Cucsa.202000 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.202000
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionGeneral transcription factor IIF subunit 1
Locationscaffold01376 : 164517 .. 166679 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAGCTAGTCTCCGCTAGAGATTTCAGGGTCTATGGCCCTCGTTCGGTTCGGAACCGGGCGGAGTACATCAATGCCGGCCTCTACTTGTTCGCCACTATCCTCCTTCTGGGTGGCTTTGTTGCTCAGCTTTCCCGAGAACCCAAATCTGGTTTGGCACTAATTCTTCTCGCCACTTCCCTATTTGCCATCGTTAATTTGCATGATCTCTTCGCCCATCTCGCCGGAATTGATTACCGGTTGCCACTGCTTGTTCAGTACGATGCCCAGCTTTTTTTtGTGGAATTTGCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTTTTGTCTTTCGCTGCACTGTTTCTTCTAATTCAGGTCCTTATTAATCGTTTGTTTGCTTTACTCTGCTTAATTTAGTTTTCTAGGTTAATGGTAATACTATTTTTGCTTTGGAATTTCTAACAAAATTGCACTTGTCGATCTTGATGAGAAATTGTTTTGAGGGGCTGGTCAATTGGTTTTATGAGATGTTCTGTGTGCTACCTAAGTTTAATTACTCTTGTTCTCCTCTGTTATTAGTCTTGGATTTTAGAATTAGTCAAAATCAGCAACCCTTTTAGAACCATCCACTTCTTTGGATAGTTTCAAGTTTGAGTCAATGATTTCAGTGCCGTTTTCCCTGCCATTGGTTGTGATAATTTTGGGCAATGAGTGACTGAGTGCGTTATGTAAGGCTTGGTGGCAACATTTCTGCTACTCATTTCTTCAATTTTTCTTTAAAGAAATAAAAGCAAAACTGTGTTTGGCAATTGTTTCTATTTCTTATTGAAATTTGAAAGAACAAAAAAGCAGAAGATGGATAATTTTATAGGGGAAAATATTGTGTAGTTTTTTCAGCAATAGTCTCCCAGTTTTCAAATATTCAATTATTAACAAAAGAACAAGATGCAGTCGTTTCAGCAATGTTTAATTGTTCGAAGAACAGTGTGTTGTTGTAAGTACTTGACAATGTTTTGGGTTCACCTGACTTCGTTACATGCTATCACTGGAGGCCCTCCTCACACCCGGGACACAGAAATAAAAAACCCCGTGTCAAAGATCAAAAGCCATGGCGAAATCTAGAAATGCCATCCTCGGTTTCAATGATTGCACATTGTAGGAAAACTGTTTGATCAACTTCGTTCCGTTCCTAATGTTAATCTTTTACAGTATTCATGTTTGTTGTGTTGTCCTCCTTTTGCACTTTACAAGAGCTGCCATTCAATTTGCTGCTGCAGGAAAAGAAGGGACATGATTATCACAAACTCGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCGATCCACAACTCATGCCAAATCTACGAAAGGGCTGATGCACATGTTCAAATCTTGCAACAGAGTGTCCATATTCCATTTTTAATAGGAAGCTTGCTGTTTTTTGTTGCAGCAGTTCTCAATAGCTACGAGCAAGTTGGGTTAGCCCATCATGGTCTCAAACTTCTGGTATGTGACATTGAATACATACATTTTACTGTCAGTAGCGAACAATTGATTCTGAATTGCCTTTAAAAAGCTTATTCAAAAAAGGAAAAAGTTGTCACAATGATTATGGTTCCACCCTCAAGAATAATAGAGTGTCAATGACGTGAGGTAAAGAAATCAAAATAGATTGGTGATTGTGAACTATAACCACGGTTCATATTGTTGTTTTGCTATGAATTCAAATTTTAAACATTTTGATGAATATTTTAGTTATAAGCAACAAACAAAAGTTTGATAATCGGTCTAACAAAATGGTTGCATAAATATTTGCTTCAAAAGGAATGGCATTTTACTGAAGTTTTACGTGTTGACGAGTGTGTGAATGCAGGGCAAAAACTGGATTTGGTTAGGTATCTTTGGGAGCTTATCGTTCTTGTTAGGCGGATTGGCAAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTCGAGGGACTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTTGGAGAAAGAGAAGGCAGGATTCCTCTGATTCTAGAGGATCAGGGTAGGAGAAAACGACACTCAGATGAAGAAAGAGGAAGGGTCGAAGCCAGACCAACGCCTTATAAAGACGTACTCGTAGGCCAATCACCCTGA

mRNA sequence

ATGGTCAAGCTAGTCTCCGCTAGAGATTTCAGGGTCTATGGCCCTCGTTCGGTTCGGAACCGGGCGGAGTACATCAATGCCGGCCTCTACTTGTTCGCCACTATCCTCCTTCTGGGTGGCTTTGTTGCTCAGCTTTCCCGAGAACCCAAATCTGGTTTGGCACTAATTCTTCTCGCCACTTCCCTATTTGCCATCGTTAATTTGCATGATCTCTTCGCCCATCTCGCCGGAATTGATTACCGGTTGCCACTGCTTGTTCAGTACGATGCCCAGCTTTTTTTTGTGGAATTTGCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTTTTGTCTTTCGCTGCACTGTTTCTTCTAATTCAGGAAAAGAAGGGACATGATTATCACAAACTCGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCGATCCACAACTCATGCCAAATCTACGAAAGGGCTGATGCACATGTTCAAATCTTGCAACAGAGTGTCCATATTCCATTTTTAATAGGAAGCTTGCTGTTTTTTGTTGCAGCAGTTCTCAATAGCTACGAGCAAGTTGGGTTAGCCCATCATGGTCTCAAACTTCTGGGCAAAAACTGGATTTGGTTAGGTATCTTTGGGAGCTTATCGTTCTTGTTAGGCGGATTGGCAAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTCGAGGGACTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTTGGAGAAAGAGAAGGCAGGATTCCTCTGATTCTAGAGGATCAGGGTAGGAGAAAACGACACTCAGATGAAGAAAGAGGAAGGGTCGAAGCCAGACCAACGCCTTATAAAGACGTACTCGTAGGCCAATCACCCTGA

Coding sequence (CDS)

ATGGTCAAGCTAGTCTCCGCTAGAGATTTCAGGGTCTATGGCCCTCGTTCGGTTCGGAACCGGGCGGAGTACATCAATGCCGGCCTCTACTTGTTCGCCACTATCCTCCTTCTGGGTGGCTTTGTTGCTCAGCTTTCCCGAGAACCCAAATCTGGTTTGGCACTAATTCTTCTCGCCACTTCCCTATTTGCCATCGTTAATTTGCATGATCTCTTCGCCCATCTCGCCGGAATTGATTACCGGTTGCCACTGCTTGTTCAGTACGATGCCCAGCTTTTTTTtGTGGAATTTGCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTTTTGTCTTTCGCTGCACTGTTTCTTCTAATTCAGGAAAAGAAGGGACATGATTATCACAAACTCGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCGATCCACAACTCATGCCAAATCTACGAAAGGGCTGATGCACATGTTCAAATCTTGCAACAGAGTGTCCATATTCCATTTTTAATAGGAAGCTTGCTGTTTTTTGTTGCAGCAGTTCTCAATAGCTACGAGCAAGTTGGGTTAGCCCATCATGGTCTCAAACTTCTGGGCAAAAACTGGATTTGGTTAGGTATCTTTGGGAGCTTATCGTTCTTGTTAGGCGGATTGGCAAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTCGAGGGACTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTTGGAGAAAGAGAAGGCAGGATTCCTCTGATTCTAGAGGATCAGGGTAGGAGAAAACGACACTCAGATGAAGAAAGAGGAAGGGTCGAAGCCAGACCAACGCCTTATAAAGACGTACTCGTAGGCCAATCACCCTGA

Protein sequence

MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLATSLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQEKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP*
Homology
[Close]
BLAST of Cucsa.202000 vs. TrEMBL
Match: A0A0A0KJH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139580 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 3.7e-164
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 298
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297

[Close]
BLAST of Cucsa.202000 vs. TrEMBL
Match: F6H6F5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02650 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 4.4e-109
Identity = 201/296 (67.91%), Postives = 240/296 (81.08%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SAR+ R+YG R  RNR EYINAGLY+FATI+LL GFV+QLSR+PKSGLAL+++  
Sbjct: 1   MVKLASARESRLYGTRLARNRFEYINAGLYVFATIVLLSGFVSQLSRDPKSGLALMMIGL 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
            L  +VN+HDL AH+AGIDYRL L+ ++D QL  VEF+VPF+QA+G LL     LFL +Q
Sbjct: 61  GLLFVVNVHDLVAHMAGIDYRLGLM-EFDLQLGLVEFSVPFVQAMGYLLSFLGILFLFLQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           E+KG+ Y KLE+HA NMLIAGP LW+LGSIHNSCQIYERAD H+QILQQSVHIPFL+GSL
Sbjct: 121 EEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LF V +++N +EQ  L HHG+ LLG  W+WLG+FGSL F +GGL NV+KVFKMQQ +GLR
Sbjct: 181 LFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 297
           LEKLRGGA ERL+ EREG+IPLILEDQ RRK H +E    V   PTPY+DVLVG S
Sbjct: 241 LEKLRGGAQERLIHEREGQIPLILEDQRRRKIHVEETMPVVV--PTPYRDVLVGHS 293

[Close]
BLAST of Cucsa.202000 vs. TrEMBL
Match: A5ALP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107
Identity = 198/292 (67.81%), Postives = 237/292 (81.16%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SAR+ R+YG R  RNR EYINAGLY+FATI+LL GFV+QLSR+PKSGLAL+++  
Sbjct: 1   MVKLASARESRLYGTRLARNRFEYINAGLYVFATIVLLSGFVSQLSRDPKSGLALMMIGL 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
            L  +VN+HDL AH+AGIDYRL L+ ++D QL  VEF+VPF+QA+G LL     LFL +Q
Sbjct: 61  GLLFVVNVHDLVAHMAGIDYRLGLM-EFDLQLGLVEFSVPFVQAMGYLLSFLGILFLFLQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           E+KG+ Y KLE+HA NMLIAGP LW+LGSIHNSCQIYERAD H+QILQQSVHIPFL+GSL
Sbjct: 121 EEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LF V +++N +EQ  L HHG+ LLG  W+WLG+FGSL F +GGL NV+KVFKMQQ +GLR
Sbjct: 181 LFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVL 293
           LEKLRGGA ERL+ EREG+IPLILEDQ RRK H +E    V   PTPY+DVL
Sbjct: 241 LEKLRGGAQERLIHEREGQIPLILEDQRRRKIHVEEXMPVVV--PTPYRDVL 289

[Close]
BLAST of Cucsa.202000 vs. TrEMBL
Match: B9SBE0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716290 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 4.1e-107
Identity = 200/298 (67.11%), Postives = 238/298 (79.87%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SAR+ R+YGPR  RNRAEYINAGLY+FATI+LLGGF A  S EPKSGL L+ +A 
Sbjct: 1   MVKLASARESRMYGPRLGRNRAEYINAGLYVFATIVLLGGFAALFSMEPKSGLVLMFIAL 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
            L   VNLHDLFAHLAGIDYRLPL+  +D QL  VEFAVP +QA+G+LLL     FL +Q
Sbjct: 61  GLIMAVNLHDLFAHLAGIDYRLPLM-GFDVQLALVEFAVPIVQALGALLLFLGIFFLFLQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           E+K + Y+KLEKH+ NMLIAGP LW+LGSIHNSCQIYERAD HVQILQ+SVHIPFL+GSL
Sbjct: 121 EEKRYGYYKLEKHSLNMLIAGPILWILGSIHNSCQIYERADGHVQILQESVHIPFLMGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LF V A+LN  EQ GL HHGL+LLG++ +W+GIFG+L   +GGL NV+KVFKMQQ +GLR
Sbjct: 181 LFLVGAILNIQEQDGLDHHGLQLLGRSLVWMGIFGTLLLFIGGLTNVVKVFKMQQIDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG--RVEARPTPYKDVLVGQS 297
           LEKLRGGA ERL+ +REG++PLI E+  RRK   +E +     +  PTPYKDVL+GQS
Sbjct: 241 LEKLRGGAQERLIQQREGQLPLIAEEHRRRKMIIEETKAVPVPDPVPTPYKDVLIGQS 297

[Close]
BLAST of Cucsa.202000 vs. TrEMBL
Match: A0A161YGX4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020306 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.7e-106
Identity = 196/296 (66.22%), Postives = 235/296 (79.39%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SAR+ R+YGP   RNR+EY+NAGLY+FAT++LLGGFVAQ S E +SGL +IL+  
Sbjct: 1   MVKLASARESRMYGPVRTRNRSEYMNAGLYVFATVMLLGGFVAQFSMERRSGLVVILIGL 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
               +VN+HDL AHLAGIDYRL  L+++D QL  VEFAVP +Q+IG+LL   A LF+ IQ
Sbjct: 61  GFIILVNVHDLVAHLAGIDYRLFSLMEHDLQLGLVEFAVPVVQSIGTLLSFLAILFIFIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           E+ G+ Y+K EKHA NMLIAG ALW+LGS+HNSCQIYERADAHVQ+LQ+SVHIPFL+GSL
Sbjct: 121 EEMGYGYYKWEKHAVNMLIAGAALWLLGSVHNSCQIYERADAHVQVLQESVHIPFLLGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LF V +VLN  EQ G+ HHGL LL    IWLGI GS  F +GGLANV+KVFKMQQ +GLR
Sbjct: 181 LFLVGSVLNCQEQAGMFHHGLDLLSGTLIWLGICGSFLFFVGGLANVIKVFKMQQVDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 297
           LEKLR GA ERL  ERE R+PLILE+QGRRKR++ E +      PTPY+DVLVGQ+
Sbjct: 241 LEKLRRGAQERLADEREARVPLILEEQGRRKRNNVEVQHTTTPNPTPYRDVLVGQT 296

[Close]
BLAST of Cucsa.202000 vs. TAIR10
Match: AT5G24130.1 (AT5G24130.1 unknown protein)

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-93
Identity = 182/316 (57.59%), Postives = 218/316 (68.99%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQ-LSREPKSGLALILLA 60
           MVKL +AR+ R YGPR  R+RAEYINAGLYLFAT++L+GGF A   S EP+SGL LILLA
Sbjct: 1   MVKLATAREIRTYGPRLGRSRAEYINAGLYLFATVVLIGGFTATGFSWEPRSGLVLILLA 60

Query: 61  TSLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLI 120
             L   VN+HDL AHLAGIDYRL L+ +YD QL  VEFAVP +Q  GS++      F+  
Sbjct: 61  LVLITAVNVHDLVAHLAGIDYRLRLM-EYDLQLGLVEFAVPLVQIAGSVVFFLGIFFVFH 120

Query: 121 QEKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGS 180
           Q +    Y   E HA N+LIAGP LW++GSIHNSCQIYERAD+HVQILQQ V+IPFL+GS
Sbjct: 121 QAETKRGYSGREHHALNLLIAGPLLWLIGSIHNSCQIYERADSHVQILQQCVYIPFLVGS 180

Query: 181 LLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGL 240
           LLF V+AVLNS +  G +  GLKLLG+ WIWLGI G++   +GGL NV+KVF   Q  GL
Sbjct: 181 LLFLVSAVLNSLDISGSSRSGLKLLGERWIWLGISGAICLFVGGLLNVVKVFNFVQISGL 240

Query: 241 RLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR------------------- 296
           RLEKLRGGA +RLL  REG +PL+ E++  RK  +D E                      
Sbjct: 241 RLEKLRGGAQDRLLEGREGYLPLVAEEERIRKMEADHEASSRAKPRAHTTSKAGEGATET 300

[Close]
BLAST of Cucsa.202000 vs. NCBI nr
Match: gi|778698926|ref|XP_011654624.1| (PREDICTED: uncharacterized protein LOC105435425 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 5.3e-164
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 298
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 297

[Close]
BLAST of Cucsa.202000 vs. NCBI nr
Match: gi|659074392|ref|XP_008437579.1| (PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [Cucumis melo])

HSP 1 Score: 562.4 bits (1448), Expect = 4.8e-157
Identity = 288/297 (96.97%), Postives = 290/297 (97.64%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKLVSARDFRVYGPR +RNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           SL AIVNLHDLFAHLAGID+RLPLLVQYDAQLFFVEFAVPFLQAIGSLLLS AALFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           EKKGHDY KLEKHASNMLIAGPALWMLGSIHNSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLS LLGGLANVLKVFKMQQFEGLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQSP 298
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR EARPTPYKDVLVGQSP
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGR-EARPTPYKDVLVGQSP 296

[Close]
BLAST of Cucsa.202000 vs. NCBI nr
Match: gi|1009122785|ref|XP_015878189.1| (PREDICTED: uncharacterized protein LOC107414567 [Ziziphus jujuba])

HSP 1 Score: 408.7 bits (1049), Expect = 8.8e-111
Identity = 204/297 (68.69%), Postives = 242/297 (81.48%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SAR+ R+YGPR  RNR EY+NAGLY+FAT++LLGGFVA+LS+EPKSGL L+++A 
Sbjct: 1   MVKLASAREVRMYGPRLSRNRTEYMNAGLYVFATVVLLGGFVAELSKEPKSGLVLLMIAL 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
            +  +VNLHDL AHLAGIDYRL L+ ++D QL  VEFAVP LQA+GSLL     LFL IQ
Sbjct: 61  VVIMMVNLHDLLAHLAGIDYRLTLM-EFDIQLALVEFAVPLLQALGSLLFFLGVLFLFIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           E KG    KLEKHA NMLIAGP LW++GSIHNSCQIYERAD HVQILQQ VHIPFL GS+
Sbjct: 121 EYKGRVQSKLEKHALNMLIAGPVLWVVGSIHNSCQIYERADGHVQILQQGVHIPFLTGSV 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LF V A+LN++EQ GL HHGL+LLGK WIW+GIFGSL F++GG  NV+KVFKMQQ + LR
Sbjct: 181 LFLVGAILNAHEQAGLNHHGLQLLGKCWIWVGIFGSLLFVIGGFMNVVKVFKMQQVDDLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVE-ARPTPYKDVLVGQS 297
           LEKLRGGA+ERL+ ER+G++PLILEDQ R K+H   E  +V    PTPYKDVL+GQ+
Sbjct: 241 LEKLRGGAHERLINERDGQVPLILEDQRRIKKHIAAEEPKVALPLPTPYKDVLIGQT 296

[Close]
BLAST of Cucsa.202000 vs. NCBI nr
Match: gi|657969922|ref|XP_008376696.1| (PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [Malus domestica])

HSP 1 Score: 404.8 bits (1039), Expect = 1.3e-109
Identity = 205/293 (69.97%), Postives = 243/293 (82.94%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SAR+FR+YGPR  RNRAEY+NAGLY+FAT++LLGGFVAQLS+EPKSGL L+L+A 
Sbjct: 1   MVKLASAREFRMYGPRLSRNRAEYMNAGLYVFATVVLLGGFVAQLSKEPKSGLVLMLIAL 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
           +L  +VNLHDL AHLA  DYR+PL+ ++D QL  VEFAVP +QA+G++L     LFLLIQ
Sbjct: 61  ALILVVNLHDLVAHLAMFDYRMPLM-EFDLQLALVEFAVPVVQALGTVLSFLGILFLLIQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
            +KG+ Y KLE+HA NMLIAGP LW+LGSIHNSCQIYERAD HVQILQQS+HIPFLIGS+
Sbjct: 121 AEKGYGYSKLERHAKNMLIAGPVLWLLGSIHNSCQIYERADGHVQILQQSIHIPFLIGSV 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQF-EGL 240
           LF V A+LNS EQ GL  HGL+LLG+NW+WLG+ GSL FL+GGLANV+KVFKMQQ  +GL
Sbjct: 181 LFTVGAILNSREQHGLFLHGLQLLGRNWVWLGMGGSLFFLIGGLANVVKVFKMQQMGDGL 240

Query: 241 RLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVL 293
           RLEKLRGGA ERL+ EREG++PLILED  RR      +R  V+  PTPYKDVL
Sbjct: 241 RLEKLRGGAQERLVHEREGQVPLILEDHRRR----SSQRSSVQPVPTPYKDVL 288

[Close]
BLAST of Cucsa.202000 vs. NCBI nr
Match: gi|302143673|emb|CBI22534.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 402.5 bits (1033), Expect = 6.3e-109
Identity = 201/296 (67.91%), Postives = 240/296 (81.08%), Query Frame = 1 

Query: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60
           MVKL SAR+ R+YG R  RNR EYINAGLY+FATI+LL GFV+QLSR+PKSGLAL+++  
Sbjct: 1   MVKLASARESRLYGTRLARNRFEYINAGLYVFATIVLLSGFVSQLSRDPKSGLALMMIGL 60

Query: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120
            L  +VN+HDL AH+AGIDYRL L+ ++D QL  VEF+VPF+QA+G LL     LFL +Q
Sbjct: 61  GLLFVVNVHDLVAHMAGIDYRLGLM-EFDLQLGLVEFSVPFVQAMGYLLSFLGILFLFLQ 120

Query: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180
           E+KG+ Y KLE+HA NMLIAGP LW+LGSIHNSCQIYERAD H+QILQQSVHIPFL+GSL
Sbjct: 121 EEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240
           LF V +++N +EQ  L HHG+ LLG  W+WLG+FGSL F +GGL NV+KVFKMQQ +GLR
Sbjct: 181 LFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 297
           LEKLRGGA ERL+ EREG+IPLILEDQ RRK H +E    V   PTPY+DVLVG S
Sbjct: 241 LEKLRGGAQERLIHEREGQIPLILEDQRRRKIHVEETMPVVV--PTPYRDVLVGHS 293

The following BLAST results are available for this feature:
BLAST of Cucsa.202000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJH6_CUCSA3.7e-164100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139580 PE=4 SV=1[more]
F6H6F5_VITVI4.4e-10967.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02650 PE=4 SV=... [more]
A5ALP2_VITVI1.9e-10767.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1[more]
B9SBE0_RICCO4.1e-10767.11Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716290 PE=4 SV=1[more]
A0A161YGX4_DAUCA2.7e-10666.22Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020306 PE=4 SV=1[more]
BLAST of Cucsa.202000 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24130.12.3e-9357.59 unknown protein[more]
BLAST of Cucsa.202000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778698926|ref|XP_011654624.1|5.3e-164100.00PREDICTED: uncharacterized protein LOC105435425 [Cucumis sativus][more]
gi|659074392|ref|XP_008437579.1|4.8e-15796.97PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [... [more]
gi|1009122785|ref|XP_015878189.1|8.8e-11168.69PREDICTED: uncharacterized protein LOC107414567 [Ziziphus jujuba][more]
gi|657969922|ref|XP_008376696.1|1.3e-10969.97PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [... [more]
gi|302143673|emb|CBI22534.3|6.3e-10967.91unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.202000.1Cucsa.202000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34967FAMILY NOT NAMEDcoord: 2..296
score: 6.2E
NoneNo IPR availablePANTHERPTHR34967:SF1SUBFAMILY NOT NAMEDcoord: 2..296
score: 6.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.202000Cla004907Watermelon (97103) v1cgywmB400
Cucsa.202000Csa5G139580Cucumber (Chinese Long) v2cgycuB309
Cucsa.202000MELO3C005871Melon (DHL92) v3.5.1cgymeB367
Cucsa.202000ClCG01G000560Watermelon (Charleston Gray)cgywcgB375
Cucsa.202000CSPI05G03330Wild cucumber (PI 183967)cgycpiB322
Cucsa.202000CmaCh02G011040Cucurbita maxima (Rimu)cgycmaB0602
Cucsa.202000CmoCh02G011310Cucurbita moschata (Rifu)cgycmoB0603
Cucsa.202000Lsi09G000370Bottle gourd (USVL1VR-Ls)cgylsiB347
Cucsa.202000Cp4.1LG05g06170Cucurbita pepo (Zucchini)cgycpeB0576
Cucsa.202000CsaV3_5G000660Cucumber (Chinese Long) v3cgycucB327
Cucsa.202000Cla97C01G000610Watermelon (97103) v2cgywmbB379
Cucsa.202000Bhi12G000543Wax gourdcgywgoB424
Cucsa.202000Carg14028Silver-seed gourdcarcgyB0583
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.202000Cucumber (Chinese Long) v3cgycucB325
Cucsa.202000Watermelon (97103) v2cgywmbB380
Cucsa.202000Watermelon (97103) v2cgywmbB381
Cucsa.202000Wax gourdcgywgoB428
Cucsa.202000Cucumber (Gy14) v1cgycgyB116
Cucsa.202000Cucurbita maxima (Rimu)cgycmaB0599
Cucsa.202000Cucurbita maxima (Rimu)cgycmaB0600
Cucsa.202000Cucurbita maxima (Rimu)cgycmaB0601
Cucsa.202000Cucurbita moschata (Rifu)cgycmoB0597
Cucsa.202000Cucurbita moschata (Rifu)cgycmoB0600
Cucsa.202000Cucurbita moschata (Rifu)cgycmoB0601
Cucsa.202000Cucurbita moschata (Rifu)cgycmoB0602
Cucsa.202000Wild cucumber (PI 183967)cgycpiB320
Cucsa.202000Cucumber (Chinese Long) v2cgycuB307
Cucsa.202000Melon (DHL92) v3.5.1cgymeB368
Cucsa.202000Watermelon (Charleston Gray)cgywcgB377
Cucsa.202000Watermelon (Charleston Gray)cgywcgB376
Cucsa.202000Watermelon (97103) v1cgywmB397
Cucsa.202000Watermelon (97103) v1cgywmB398
Cucsa.202000Cucurbita pepo (Zucchini)cgycpeB0570
Cucsa.202000Cucurbita pepo (Zucchini)cgycpeB0571
Cucsa.202000Cucurbita pepo (Zucchini)cgycpeB0573
Cucsa.202000Cucurbita pepo (Zucchini)cgycpeB0574
Cucsa.202000Bottle gourd (USVL1VR-Ls)cgylsiB348
Cucsa.202000Bottle gourd (USVL1VR-Ls)cgylsiB349
Cucsa.202000Melon (DHL92) v3.6.1cgymedB363
Cucsa.202000Melon (DHL92) v3.6.1cgymedB364
Cucsa.202000Melon (DHL92) v3.6.1cgymedB366
Cucsa.202000Silver-seed gourdcarcgyB1107
Cucsa.202000Silver-seed gourdcarcgyB0352
Cucsa.202000Silver-seed gourdcarcgyB0617