Carg01480 (gene) Silver-seed gourd

Overview
NameCarg01480
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L30-like
LocationCucurbita_argyrosperma_scaffold_004 : 1193357 .. 1195792 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTGACACAAATTATTATTATTTCTTTTTTTCATAACATCCGACGACTTCGATTGTTTTCATTTCTGATTCTTTCTGTTTCATCTTCTCTTTAAGGATTTTGTTCACCTTTTGAGAAGCGACAATGGCGCCGGCGAAGAAGACTGTAAGTGTTACTCTGACGGTGCATAAATATTGCATTTCCAATTACTTCAGTGATAATGGTTTTGATGATCTGTGGTGTTGTAATTGCAGAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTGGGGTACAAAACCGTTCTTCGCACTATCCGCAGCTCCAAAGGTCTTCGTCCGTCGTTTTCCCTTTCCAAGAAACCTTGTTTATTCGAATTTATATTTTATTTCCGTTTTTCTTTTTTTTTTGACATTTTTCTGTTTTTCGATCTGTTTACAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAATACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAAGTATAGTAGAGCTTAAGCAGGATTTTTCTGCTTTATTGTATTTGGAGCTTCATATGCATGATTTCCGATATATGGGATAGAATTGCGCTCATTGCTTGTATTGCGTTTCGTTTTTTACTTTTGTAGTATAAGAAATGACAGGCTGTCTTCATCTCAACTCCGTATTGGAGGTTGATTATTGTATATCTGGACAAGGACTTGCTGTGTTTGTAAATGTTGTTTGATTGTATATTTGAGTAACTCGATCGATTACGTAATGGGTGGGTGCTCATAATGGGTTTCCATGTTCGGGATAAACGAATTTGATATTCAATGTGTAGTTCGTCCTTGCTAGTTTCATACATTCTTATTGATTTGCTACCATTGTCTTCTACAGTTGTTTTCACCTTTGGTATATAGTTATTGAATAAAATAGGTGGGTTGCTTCCATTGGCAGTAATTGGTTCTTCTGACTCATAATATGGATGTGTCAATGCACAAAACTCACCTCAAGGCTCGGGTTGATCGCCTCAAAGTTATAGGTGATGCCTGAGTGAAGTGAGGTGCAATGAGTAAATAAATAAATAAATAGTATGGAGATCATAAATTTATATAAATATAGTCATGAAATGTCAAAGCTTTAAAAATTAATACTAAATTGTAAAAATATCCAAATGTCAAAATTATCCAATAATAATCAAGTGATGAGTAAGATTGATTTTTCCTATTTTGTTGGGCCTTTTATCGTGGGCTCTTATACTTAGTTCCATTGGTTATAATGCTAAGAAAGAAAAGGAAATAGCGTTAATTGAATCATGTGCGCGCCTTCAACCACGGGGAAGGTGACGCAGGGCAACCACAAGTTTAGTGGGGGGAGTGCTGGATTGAAGTCGCTTGCCCCAGCTGCTTACAAGGCCCAACGGCTTCAGGTTGCCTTGCCCTTAACCATAGGCGAGCACCTGGTTTGCCTCAACAACACTAGTTTTTCCATCCCTTTTGTCCATCTTGTTTGAAGAATTGTCAATTAATTAGTGTTAGTATGCTCGTTCAGTCTGCTTTTACCTTCTATGTATTTTTATGTACGTTTTTAGTATTTTTTTTGTTTCTTCTGTCTTATTTATTTTTGTTATTTGGGTGTATATTTAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGCGTTTCCTGCCTCAGCATCATTGACCCAGGTACTACAAATTTTATTATTTGGTTTATCGAATTTCATTTTTATGTTGTTAGGACGGTCTCTAATTTTCAGTTCTTGAAGTTTGTATAAACTCTTAAACAAAAACTTGATAGGATCGCAGTTAGGTGTCCGGTTTTTAACTTGATACAAATTTTATTATGTGTGTGAATATTTCTGCGGACAAAGGTTTGAGAGAACACATGCAGTTTGGTGTTGAGTTTTGAAATATATTAAACTTTTTTGTTATATGATTAATAAGAAAACTAGCTTTTATGGTCGTAGTTCAGAATGCTACACTTAGAAATTTGGCACTAAATCAAAACATTTGTAAGTATAGATATAAAAGAGAATGATGTAAAACTTTCAGCTGCCTAATACTTGTTTTTCAATGATGGGTTTTATTACCTATTCTCCTGCTGCTCTATTCTTTTCCAGGTGATTCGGATATTATCAAATCGCTTCCAGGTGATCAGTGATTATTGTACCCTGTAGAACTTAGTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTGTTGCACATTTTCTCTTCAGCTAATGCTAGAATTTTGCATCGATTATTATGTCCTCAGAATAGCTTCCTACTTTCTGCATTAAAAAAATTTATGTTGATAACTTGATTTTGTCAATGTCCTTGAGGTTTTGTTT

mRNA sequence

TAATTTGACACAAATTATTATTATTTCTTTTTTTCATAACATCCGACGACTTCGATTGTTTTCATTTCTGATTCTTTCTGTTTCATCTTCTCTTTAAGGATTTTGTTCACCTTTTGAGAAGCGACAATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTGGGGTACAAAACCGTTCTTCGCACTATCCGCAGCTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAATACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGCGTTTCCTGCCTCAGCATCATTGACCCAGGTGATTCGGATATTATCAAATCGCTTCCAGGTGATCAGTGATTATTGTACCCTGTAGAACTTAGTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTGTTGCACATTTTCTCTTCAGCTAATGCTAGAATTTTGCATCGATTATTATGTCCTCAGAATAGCTTCCTACTTTCTGCATTAAAAAAATTTATGTTGATAACTTGATTTTGTCAATGTCCTTGAGGTTTTGTTT

Coding sequence (CDS)

ATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTTGTGATGAAGAGCGGCAAGTACACACTGGGGTACAAAACCGTTCTTCGCACTATCCGCAGCTCCAAAGGAAAGCTTATTATTCTATCGAACAACTGCCCGCCTCTGCGTAAATCCGAAATTGAATACTACGCAATGCTTGCCAAAATTGGGGTTCACCACTATAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGCGTTTCCTGCCTCAGCATCATTGACCCAGGTGATTCGGATATTATCAAATCGCTTCCAGGTGATCAGTGA

Protein sequence

MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Homology
[Close]
BLAST of Carg01480 vs. NCBI nr
Match: XP_008460497.1 (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S ribosomal protein L30-like [Cucurbita moschata] >XP_022992865.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023549693.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_023549694.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 9.2e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Carg01480 vs. NCBI nr
Match: XP_004140311.1 (PREDICTED: 60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa_5G409620 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 2.7e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Carg01480 vs. NCBI nr
Match: XP_022141723.1 (60S ribosomal protein L30-like [Momordica charantia])

HSP 1 Score: 223.8 bits (569), Expect = 2.9e-55
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MA AKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Carg01480 vs. NCBI nr
Match: XP_022952815.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 5.0e-55
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 112

[Close]
BLAST of Carg01480 vs. NCBI nr
Match: XP_022990953.1 (60S ribosomal protein L30-like [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 8.6e-55
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTV+RTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVIRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 112

[Close]
BLAST of Carg01480 vs. TAIR10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 203.0 bits (515), Expect = 9.8e-53
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Carg01480 vs. TAIR10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 201.4 bits (511), Expect = 2.8e-52
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]
BLAST of Carg01480 vs. TAIR10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.1e-51
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]
BLAST of Carg01480 vs. Swiss-Prot
Match: sp|O49884|RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-54
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112

[Close]
BLAST of Carg01480 vs. Swiss-Prot
Match: sp|Q9C8F7|RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-51
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Carg01480 vs. Swiss-Prot
Match: sp|Q9M5M6|RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-51
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RV CLSIID GDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]
BLAST of Carg01480 vs. Swiss-Prot
Match: sp|Q8VZ19|RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.1e-51
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

[Close]
BLAST of Carg01480 vs. Swiss-Prot
Match: sp|Q9LSA3|RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.7e-50
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

[Close]
BLAST of Carg01480 vs. TrEMBL
Match: tr|A0A1S3CCQ4|A0A1S3CCQ4_CUCME (60S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.1e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Carg01480 vs. TrEMBL
Match: tr|A0A0A0KQ98|A0A0A0KQ98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G409620 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.8e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

[Close]
BLAST of Carg01480 vs. TrEMBL
Match: tr|A0A2I4H0H3|A0A2I4H0H3_9ROSI (60S ribosomal protein L30-like OS=Juglans regia OX=51240 GN=LOC109012456 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.1e-53
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVLR++RSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAKIGVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGD
Sbjct: 61  EYYAMLAKIGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111

[Close]
BLAST of Carg01480 vs. TrEMBL
Match: tr|A0A2R6QYG1|A0A2R6QYG1_ACTCH (60S ribosomal protein L30 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12201 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.3e-53
Identity = 102/112 (91.07%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKKTHESINNRLALV+KSGKYTLGYKTVL+T+RSSKGKLII+SNNCPPLRKSEI
Sbjct: 1   MVSVKKTKKTHESINNRLALVVKSGKYTLGYKTVLKTLRSSKGKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRVSCLSIIDPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVSCLSIIDPGDSDIIKTLPGDQ 112

[Close]
BLAST of Carg01480 vs. TrEMBL
Match: tr|A0A2R6RNR4|A0A2R6RNR4_ACTCH (60S ribosomal protein L30 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04936 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.3e-53
Identity = 101/112 (90.18%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MA  KKTKKTHESINNRLALV+KSGKYTLGYKTVL+T+RSSKGKL+I+SNNCPPLRKSEI
Sbjct: 1   MAAGKKTKKTHESINNRLALVVKSGKYTLGYKTVLKTLRSSKGKLVIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAML+K+GVHHYNG+NVDLGTACGKYYRVSCLSIIDPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLSKVGVHHYNGNNVDLGTACGKYYRVSCLSIIDPGDSDIIKTLPGDQ 112

The following BLAST results are available for this feature:
BLAST of Carg01480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460497.19.2e-57100.00PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S rib... [more]
XP_004140311.12.7e-5699.11PREDICTED: 60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical ... [more]
XP_022141723.12.9e-5597.3260S ribosomal protein L30-like [Momordica charantia][more]
XP_022952815.15.0e-5596.4360S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosoma... [more]
XP_022990953.18.6e-5595.5460S ribosomal protein L30-like [Cucurbita maxima][more]
BLAST of Carg01480 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G36240.19.8e-5383.93Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT1G77940.12.8e-5282.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT3G18740.13.1e-5181.25Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
BLAST of Carg01480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O49884|RL30_LUPLU1.0e-5489.2960S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
sp|Q9C8F7|RL301_ARATH1.8e-5183.93Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
sp|Q9M5M6|RL30_EUPES3.0e-5185.5960S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
sp|Q8VZ19|RL302_ARATH5.1e-5182.1460S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
sp|Q9LSA3|RL303_ARATH5.7e-5081.2560S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1[more]
BLAST of Carg01480 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CCQ4|A0A1S3CCQ4_CUCME6.1e-57100.0060S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1[more]
tr|A0A0A0KQ98|A0A0A0KQ98_CUCSA1.8e-5699.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G409620 PE=4 SV=1[more]
tr|A0A2I4H0H3|A0A2I4H0H3_9ROSI3.1e-5393.6960S ribosomal protein L30-like OS=Juglans regia OX=51240 GN=LOC109012456 PE=3 SV... [more]
tr|A0A2R6QYG1|A0A2R6QYG1_ACTCH5.3e-5391.0760S ribosomal protein L30 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE... [more]
tr|A0A2R6RNR4|A0A2R6RNR4_ACTCH5.3e-5390.1860S ribosomal protein L30 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR022991Ribosomal_L30e_CS
IPR000231Ribosomal_L30e
IPR039109L30/L30e/YlxQ
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01480-RACarg01480-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3DG3DSA:3.30.1330.30coord: 3..107
e-value: 3.6E-53
score: 179.7
IPR02906450S ribosomal protein L30e-likeSUPERFAMILYSSF55315L30e-likecoord: 13..106
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 3.3E-23
score: 81.1
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 3..112
IPR000231Ribosomal protein L30ePANTHERPTHR11449:SF9SUBFAMILY NOT NAMEDcoord: 3..112
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.273
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48