Lsi09G000370 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G000370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Polypyrimidine tract-binding-like protein, putative
Location	chr09 : 339344 .. 342698 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCAACAAAGCTCTTTCTCTCTCCTACTTCTCTCTCTCTCTAAACTCATACACAGAGATTCTCATTTCCAATTTTTCCCAAAAGCTGCAACAGATTTTCATCCTCCAAAATCTCCAATTCCCATTACCAAACCCAAAATCAAATCAAATCCCAGAATCAGAGAGGCCATGGTCAAGTTAGTTTCCGCTAGAGATTTCAGAGTGTACGGCCCTCGGCCAGTAAGAAACCGGTCGGAGTACATCAACGCCGGCCTCTACTTGTTCGCCACTGTCCTCCTTCTCGGTGGCTTTCTTGCTCAGCTTTCCCGACAACCCAAATCTGGTTTGGCCCTAATTCTGCTCGCCACTGCCCTAATTACGATCGTTAATTTGCACGATCTCTTCGCCCATCTTGCTGGAATAGATTTCCGGTTGCCGCTGCTTGTTCAGTACGATGCGCAGCTTCTTTTTGTGGAATTTTCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTCTTCTCTTTGGCTGCTCTGTTTCTTCTAATTCAGGTCCCCATTAATCGTTTGCTTGCTTCCTCTGATTAATTTAATTTTCTAGGTTAATAATATACCATTTTCGCTCTGGAATTCCATATTTGTTGAACTAACAAAATTGCACTTGTCGATCTTGATGAGAAATTGTTTGAGGGGCTGGACAATTGGTTCAATGAGATTTTCTGTGTGCTAGTTTAATTAGTCCTGTTCTCTTCTACTGTAAGTCTTGGATTTTAGAAATAGTTTTAGGGCATGAGTGAAAACCAACTCCCGGATTTTCTCTGTATCAGTGGTGATTCAACTATAGTAACTACTTTCTCTACCTATGATATAGTCAAAATCAGCAACCCTTTTAGAACTATTCACTTCTTTGGAGAGTTCAAGTTTCAGGGTCAATAAAGTCAATGTGATTGATTTTCCCTACCATTGGTTGTGATCATTTGGATCATTGAGTGACTGAGTGAGGTATGTAAGGCCCGTTGGTAACATTTCTGCTTTTCTTTTCTTCTATTAGAAAGCATGGTCATTGAGTAACTAGCTATCTTATCAAGAGTGTGGGGTCCTTTAATTTGACTTTTTTATATGAGATTCTCAACATACCCCTCAACCTTTTTGGGTTCACCATTCTCGATCGGATCTCAAATTCTTTTTTGCCTTTTGGGTTCATCATCCTCGATCGAATTTCAATTTCTTTTTATTGGATCGAATACCTGTTTGGGTTTATGAGTTTTGATATCATATATAACAGGGTTCCATCTCAAAACTAATTGGCAATGAGAGTTGTAATCCATCTATCGTGTAAGGCTCCTTAAATTTTTCCGATGTGGAATCCTCGACATCTTCCATTGTCTTTTCCAAGAAATAAAATCAAAACTGTGTTTAATTGTTTCTGTTTCTTATTGAACATTTGAGAGAACCGAAAAGCATAAAATGGGTGCTCTTAGAGTGAAAGATTATGTAGTCCTTTCAGGAATAGTTACCCAATCTTCAAATTTTCAATTATTATTTATTTTTTTAAAATACGTCATAATGGAAGATGCAGTCCTTTCAGCAATGTTTAGTTGTTCCCGTAGAACAGTGTCGTTGTAAGTACTTGACAATGTTTTGGGCTCACCTGACTTTGTTGCATGCTATCACTGGAGGCCTCGCTCCTCATACCAGGGACACAGAATACAAAACCCCATATCGAAGACCAAAAGCTATGGCGAAATCTAGAAAATGCTATCCTCTCGGTTTCAATGATTGCACATTGTAGGAAAACTATTTGATCAACTTCCTTCTGTTCTTAATGTTAAACTTTTTACAGCGTTCATGTTTGTTTTCCTCCTGTTGCACTTTACTAGAGCTGCCATTCAATTTACTGCTGCAGGAACAGAAGGGATATGATTATTACAAACTAGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGGGCCGATGGGCATGTTCAAATCTTGCAACAGAGCGTCCATGTTCCATTTTTAATTGGAAGCTTACTGTTCTTTGTTGCAGCAGTTCTCAATATCTATGAGCAGGCCGGGTTAGCCCATCACGGACTCAGACTTCTGGTAAGTGACATGAATATGTACATTTTACTCTCAATAGTTAACAATTGTGGCAGTGTTTATGTTGCATTATATTATTTCTTGCACATACTTTATAGCATTAATTCTAGGTTACATTTACATTGTTGCATTCCTATATCACAGCTTAATCTGATTGCCTGTCTTCAAGTAAAAGTATATTAAGTCTAATTTTGTTAGGTTTAGAGTAAAGGTTTATACCTTCTGCATAATTATATTTCTTTAATACTTTTTAGTTTCTTACTTCCAGGCATAGGTCAAATTGAAGGGGAGTTTATGGTAGGATAATGTGTATGTATAATTAAACTAATGATGACCTAGTGTTCTGTATTTGTGATTATGAGTAGTATTCTATATAGAAATCTCCAATAATAATATAATGTCGATGATGTCAGATACACTAATCAAAATGTATTGATGACTGCGAAACTTTTAAAAGCGTAGTAACTAGAACCATAGTAGTTCATATTTGTTATTTTGCTATCAATGCAGTTTTTGATCATTTTGATGAATATTTATTTGTACTTTACAAATAGAAGTTTGATATTCATCTAACGAAATGGTTGCAAAATGTTTGCTTCATAGTGAATGGCATTCTACTGAAGTTTCATGTGTTGACGAGTCTGTGAATGCAGGGTAAAAACTGGGTTTGGTTAGGTATCTTTGGGAGCTTATCACTCTTGTTAGGCGGACTGGCGAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTTGGGGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTCGGAGAAAGAGAAGGCAGGATTCCGCTAATTCTAGAGGATCAAGGGAGGAGAAAACGACACTCCGATGAAGAGAAAGGAAGGCAAGCCGAACCTACCCCTTATAAAGACGTCCTTGTAGGCCAATCTTCCTGAACTTCTTTTCCCTCTCCCACTTCAATGACTGACCCCTGCAACTGCACTTGATCAGGCTCAAAGTACCTCTTGTTACAGAATATTGTGTGCATTTGCATATAAAATTTATGAGATCATGGTTGATGTGCATGTTTATAGAAGTCCATAGAAGGTAATAGATATTGTTGATATATTTGATATCTGATCTTTTGTTTGGTTGTTTTTTCAAAATGACTTGTTTTTTAAATTAAACACTTAAAAATGTATTCTAAATATATCTTTAATATTTCATAATCTTCTTTAATTTTGATTC

mRNA sequence

CATCAACAAAGCTCTTTCTCTCTCCTACTTCTCTCTCTCTCTAAACTCATACACAGAGATTCTCATTTCCAATTTTTCCCAAAAGCTGCAACAGATTTTCATCCTCCAAAATCTCCAATTCCCATTACCAAACCCAAAATCAAATCAAATCCCAGAATCAGAGAGGCCATGGTCAAGTTAGTTTCCGCTAGAGATTTCAGAGTGTACGGCCCTCGGCCAGTAAGAAACCGGTCGGAGTACATCAACGCCGGCCTCTACTTGTTCGCCACTGTCCTCCTTCTCGGTGGCTTTCTTGCTCAGCTTTCCCGACAACCCAAATCTGGTTTGGCCCTAATTCTGCTCGCCACTGCCCTAATTACGATCGTTAATTTGCACGATCTCTTCGCCCATCTTGCTGGAATAGATTTCCGGTTGCCGCTGCTTGTTCAGTACGATGCGCAGCTTCTTTTTGTGGAATTTTCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTCTTCTCTTTGGCTGCTCTGTTTCTTCTAATTCAGTCCTTTCAGCAATGTTTAGTTGTTCCCGTAGAACAGTGTCGTTGTAAGTACTTGACAATGTTTTGGGCTCACCTGACTTTGTTGCATGCTATCACTGGAGGCCTCGCTCCTCATACCAGGGACACAGAATACAAAACCCCATATCGAAGACCAAAAGCTATGGCGAAATCTAGAAAATGCTATCCTCTCGAGCTGCCATTCAATTTACTGCTGCAGGAACAGAAGGGATATGATTATTACAAACTAGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGGGCCGATGGGCATGTTCAAATCTTGCAACAGAGCGTCCATGTTCCATTTTTAATTGGAAGCTTACTGTTCTTTGTTGCAGCAGTTCTCAATATCTATGAGCAGGCCGGGTTAGCCCATCACGGACTCAGACTTCTGGGTAAAAACTGGGTTTGGTTAGGTATCTTTGGGAGCTTATCACTCTTGTTAGGCGGACTGGCGAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTTGGGGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTCGGAGAAAGAGAAGGCAGGATTCCGCTAATTCTAGAGGATCAAGGGAGGAGAAAACGACACTCCGATGAAGAGAAAGGAAGGCAAGCCGAACCTACCCCTTATAAAGACGTCCTTGTAGGCCAATCTTCCTGAACTTCTTTTCCCTCTCCCACTTCAATGACTGACCCCTGCAACTGCACTTGATCAGGCTCAAAGTACCTCTTGTTACAGAATATTGTGTGCATTTGCATATAAAATTTATGAGATCATGGTTGATGTGCATGTTTATAGAAGTCCATAGAAGGTAATAGATATTGTTGATATATTTGATATCTGATCTTTTGTTTGGTTGTTTTTTCAAAATGACTTGTTTTTTAAATTAAACACTTAAAAATGTATTCTAAATATATCTTTAATATTTCATAATCTTCTTTAATTTTGATTC

Coding sequence (CDS)

ATGGTCAAGTTAGTTTCCGCTAGAGATTTCAGAGTGTACGGCCCTCGGCCAGTAAGAAACCGGTCGGAGTACATCAACGCCGGCCTCTACTTGTTCGCCACTGTCCTCCTTCTCGGTGGCTTTCTTGCTCAGCTTTCCCGACAACCCAAATCTGGTTTGGCCCTAATTCTGCTCGCCACTGCCCTAATTACGATCGTTAATTTGCACGATCTCTTCGCCCATCTTGCTGGAATAGATTTCCGGTTGCCGCTGCTTGTTCAGTACGATGCGCAGCTTCTTTTTGTGGAATTTTCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTCTTCTCTTTGGCTGCTCTGTTTCTTCTAATTCAGTCCTTTCAGCAATGTTTAGTTGTTCCCGTAGAACAGTGTCGTTGTAAGTACTTGACAATGTTTTGGGCTCACCTGACTTTGTTGCATGCTATCACTGGAGGCCTCGCTCCTCATACCAGGGACACAGAATACAAAACCCCATATCGAAGACCAAAAGCTATGGCGAAATCTAGAAAATGCTATCCTCTCGAGCTGCCATTCAATTTACTGCTGCAGGAACAGAAGGGATATGATTATTACAAACTAGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGGGCCGATGGGCATGTTCAAATCTTGCAACAGAGCGTCCATGTTCCATTTTTAATTGGAAGCTTACTGTTCTTTGTTGCAGCAGTTCTCAATATCTATGAGCAGGCCGGGTTAGCCCATCACGGACTCAGACTTCTGGGTAAAAACTGGGTTTGGTTAGGTATCTTTGGGAGCTTATCACTCTTGTTAGGCGGACTGGCGAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTTGGGGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTCGGAGAAAGAGAAGGCAGGATTCCGCTAATTCTAGAGGATCAAGGGAGGAGAAAACGACACTCCGATGAAGAGAAAGGAAGGCAAGCCGAACCTACCCCTTATAAAGACGTCCTTGTAGGCCAATCTTCCTGA

Protein sequence

MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFATVLLLGGFLAQLSRQPKSGLALILLATALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQSFQQCLVVPVEQCRCKYLTMFWAHLTLLHAITGGLAPHTRDTEYKTPYRRPKAMAKSRKCYPLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAEPTPYKDVLVGQSS

Homology

[Close]

BLAST of Lsi09G000370 vs. TrEMBL
Match: A0A0A0KJH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139580 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 3.8e-86
Identity = 163/180 (90.56%), Postives = 172/180 (95.56%), Query Frame = 1


Query: 189 LLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFL 248
           LL+QE+KG+DY+KLEKHASNMLIAGPALWMLGSI NSCQIYERAD HVQILQQSVH+PFL
Sbjct: 117 LLIQEKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFL 176

Query: 249 IGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQF 308
           IGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLS LLGGLANVLKVFKMQQF
Sbjct: 177 IGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQF 236

Query: 309 GGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGR-QAEPTPYKDVLVGQS 368
            GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+GR +A PTPYKDVLVGQS
Sbjct: 237 EGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 296

[Close]

BLAST of Lsi09G000370 vs. TrEMBL
Match: F6H6F5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02650 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.3e-65
Identity = 129/179 (72.07%), Postives = 147/179 (82.12%), Query Frame = 1


Query: 189 LLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFL 248
           L LQE+KGY Y+KLE+HA NMLIAGP LW+LGSI NSCQIYERADGH+QILQQSVH+PFL
Sbjct: 116 LFLQEEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFL 175

Query: 249 IGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQF 308
           +GSLLF V +++N +EQA L HHG+ LLG  WVWLG+FGSL   +GGL NV+KVFKMQQ 
Sbjct: 176 MGSLLFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQM 235

Query: 309 GGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAEPTPYKDVLVGQS 368
            GLRLEKLRGGA ERL+ EREG+IPLILEDQ RRK H  EE      PTPY+DVLVG S
Sbjct: 236 DGLRLEKLRGGAQERLIHEREGQIPLILEDQRRRKIHV-EETMPVVVPTPYRDVLVGHS 293

[Close]

BLAST of Lsi09G000370 vs. TrEMBL
Match: B9SBE0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716290 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.1e-64
Identity = 128/184 (69.57%), Postives = 149/184 (80.98%), Query Frame = 1


Query: 187 FNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVP 246
           F L LQE+K Y YYKLEKH+ NMLIAGP LW+LGSI NSCQIYERADGHVQILQ+SVH+P
Sbjct: 114 FFLFLQEEKRYGYYKLEKHSLNMLIAGPILWILGSIHNSCQIYERADGHVQILQESVHIP 173

Query: 247 FLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQ 306
           FL+GSLLF V A+LNI EQ GL HHGL+LLG++ VW+GIFG+L L +GGL NV+KVFKMQ
Sbjct: 174 FLMGSLLFLVGAILNIQEQDGLDHHGLQLLGRSLVWMGIFGTLLLFIGGLTNVVKVFKMQ 233

Query: 307 QFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG---RQAEPTPYKDVL 366
           Q  GLRLEKLRGGA ERL+ +REG++PLI E+  RRK   +E K        PTPYKDVL
Sbjct: 234 QIDGLRLEKLRGGAQERLIQQREGQLPLIAEEHRRRKMIIEETKAVPVPDPVPTPYKDVL 293

Query: 367 VGQS 368
           +GQS
Sbjct: 294 IGQS 297

[Close]

BLAST of Lsi09G000370 vs. TrEMBL
Match: A5ALP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 5.3e-64
Identity = 126/175 (72.00%), Postives = 144/175 (82.29%), Query Frame = 1


Query: 189 LLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFL 248
           L LQE+KGY Y+KLE+HA NMLIAGP LW+LGSI NSCQIYERADGH+QILQQSVH+PFL
Sbjct: 116 LFLQEEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFL 175

Query: 249 IGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQF 308
           +GSLLF V +++N +EQA L HHG+ LLG  WVWLG+FGSL   +GGL NV+KVFKMQQ 
Sbjct: 176 MGSLLFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQM 235

Query: 309 GGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAEPTPYKDVL 364
            GLRLEKLRGGA ERL+ EREG+IPLILEDQ RRK H  EE      PTPY+DVL
Sbjct: 236 DGLRLEKLRGGAQERLIHEREGQIPLILEDQRRRKIHV-EEXMPVVVPTPYRDVL 289

[Close]

BLAST of Lsi09G000370 vs. TrEMBL
Match: U5FPN4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s02280g PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-63
Identity = 127/180 (70.56%), Postives = 146/180 (81.11%), Query Frame = 1


Query: 188 NLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPF 247
           N  LQE KGY ++KLE+HA N+LIAGPALW+LGSI NSCQIYERADGHVQILQQSV +PF
Sbjct: 113 NPQLQEYKGYGHFKLERHALNLLIAGPALWVLGSIHNSCQIYERADGHVQILQQSVQIPF 172

Query: 248 LIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQ 307
           L+GSLLF V ++LNI+EQAG  HHGL+LLGK WVW GI GSL + +GGLANV+KVFKMQQ
Sbjct: 173 LMGSLLFLVGSILNIHEQAGRGHHGLKLLGKTWVWTGICGSLIIFIGGLANVVKVFKMQQ 232

Query: 308 FGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQ-AEPTPYKDVLVGQ 367
             GLRLEKLRGGA ERL+ EREG  PLILE++ RRK  + E +       TPYKDVLVGQ
Sbjct: 233 IDGLRLEKLRGGAQERLIREREGHSPLILEEERRRKMIAAETRATPLPATTPYKDVLVGQ 292

[Close]

BLAST of Lsi09G000370 vs. TAIR10
Match: AT5G24130.1 (AT5G24130.1 unknown protein)

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-51
Identity = 106/201 (52.74%), Postives = 133/201 (66.17%), Query Frame = 1


Query: 187 FNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVP 246
           F +  Q +    Y   E HA N+LIAGP LW++GSI NSCQIYERAD HVQILQQ V++P
Sbjct: 115 FFVFHQAETKRGYSGREHHALNLLIAGPLLWLIGSIHNSCQIYERADSHVQILQQCVYIP 174

Query: 247 FLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQ 306
           FL+GSLLF V+AVLN  + +G +  GL+LLG+ W+WLGI G++ L +GGL NV+KVF   
Sbjct: 175 FLVGSLLFLVSAVLNSLDISGSSRSGLKLLGERWIWLGISGAICLFVGGLLNVVKVFNFV 234

Query: 307 QFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAE----------- 366
           Q  GLRLEKLRGGA +RLL  REG +PL+ E++  RK  +D E   +A+           
Sbjct: 235 QISGLRLEKLRGGAQDRLLEGREGYLPLVAEEERIRKMEADHEASSRAKPRAHTTSKAGE 294

[Close]

BLAST of Lsi09G000370 vs. NCBI nr
Match: gi|659074392|ref|XP_008437579.1| (PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [Cucumis melo])

HSP 1 Score: 333.2 bits (853), Expect = 5.8e-88
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 1


Query: 189 LLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFL 248
           LL+QE+KG+DY KLEKHASNMLIAGPALWMLGSI NSCQIYERADGHVQILQQSVH+PFL
Sbjct: 117 LLIQEKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFL 176

Query: 249 IGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQF 308
           IGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLSLLLGGLANVLKVFKMQQF
Sbjct: 177 IGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQF 236

Query: 309 GGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAEPTPYKDVLVGQS 368
            GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+GR+A PTPYKDVLVGQS
Sbjct: 237 EGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]

BLAST of Lsi09G000370 vs. NCBI nr
Match: gi|778698926|ref|XP_011654624.1| (PREDICTED: uncharacterized protein LOC105435425 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 5.5e-86
Identity = 163/180 (90.56%), Postives = 172/180 (95.56%), Query Frame = 1


Query: 189 LLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFL 248
           LL+QE+KG+DY+KLEKHASNMLIAGPALWMLGSI NSCQIYERAD HVQILQQSVH+PFL
Sbjct: 117 LLIQEKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFL 176

Query: 249 IGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQF 308
           IGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLS LLGGLANVLKVFKMQQF
Sbjct: 177 IGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQF 236

Query: 309 GGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGR-QAEPTPYKDVLVGQS 368
            GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+GR +A PTPYKDVLVGQS
Sbjct: 237 EGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 296

[Close]

BLAST of Lsi09G000370 vs. NCBI nr
Match: gi|302143673|emb|CBI22534.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 129/179 (72.07%), Postives = 147/179 (82.12%), Query Frame = 1


Query: 189 LLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFL 248
           L LQE+KGY Y+KLE+HA NMLIAGP LW+LGSI NSCQIYERADGH+QILQQSVH+PFL
Sbjct: 116 LFLQEEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFL 175

Query: 249 IGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQF 308
           +GSLLF V +++N +EQA L HHG+ LLG  WVWLG+FGSL   +GGL NV+KVFKMQQ 
Sbjct: 176 MGSLLFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQM 235

Query: 309 GGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAEPTPYKDVLVGQS 368
            GLRLEKLRGGA ERL+ EREG+IPLILEDQ RRK H  EE      PTPY+DVLVG S
Sbjct: 236 DGLRLEKLRGGAQERLIHEREGQIPLILEDQRRRKIHV-EETMPVVVPTPYRDVLVGHS 293

[Close]

BLAST of Lsi09G000370 vs. NCBI nr
Match: gi|225462749|ref|XP_002268340.1| (PREDICTED: uncharacterized protein LOC100244979 [Vitis vinifera])

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 129/179 (72.07%), Postives = 147/179 (82.12%), Query Frame = 1


Query: 189 LLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFL 248
           L LQE+KGY Y+KLE+HA NMLIAGP LW+LGSI NSCQIYERADGH+QILQQSVH+PFL
Sbjct: 116 LFLQEEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFL 175

Query: 249 IGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQF 308
           +GSLLF V +++N +EQA L HHG+ LLG  WVWLG+FGSL   +GGL NV+KVFKMQQ 
Sbjct: 176 MGSLLFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQM 235

Query: 309 GGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAEPTPYKDVLVGQS 368
            GLRLEKLRGGA ERL+ EREG+IPLILEDQ RRK H  EE      PTPY+DVLVG S
Sbjct: 236 DGLRLEKLRGGAQERLIHEREGQIPLILEDQRRRKIHV-EETMPVVVPTPYRDVLVGHS 293

[Close]

BLAST of Lsi09G000370 vs. NCBI nr
Match: gi|255564629|ref|XP_002523309.1| (PREDICTED: uncharacterized protein LOC8263485 [Ricinus communis])

HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64
Identity = 128/184 (69.57%), Postives = 149/184 (80.98%), Query Frame = 1


Query: 187 FNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVP 246
           F L LQE+K Y YYKLEKH+ NMLIAGP LW+LGSI NSCQIYERADGHVQILQ+SVH+P
Sbjct: 114 FFLFLQEEKRYGYYKLEKHSLNMLIAGPILWILGSIHNSCQIYERADGHVQILQESVHIP 173

Query: 247 FLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQ 306
           FL+GSLLF V A+LNI EQ GL HHGL+LLG++ VW+GIFG+L L +GGL NV+KVFKMQ
Sbjct: 174 FLMGSLLFLVGAILNIQEQDGLDHHGLQLLGRSLVWMGIFGTLLLFIGGLTNVVKVFKMQ 233

Query: 307 QFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG---RQAEPTPYKDVL 366
           Q  GLRLEKLRGGA ERL+ +REG++PLI E+  RRK   +E K        PTPYKDVL
Sbjct: 234 QIDGLRLEKLRGGAQERLIQQREGQLPLIAEEHRRRKMIIEETKAVPVPDPVPTPYKDVL 293

Query: 367 VGQS 368
           +GQS
Sbjct: 294 IGQS 297

The following BLAST results are available for this feature:

BLAST of Lsi09G000370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G000370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJH6_CUCSA	3.8e-86	90.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139580 PE=4 SV=1	[more]
F6H6F5_VITVI	1.3e-65	72.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02650 PE=4 SV=...	[more]
B9SBE0_RICCO	4.1e-64	69.57	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716290 PE=4 SV=1	[more]
A5ALP2_VITVI	5.3e-64	72.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1	[more]
U5FPN4_POPTR	3.5e-63	70.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s02280g PE=4 SV=1	[more]

BLAST of Lsi09G000370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24130.1	2.7e-51	52.74	unknown protein	[more]

BLAST of Lsi09G000370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074392\|ref\|XP_008437579.1\|	5.8e-88	92.18	PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [...	[more]
gi\|778698926\|ref\|XP_011654624.1\|	5.5e-86	90.56	PREDICTED: uncharacterized protein LOC105435425 [Cucumis sativus]	[more]
gi\|302143673\|emb\|CBI22534.3\|	1.8e-65	72.07	unnamed protein product [Vitis vinifera]	[more]
gi\|225462749\|ref\|XP_002268340.1\|	1.8e-65	72.07	PREDICTED: uncharacterized protein LOC100244979 [Vitis vinifera]	[more]
gi\|255564629\|ref\|XP_002523309.1\|	5.9e-64	69.57	PREDICTED: uncharacterized protein LOC8263485 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G000370.1	Lsi09G000370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34967	FAMILY NOT NAMED	coord: 192..367 score: 8.2E-144coord: 2..119 score: 8.2E
None	No IPR available	PANTHER	PTHR34967:SF1	SUBFAMILY NOT NAMED	coord: 2..119 score: 8.2E-144coord: 192..367 score: 8.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G000370	Csa5G139580	Cucumber (Chinese Long) v2	culsiB322
Lsi09G000370	CSPI05G03330	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G000370	Cucsa.202000	Cucumber (Gy14) v1	cgylsiB347
Lsi09G000370	CmoCh02G011310	Cucurbita moschata (Rifu)	cmolsiB520
Lsi09G000370	Cla004907	Watermelon (97103) v1	lsiwmB027
Lsi09G000370	MELO3C005871	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G000370	ClCG01G000560	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G000370	Cla97C01G000610	Watermelon (97103) v2	lsiwmbB007
Lsi09G000370	Bhi12G000543	Wax gourd	lsiwgoB024
Lsi09G000370	Cp4.1LG05g06170	Cucurbita pepo (Zucchini)	cpelsiB579
Lsi09G000370	Carg14028	Silver-seed gourd	carlsiB457
Lsi09G000370	CsaV3_5G000660	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G000370	Bottle gourd (USVL1VR-Ls)	lsilsiB013
Lsi09G000370	Bottle gourd (USVL1VR-Ls)	lsilsiB014
Lsi09G000370	Cucumber (Gy14) v1	cgylsiB413
Lsi09G000370	Cucurbita maxima (Rimu)	cmalsiB226
Lsi09G000370	Cucurbita maxima (Rimu)	cmalsiB262
Lsi09G000370	Cucurbita maxima (Rimu)	cmalsiB298
Lsi09G000370	Cucurbita maxima (Rimu)	cmalsiB363
Lsi09G000370	Cucurbita maxima (Rimu)	cmalsiB536
Lsi09G000370	Cucurbita moschata (Rifu)	cmolsiB214
Lsi09G000370	Cucurbita moschata (Rifu)	cmolsiB249
Lsi09G000370	Cucurbita moschata (Rifu)	cmolsiB286
Lsi09G000370	Cucurbita moschata (Rifu)	cmolsiB351
Lsi09G000370	Cucurbita pepo (Zucchini)	cpelsiB019
Lsi09G000370	Cucurbita pepo (Zucchini)	cpelsiB163
Lsi09G000370	Cucurbita pepo (Zucchini)	cpelsiB134
Lsi09G000370	Cucurbita pepo (Zucchini)	cpelsiB486
Lsi09G000370	Wild cucumber (PI 183967)	cpilsiB150
Lsi09G000370	Cucumber (Chinese Long) v2	culsiB151
Lsi09G000370	Melon (DHL92) v3.5.1	lsimeB031
Lsi09G000370	Melon (DHL92) v3.5.1	lsimeB035
Lsi09G000370	Watermelon (Charleston Gray)	lsiwcgB018
Lsi09G000370	Watermelon (Charleston Gray)	lsiwcgB021
Lsi09G000370	Watermelon (97103) v1	lsiwmB018
Lsi09G000370	Watermelon (97103) v1	lsiwmB023
Lsi09G000370	Cucumber (Gy14) v2	cgyblsiB137
Lsi09G000370	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G000370	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G000370	Melon (DHL92) v3.6.1	lsimedB033
Lsi09G000370	Melon (DHL92) v3.6.1	lsimedB039
Lsi09G000370	Silver-seed gourd	carlsiB276
Lsi09G000370	Silver-seed gourd	carlsiB487
Lsi09G000370	Silver-seed gourd	carlsiB902
Lsi09G000370	Cucumber (Chinese Long) v3	cuclsiB164
Lsi09G000370	Watermelon (97103) v2	lsiwmbB019
Lsi09G000370	Wax gourd	lsiwgoB045