protein L30e [Pisum sativum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000231	Ribosomal_L30e
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR022991	Ribosomal_L30e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G007280.1	CmaCh15G007280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000231	Ribosomal protein L30e	HAMAP	MF_00481	Ribosomal_L30e	coord: 12..109 score: 21
IPR000231	Ribosomal protein L30e	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 2..112 score: 2.1
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 13..105 score: 3.2
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00709	RIBOSOMAL_L30E_1	coord: 24..48 scor
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 80..100 scor
None	No IPR available	PANTHER	PTHR11449:SF2	SUBFAMILY NOT NAMED	coord: 2..112 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G007280	Cucsa.034600	Cucumber (Gy14) v1	cgycmaB0019
CmaCh15G007280	Cla019785	Watermelon (97103) v1	cmawmB264
CmaCh15G007280	Csa5G409620	Cucumber (Chinese Long) v2	cmacuB293
CmaCh15G007280	MELO3C022815	Melon (DHL92) v3.5.1	cmameB252
CmaCh15G007280	ClCG03G008920	Watermelon (Charleston Gray)	cmawcgB261
CmaCh15G007280	CSPI05G14680	Wild cucumber (PI 183967)	cmacpiB297
CmaCh15G007280	CmoCh04G024160	Cucurbita moschata (Rifu)	cmacmoB309
CmaCh15G007280	CmoCh15G007510	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G007280	Lsi09G009540	Bottle gourd (USVL1VR-Ls)	cmalsiB268
CmaCh15G007280	Cp4.1LG13g05020	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G007280	Cp4.1LG01g20120	Cucurbita pepo (Zucchini)	cmacpeB318
CmaCh15G007280	MELO3C022815.2	Melon (DHL92) v3.6.1	cmamedB287
CmaCh15G007280	CsaV3_5G023800	Cucumber (Chinese Long) v3	cmacucB0343
CmaCh15G007280	Cla97C03G060110	Watermelon (97103) v2	cmawmbB300
CmaCh15G007280	Bhi12G001097	Wax gourd	cmawgoB0373
CmaCh15G007280	CsGy5G014600	Cucumber (Gy14) v2	cgybcmaB600
CmaCh15G007280	Carg01480	Silver-seed gourd	carcmaB1148
CmaCh15G007280	Carg18251	Silver-seed gourd	carcmaB0737

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G007280	CmaCh04G023120	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:

None