Cp4.1LG05g06170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g06170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGeneral transcription factor IIF subunit 1
LocationCp4.1LG05 : 3732313 .. 3735807 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGTCAACAACCCCTCTGTTTCTCTCTCTAAACCCCTTCGTAGATTCCGGGCTTCATTTCCCCCTGCACCACAAACAGATCAAGTCCAGGAGAACACACAAAATCTGAACCAGAGGCCATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGGGCGTATGGCCCTCGGGCGGCCCGGAGCCGGGCCGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCTTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTTGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGTGCGGATTAATAATTTGATTCCCGTTGATTCATTCTGTAATATGTCATACTCTGATCAAGATTTCGAAGTGATTTCGAAGTGTGAAGACTATCCTTACAAACCATTATACAACACGACCATGTTAGGTGCGAAGATTGTCCTCGCAAATTAACATGATTCTTTTAACCTATTTTGATGTTTTTTTAGGTAAATGTATGCTATGATTGAGCTACCGAAAAGAGAAGTTGTTCTTTGTTGATATAAGTGGTAACTTTCCGTTCTTTTAAGTACTTCTTAACGTTACGTAGTCAAGATCCTCAAAATTACTCTAGTTCGGATGTAGTCTACCCCTTCTTTACTCGGGGTTACACATTCAGTTTCTACTTTCCAGGTAAAAAATATTCTTCGTCTGAAATTGGACTTGTTCTTTCATGCCAGAATGACACAGCTCTTGTCAACTTGAGCTGATTATGGCATTTCTAATGTTCAAAGTCCCCCACAGCCACGCGCGTTTCTCACAGGCATTCTCTTTCATGAGAAATTATTTGAGTTAATTTAGAACACGCATTGATTGCTTTTTCGATAGTGATATACAGAAAAAGCAAGTAAATTAGATGTAAATTGGCCTCAAACTAATGGTGTGACTGTTTTAAAGATTTACTAGAAGTACAAGGACTAGGATGGAACAAGTCCCAAAATTGAGGACCAAAATGGTGTTCTAACCAAATTGGAATTTAACTACAGGCATAACCTCACTTCAAATTTGCTATTTTAGATCGATCATTTGGTTCTTTGGTTTGGTTTGATGAAATTTGCTGTGTTAGTTCACTCTTTGATCTCTTCCCTTGGTCTTTTAGAATTAGTACAAGAAAACGACAAAAATCTAACTCTATGTGTAGCAGGCCAAGTCTACCGCTAGCAGATATTGTCTCTTTAGGCTTCCCCTTCCGGGTTTCCCCTCAGGGTTTTAAAGCGCGTATACTAGGGAGAGGTTAAAGAATGTTTCGTTCCCCTCTCCATCCAATGCGGGATCTCACATTTTGACTATCTCTAGAACCGTGGTTCTGTTGAACCACATTAACTGCATTCTCTACCTATGGCACGGAAAATCAAGCAACCTTTTAAAATCACTCACTTCTTTGAAGAGTCTCAAGTTTCAGGGTCAATGGAGCCAAAGCCATTTTCCTACCATTGTTAGAAAACTTGGATTTCTAGCAAAATGAGTGAAAGAGTGTGTAGTGTGAGGCTTTTTAGTTAACATTTCTATTTCTTTCTTGTTTCTTGTTTTTTCTTATTGAATTTTGAAAATACACGAAACATGAAACGGTTGCTGTCAGAATGGAAGATTAGATATTTCTTTTGACAATGGTTACCCCAGTTTCATTTTTCAATTAAAAAACTGGTCAGCGATTTTTAGTTACTCCTGTAGAACAGTATTGTTATACCACTTGGGATGAAATTTTCAATTACCTTCTTTTTCCCTGATTTTAGAGTTGGAGTCGGGTGCTTTTACTACTAAGAATCTTTGGTGGTATACTTCTCGAGTCATCCTTTTGCCTTCTAAGTACTTGACAATGCTTTGGGATTCACCTTCCTTTGTTACTCCTACTGGAGGTCTCACTTCTGATACAAGGGACACATAAATATGAAACTCCATGTCCAAGACAAGAAGCTATGCCAAAATCATGAAAATGCTCACCATAGTTTATGATTTGCATTGTAGGACAACTATGTGATCAATTCCTTCTATTCATAATGTTAACTTTTGCAGCATTAGTGTTTGTTTTCTGTTTTTTCCCCCCTCCTTTTGCACTTTATAAGAGCTGTCATTCAATCCACTTCTGCAGGAACAAAAAGGATATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGAGCCGACGGTCATGTTCAAATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATAGGAAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCGAGCTTCTGGTATGTGCATGAATATTTATATTGTACTGTCGAATAGCGAACGATTGAGATGATGTTTATTGTGTTATTTATAGCATATAATGTATAGAAGTATTACTATGTTATATTGCAGATTGTCCATCTTCAAGTAAAAGTGTATTGATCTAGTTTTGTTTGTTTTGAATTATAAGTTTATACCTTCTGCATAATCATATACTTCTATTACTTTCTAGTTTCTTAACTTTCTTATCGTGCGAAGATCGTATCGAAGAGGAGTTTGCTGGTATATAATGTCTATAATTCACTTAATCACCTAATGTTCTGTTTTCGTGATTATGAGTAGTACTTCAATATTTGTTCAAGGGATAAAATTCTGACTTGGAGTCTCTGCATTTTTATAACGAAGTGGTTGTACAATGAATGGCATCCAAATGAAGTGATGTGAATGTCAATGCAGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCCGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGAACTTGTGATCTAATTCTCTCTTCCACTTCCATAGCTGATCCCTGCAACTGGACTTCAGGCCTGCAAAGTAACCTTTTGTTACATAATCCTGTGCATGTTTATTGTAGTACATAGAGTGAAAAACATTGTTGATACATCTGATTTCTGATTTAGTATAGTTGTTTCCATTTGGACATTCAAATTTTGTTTTGACTTGCCCTTTTCTATTCCCATTCAAATTT

mRNA sequence

CACGTCAACAACCCCTCTGTTTCTCTCTCTAAACCCCTTCGTAGATTCCGGGCTTCATTTCCCCCTGCACCACAAACAGATCAAGTCCAGGAGAACACACAAAATCTGAACCAGAGGCCATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGGGCGTATGGCCCTCGGGCGGCCCGGAGCCGGGCCGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCTTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTTGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGAACAAAAAGGATATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGAGCCGACGGTCATGTTCAAATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATAGGAAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCGAGCTTCTGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCCGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGAACTTGTGATCTAATTCTCTCTTCCACTTCCATAGCTGATCCCTGCAACTGGACTTCAGGCCTGCAAAGTAACCTTTTGTTACATAATCCTGTGCATGTTTATTGTAGTACATAGAGTGAAAAACATTGTTGATACATCTGATTTCTGATTTAGTATAGTTGTTTCCATTTGGACATTCAAATTTTGTTTTGACTTGCCCTTTTCTATTCCCATTCAAATTT

Coding sequence (CDS)

ATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGGGCGTATGGCCCTCGGGCGGCCCGGAGCCGGGCCGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCTTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTTGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGAACAAAAAGGATATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGAGCCGACGGTCATGTTCAAATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATAGGAAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCGAGCTTCTGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCCGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGA

Protein sequence

MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAAALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQEQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSLLFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS
Homology
[Close]
BLAST of Cp4.1LG05g06170 vs. TrEMBL
Match: A0A0A0KJH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139580 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 7.2e-136
Identity = 254/296 (85.81%), Postives = 271/296 (91.55%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR+ R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +L  IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL    LFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY+KLEKH  +MLIAGPALW+LGSI NSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLS LLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGR-QAAPTPYKDVLVGQT 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR +A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 296

[Close]
BLAST of Cp4.1LG05g06170 vs. TrEMBL
Match: B9SBE0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716290 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 6.3e-108
Identity = 208/298 (69.80%), Postives = 242/298 (81.21%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASAR+ R YGPR  R+RAEYINAGLY+FATI+LLGGF A  S E KSGL L+ +A 
Sbjct: 1   MVKLASARESRMYGPRLGRNRAEYINAGLYVFATIVLLGGFAALFSMEPKSGLVLMFIAL 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
            LI+ VN+HDLFAHLAGIDYRLPL+  +DVQL  VEFAVP +QA+G+LLL LG  FL +Q
Sbjct: 61  GLIMAVNLHDLFAHLAGIDYRLPLMG-FDVQLALVEFAVPIVQALGALLLFLGIFFLFLQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+K Y YYKLEKH L+MLIAGP LWILGSI NSCQIYERADGHVQILQ+SVHIPFL+GSL
Sbjct: 121 EEKRYGYYKLEKHSLNMLIAGPILWILGSIHNSCQIYERADGHVQILQESVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LF V A+LN  EQ GL HHGL+LLG++ VW+GIFG+L L +GGL NV KVFKMQQ DGLR
Sbjct: 181 LFLVGAILNIQEQDGLDHHGLQLLGRSLVWMGIFGTLLLFIGGLTNVVKVFKMQQIDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKG---RQAAPTPYKDVLVGQT 296
           LEKLRGGA ERL+ +REG++PLI E+  RRK + +E K        PTPYKDVL+GQ+
Sbjct: 241 LEKLRGGAQERLIQQREGQLPLIAEEHRRRKMIIEETKAVPVPDPVPTPYKDVLIGQS 297

[Close]
BLAST of Cp4.1LG05g06170 vs. TrEMBL
Match: F6H6F5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02650 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 4.1e-107
Identity = 203/295 (68.81%), Postives = 244/295 (82.71%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASAR+ R YG R AR+R EYINAGLY+FATI+LL GFV+QLSR+ KSGLAL+++  
Sbjct: 1   MVKLASARESRLYGTRLARNRFEYINAGLYVFATIVLLSGFVSQLSRDPKSGLALMMIGL 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
            L+ +VNVHDL AH+AGIDYRL L+ ++D+QL  VEF+VPF+QA+G LL  LG LFL +Q
Sbjct: 61  GLLFVVNVHDLVAHMAGIDYRLGLM-EFDLQLGLVEFSVPFVQAMGYLLSFLGILFLFLQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KGY Y+KLE+H L+MLIAGP LW+LGSI NSCQIYERADGH+QILQQSVHIPFL+GSL
Sbjct: 121 EEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LF V +++N  EQA L HHG++LLG  WVWLG+FGSL   +GGL NV KVFKMQQ DGLR
Sbjct: 181 LFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 296
           LEKLRGGA ERL+ EREG+IPLILEDQ RR+++  EE      PTPY+DVLVG +
Sbjct: 241 LEKLRGGAQERLIHEREGQIPLILEDQ-RRRKIHVEETMPVVVPTPYRDVLVGHS 293

[Close]
BLAST of Cp4.1LG05g06170 vs. TrEMBL
Match: W9R5I3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011453 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 5.4e-107
Identity = 206/296 (69.59%), Postives = 241/296 (81.42%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARD R YGPR +R+R EYINAGLYLFAT++LLGGFVA  SREAKS L ++++A 
Sbjct: 1   MVKLASARDARVYGPRGSRNRGEYINAGLYLFATVVLLGGFVALFSREAKSSLVVLMMAL 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
            LIL  NVHDL AHLA  DYRL L+ +YD+QL+ VEFAVP LQA+GSLL  LG LFL IQ
Sbjct: 61  LLILAANVHDLVAHLAAYDYRLGLM-EYDLQLVLVEFAVPLLQALGSLLSFLGILFLFIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KGY Y KLEKH L+MLIAGP LW++GSI NSCQIYERAD H+QILQQSVHIPFL+ S+
Sbjct: 121 EEKGYGYSKLEKHTLNMLIAGPVLWLIGSIYNSCQIYERADSHLQILQQSVHIPFLMASV 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LF  AA+LN  EQAG+ HHGLEL+G  W+WLGIFGSL L+ GG  NV KVFKMQQ DGLR
Sbjct: 181 LFMTAAILNRREQAGVDHHGLELVGMTWIWLGIFGSLCLVFGGFMNVVKVFKMQQVDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEE-KGRQAAPTPYKDVLVGQT 296
           LEKLRGGA ERL+  REG+IP +LE+  RR++ ++EE K   A+ TPYKDVLVGQ+
Sbjct: 241 LEKLRGGAPERLIQAREGQIPFLLENHRRRRQSAEEEVKVLPASTTPYKDVLVGQS 295

[Close]
BLAST of Cp4.1LG05g06170 vs. TrEMBL
Match: A5ALP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 1.0e-105
Identity = 201/291 (69.07%), Postives = 241/291 (82.82%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASAR+ R YG R AR+R EYINAGLY+FATI+LL GFV+QLSR+ KSGLAL+++  
Sbjct: 1   MVKLASARESRLYGTRLARNRFEYINAGLYVFATIVLLSGFVSQLSRDPKSGLALMMIGL 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
            L+ +VNVHDL AH+AGIDYRL L+ ++D+QL  VEF+VPF+QA+G LL  LG LFL +Q
Sbjct: 61  GLLFVVNVHDLVAHMAGIDYRLGLM-EFDLQLGLVEFSVPFVQAMGYLLSFLGILFLFLQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KGY Y+KLE+H L+MLIAGP LW+LGSI NSCQIYERADGH+QILQQSVHIPFL+GSL
Sbjct: 121 EEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LF V +++N  EQA L HHG++LLG  WVWLG+FGSL   +GGL NV KVFKMQQ DGLR
Sbjct: 181 LFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVL 292
           LEKLRGGA ERL+ EREG+IPLILEDQ RR+++  EE      PTPY+DVL
Sbjct: 241 LEKLRGGAQERLIHEREGQIPLILEDQ-RRRKIHVEEXMPVVVPTPYRDVL 289

[Close]
BLAST of Cp4.1LG05g06170 vs. TAIR10
Match: AT5G24130.1 (AT5G24130.1 unknown protein)

HSP 1 Score: 328.9 bits (842), Expect = 3.1e-90
Identity = 182/316 (57.59%), Postives = 221/316 (69.94%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQ-LSREAKSGLALIVLA 60
           MVKLA+AR+ R YGPR  RSRAEYINAGLYLFAT++L+GGF A   S E +SGL LI+LA
Sbjct: 1   MVKLATAREIRTYGPRLGRSRAEYINAGLYLFATVVLIGGFTATGFSWEPRSGLVLILLA 60

Query: 61  AALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLI 120
             LI  VNVHDL AHLAGIDYRL L+ +YD+QL  VEFAVP +Q  GS++  LG  F+  
Sbjct: 61  LVLITAVNVHDLVAHLAGIDYRLRLM-EYDLQLGLVEFAVPLVQIAGSVVFFLGIFFVFH 120

Query: 121 QEQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGS 180
           Q +    Y   E H L++LIAGP LW++GSI NSCQIYERAD HVQILQQ V+IPFL+GS
Sbjct: 121 QAETKRGYSGREHHALNLLIAGPLLWLIGSIHNSCQIYERADSHVQILQQCVYIPFLVGS 180

Query: 181 LLFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGL 240
           LLF V+AVLN  + +G +  GL+LLG+ W+WLGI G++ L +GGL NV KVF   Q  GL
Sbjct: 181 LLFLVSAVLNSLDISGSSRSGLKLLGERWIWLGISGAICLFVGGLLNVVKVFNFVQISGL 240

Query: 241 RLEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQA----------------- 295
           RLEKLRGGA +RLL  REG +PL+ E++  RK  +D E   +A                 
Sbjct: 241 RLEKLRGGAQDRLLEGREGYLPLVAEEERIRKMEADHEASSRAKPRAHTTSKAGEGATET 300

[Close]
BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: gi|659074392|ref|XP_008437579.1| (PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [Cucumis melo])

HSP 1 Score: 498.0 bits (1281), Expect = 1.1e-137
Identity = 257/295 (87.12%), Postives = 273/295 (92.54%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGID+RLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]
BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: gi|778698926|ref|XP_011654624.1| (PREDICTED: uncharacterized protein LOC105435425 [Cucumis sativus])

HSP 1 Score: 491.5 bits (1264), Expect = 1.0e-135
Identity = 254/296 (85.81%), Postives = 271/296 (91.55%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDFR YGPR+ R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +L  IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL    LFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KG+DY+KLEKH  +MLIAGPALW+LGSI NSCQIYERAD HVQILQQSVHIPFLIGSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGL+LLGKNW+WLGIFGSLS LLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGR-QAAPTPYKDVLVGQT 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR +A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 296

[Close]
BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: gi|255564629|ref|XP_002523309.1| (PREDICTED: uncharacterized protein LOC8263485 [Ricinus communis])

HSP 1 Score: 398.7 bits (1023), Expect = 9.1e-108
Identity = 208/298 (69.80%), Postives = 242/298 (81.21%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASAR+ R YGPR  R+RAEYINAGLY+FATI+LLGGF A  S E KSGL L+ +A 
Sbjct: 1   MVKLASARESRMYGPRLGRNRAEYINAGLYVFATIVLLGGFAALFSMEPKSGLVLMFIAL 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
            LI+ VN+HDLFAHLAGIDYRLPL+  +DVQL  VEFAVP +QA+G+LLL LG  FL +Q
Sbjct: 61  GLIMAVNLHDLFAHLAGIDYRLPLMG-FDVQLALVEFAVPIVQALGALLLFLGIFFLFLQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+K Y YYKLEKH L+MLIAGP LWILGSI NSCQIYERADGHVQILQ+SVHIPFL+GSL
Sbjct: 121 EEKRYGYYKLEKHSLNMLIAGPILWILGSIHNSCQIYERADGHVQILQESVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LF V A+LN  EQ GL HHGL+LLG++ VW+GIFG+L L +GGL NV KVFKMQQ DGLR
Sbjct: 181 LFLVGAILNIQEQDGLDHHGLQLLGRSLVWMGIFGTLLLFIGGLTNVVKVFKMQQIDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKG---RQAAPTPYKDVLVGQT 296
           LEKLRGGA ERL+ +REG++PLI E+  RRK + +E K        PTPYKDVL+GQ+
Sbjct: 241 LEKLRGGAQERLIQQREGQLPLIAEEHRRRKMIIEETKAVPVPDPVPTPYKDVLIGQS 297

[Close]
BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: gi|1009122785|ref|XP_015878189.1| (PREDICTED: uncharacterized protein LOC107414567 [Ziziphus jujuba])

HSP 1 Score: 398.7 bits (1023), Expect = 9.1e-108
Identity = 204/297 (68.69%), Postives = 244/297 (82.15%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASAR+ R YGPR +R+R EY+NAGLY+FAT++LLGGFVA+LS+E KSGL L+++A 
Sbjct: 1   MVKLASAREVRMYGPRLSRNRTEYMNAGLYVFATVVLLGGFVAELSKEPKSGLVLLMIAL 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
            +I++VN+HDL AHLAGIDYRL L+ ++D+QL  VEFAVP LQA+GSLL  LG LFL IQ
Sbjct: 61  VVIMMVNLHDLLAHLAGIDYRLTLM-EFDIQLALVEFAVPLLQALGSLLFFLGVLFLFIQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E KG    KLEKH L+MLIAGP LW++GSI NSCQIYERADGHVQILQQ VHIPFL GS+
Sbjct: 121 EYKGRVQSKLEKHALNMLIAGPVLWVVGSIHNSCQIYERADGHVQILQQGVHIPFLTGSV 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LF V A+LN  EQAGL HHGL+LLGK W+W+GIFGSL  ++GG  NV KVFKMQQ D LR
Sbjct: 181 LFLVGAILNAHEQAGLNHHGLQLLGKCWIWVGIFGSLLFVIGGFMNVVKVFKMQQVDDLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKR--LSDEEKGRQAAPTPYKDVLVGQT 296
           LEKLRGGA+ERL+ ER+G++PLILEDQ R K+   ++E K     PTPYKDVL+GQT
Sbjct: 241 LEKLRGGAHERLINERDGQVPLILEDQRRIKKHIAAEEPKVALPLPTPYKDVLIGQT 296

[Close]
BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match: gi|225462749|ref|XP_002268340.1| (PREDICTED: uncharacterized protein LOC100244979 [Vitis vinifera])

HSP 1 Score: 396.0 bits (1016), Expect = 5.9e-107
Identity = 203/295 (68.81%), Postives = 244/295 (82.71%), Query Frame = 1 

Query: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASAR+ R YG R AR+R EYINAGLY+FATI+LL GFV+QLSR+ KSGLAL+++  
Sbjct: 1   MVKLASARESRLYGTRLARNRFEYINAGLYVFATIVLLSGFVSQLSRDPKSGLALMMIGL 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
            L+ +VNVHDL AH+AGIDYRL L+ ++D+QL  VEF+VPF+QA+G LL  LG LFL +Q
Sbjct: 61  GLLFVVNVHDLVAHMAGIDYRLGLM-EFDLQLGLVEFSVPFVQAMGYLLSFLGILFLFLQ 120

Query: 121 EQKGYDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180
           E+KGY Y+KLE+H L+MLIAGP LW+LGSI NSCQIYERADGH+QILQQSVHIPFL+GSL
Sbjct: 121 EEKGYGYFKLERHALNMLIAGPVLWVLGSIHNSCQIYERADGHIQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLELLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LF V +++N  EQA L HHG++LLG  WVWLG+FGSL   +GGL NV KVFKMQQ DGLR
Sbjct: 181 LFMVGSIINCHEQARLVHHGIDLLGMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 296
           LEKLRGGA ERL+ EREG+IPLILEDQ RR+++  EE      PTPY+DVLVG +
Sbjct: 241 LEKLRGGAQERLIHEREGQIPLILEDQ-RRRKIHVEETMPVVVPTPYRDVLVGHS 293

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g06170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g06170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJH6_CUCSA7.2e-13685.81Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139580 PE=4 SV=1[more]
B9SBE0_RICCO6.3e-10869.80Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716290 PE=4 SV=1[more]
F6H6F5_VITVI4.1e-10768.81Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02650 PE=4 SV=... [more]
W9R5I3_9ROSA5.4e-10769.59Uncharacterized protein OS=Morus notabilis GN=L484_011453 PE=4 SV=1[more]
A5ALP2_VITVI1.0e-10569.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1[more]
BLAST of Cp4.1LG05g06170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24130.13.1e-9057.59 unknown protein[more]
BLAST of Cp4.1LG05g06170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074392|ref|XP_008437579.1|1.1e-13787.12PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [... [more]
gi|778698926|ref|XP_011654624.1|1.0e-13585.81PREDICTED: uncharacterized protein LOC105435425 [Cucumis sativus][more]
gi|255564629|ref|XP_002523309.1|9.1e-10869.80PREDICTED: uncharacterized protein LOC8263485 [Ricinus communis][more]
gi|1009122785|ref|XP_015878189.1|9.1e-10868.69PREDICTED: uncharacterized protein LOC107414567 [Ziziphus jujuba][more]
gi|225462749|ref|XP_002268340.1|5.9e-10768.81PREDICTED: uncharacterized protein LOC100244979 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g06170.1Cp4.1LG05g06170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34967FAMILY NOT NAMEDcoord: 2..295
score: 8.0E
NoneNo IPR availablePANTHERPTHR34967:SF1SUBFAMILY NOT NAMEDcoord: 2..295
score: 8.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g06170Cucsa.202000Cucumber (Gy14) v1cgycpeB0576
Cp4.1LG05g06170CmoCh02G011310Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g06170Cla004907Watermelon (97103) v1cpewmB708
Cp4.1LG05g06170Csa5G139580Cucumber (Chinese Long) v2cpecuB730
Cp4.1LG05g06170MELO3C005871Melon (DHL92) v3.5.1cpemeB651
Cp4.1LG05g06170ClCG01G000560Watermelon (Charleston Gray)cpewcgB635
Cp4.1LG05g06170CSPI05G03330Wild cucumber (PI 183967)cpecpiB733
Cp4.1LG05g06170Lsi09G000370Bottle gourd (USVL1VR-Ls)cpelsiB579
Cp4.1LG05g06170CsaV3_5G000660Cucumber (Chinese Long) v3cpecucB0910
Cp4.1LG05g06170Bhi12G000543Wax gourdcpewgoB0916
Cp4.1LG05g06170Carg14028Silver-seed gourdcarcpeB0718
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g06170Wax gourdcpewgoB0928
Cp4.1LG05g06170Cucurbita pepo (Zucchini)cpecpeB057
Cp4.1LG05g06170Cucurbita pepo (Zucchini)cpecpeB227
Cp4.1LG05g06170Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG05g06170Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG05g06170Cucumber (Gy14) v1cgycpeB0685
Cp4.1LG05g06170Cucurbita maxima (Rimu)cmacpeB291
Cp4.1LG05g06170Cucurbita maxima (Rimu)cmacpeB330
Cp4.1LG05g06170Cucurbita maxima (Rimu)cmacpeB358
Cp4.1LG05g06170Cucurbita maxima (Rimu)cmacpeB453
Cp4.1LG05g06170Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g06170Cucurbita moschata (Rifu)cmocpeB293
Cp4.1LG05g06170Cucurbita moschata (Rifu)cmocpeB322
Cp4.1LG05g06170Cucurbita moschata (Rifu)cmocpeB414
Cp4.1LG05g06170Wild cucumber (PI 183967)cpecpiB722
Cp4.1LG05g06170Cucumber (Chinese Long) v2cpecuB720
Cp4.1LG05g06170Bottle gourd (USVL1VR-Ls)cpelsiB626
Cp4.1LG05g06170Watermelon (Charleston Gray)cpewcgB677
Cp4.1LG05g06170Watermelon (Charleston Gray)cpewcgB678
Cp4.1LG05g06170Watermelon (97103) v1cpewmB704
Cp4.1LG05g06170Watermelon (97103) v1cpewmB705
Cp4.1LG05g06170Melon (DHL92) v3.5.1cpemeB698
Cp4.1LG05g06170Melon (DHL92) v3.5.1cpemeB701
Cp4.1LG05g06170Cucumber (Gy14) v2cgybcpeB428
Cp4.1LG05g06170Cucumber (Gy14) v2cgybcpeB686
Cp4.1LG05g06170Melon (DHL92) v3.6.1cpemedB779
Cp4.1LG05g06170Melon (DHL92) v3.6.1cpemedB832
Cp4.1LG05g06170Melon (DHL92) v3.6.1cpemedB835
Cp4.1LG05g06170Silver-seed gourdcarcpeB0418
Cp4.1LG05g06170Silver-seed gourdcarcpeB0765
Cp4.1LG05g06170Silver-seed gourdcarcpeB1377