Lsi09G000270 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G000270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 264850 .. 265185 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

mRNA sequence

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

Coding sequence (CDS)

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

Protein sequence

MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF
Homology
[Close]
BLAST of Lsi09G000270 vs. Swiss-Prot
Match: SDHF4_DROME (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster GN=Sirup PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1 

Query: 81  TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           TN    E+GGP GPEPTRYGDWERKGR  DF
Sbjct: 88  TNPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

[Close]
BLAST of Lsi09G000270 vs. TrEMBL
Match: A0A0A0KQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139490 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-37
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 1 

Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG 
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYGDWERKGRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]
BLAST of Lsi09G000270 vs. TrEMBL
Match: I3S0H7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 4   YLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLN 63
           +LS + +   T +    ++R  SNS++RF+ SSS QQ + +     ++E RE+    S  
Sbjct: 8   WLSSVANPALTRTGSEQLTRSVSNSVTRFLCSSSTQQHTENPVTEQAQEPRESLPDESKQ 67

Query: 64  QHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             E   +E + +D++VD N+   EVGGPKGPEPTRYGDWER GRC DF
Sbjct: 68  TREGEEEEGEDDDDDVDVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 115

[Close]
BLAST of Lsi09G000270 vs. TrEMBL
Match: A0A103YDI6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014540 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-11
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1 

Query: 3   SYLSRLFSSPPTLSALPAV------SRLTSNSLSRFVSS-SSNQQPSPSEQGVSSEEHRE 62
           S L RL S+PPT  + PA+      S  T NS +RF+SS + N Q    + G ++EE + 
Sbjct: 4   SNLHRLLSTPPTAISRPAIIFSAFRSEFT-NSTNRFISSVTENLQTHQDQDGATNEEDKT 63

Query: 63  AEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
            +  G    H    DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 64  QKAQG----HGEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 112

[Close]
BLAST of Lsi09G000270 vs. TrEMBL
Match: A0A124SGP8_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_014542 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 1 

Query: 3   SYLSRLFSSPPTLSALPAVSRLT----------SNSLSRFVSS-SSNQQPSPSEQGVSSE 62
           S L RL S+PPT     A+SR T          +NS +RF+SS + N Q      G ++E
Sbjct: 39  SNLHRLLSTPPT-----AISRSTIIFSAFRSEFTNSTNRFISSVTENLQTHQDHDGATNE 98

Query: 63  EHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           E +  +  G    HE   DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 99  EDKVQKAQG----HEEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 147

[Close]
BLAST of Lsi09G000270 vs. TrEMBL
Match: A0A061G1Q2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015376 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1 

Query: 5   LSRLFSS-------PPTLSALPA--VSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHRE 64
           LSRLFSS        P+LS++ +  ++R  SNS SRF+  S+ QQP  + Q  ++EE RE
Sbjct: 6   LSRLFSSISELSIPKPSLSSVRSEPMTRFGSNSASRFLCCSA-QQPQLNHQEKANEEKRE 65

Query: 65  AEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           A K     + E   +E D +++    N+   EVGGP+GPEPTRYGDWER GRCYDF
Sbjct: 66  AVKEDP--EIENKENEEDDDEDGDHVNKQTGEVGGPRGPEPTRYGDWERNGRCYDF 118

[Close]
BLAST of Lsi09G000270 vs. TAIR10
Match: AT5G67490.1 (AT5G67490.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 1 

Query: 20  AVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEV 79
           +VS      +SRF+SS +   P P     + + +R+ +   +L Q+     E + E E  
Sbjct: 15  SVSSRFLEPVSRFLSSGT--PPPPQAPSPNQDLNRDVKPDQNLQQNLQMQKEEEEEGEGG 74

Query: 80  D----TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
                 NE   E+GGP+GPEPTRYGDWE++GRC DF
Sbjct: 75  GGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108

[Close]
BLAST of Lsi09G000270 vs. NCBI nr
Match: gi|659074410|ref|XP_008437589.1| (PREDICTED: UPF0369 protein C6orf57 homolog [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 4.1e-37
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 1 

Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS+LSRLFSSPPTLSALP V RLTSNSLSRFVSSSSNQQPS SEQ VSSEE REAEKG 
Sbjct: 1   MSSHLSRLFSSPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQVVSSEEQREAEKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S NQHEAAGD+R  +D+ VDT +   E+GGPKG EPTRYGDWER GRCYDF
Sbjct: 61  SPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

[Close]
BLAST of Lsi09G000270 vs. NCBI nr
Match: gi|778708202|ref|XP_011656145.1| (PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 5.4e-37
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 1 

Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG 
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYGDWERKGRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]
BLAST of Lsi09G000270 vs. NCBI nr
Match: gi|388491406|gb|AFK33769.1| (unknown [Lotus japonicus])

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 4   YLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLN 63
           +LS + +   T +    ++R  SNS++RF+ SSS QQ + +     ++E RE+    S  
Sbjct: 8   WLSSVANPALTRTGSEQLTRSVSNSVTRFLCSSSTQQHTENPVTEQAQEPRESLPDESKQ 67

Query: 64  QHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             E   +E + +D++VD N+   EVGGPKGPEPTRYGDWER GRC DF
Sbjct: 68  TREGEEEEGEDDDDDVDVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 115

[Close]
BLAST of Lsi09G000270 vs. NCBI nr
Match: gi|976922734|gb|KVI07099.1| (Protein of unknown function DUF1674 [Cynara cardunculus var. scolymus])

HSP 1 Score: 75.1 bits (183), Expect = 8.6e-11
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1 

Query: 3   SYLSRLFSSPPTLSALPAV------SRLTSNSLSRFVSS-SSNQQPSPSEQGVSSEEHRE 62
           S L RL S+PPT  + PA+      S  T NS +RF+SS + N Q    + G ++EE + 
Sbjct: 4   SNLHRLLSTPPTAISRPAIIFSAFRSEFT-NSTNRFISSVTENLQTHQDQDGATNEEDKT 63

Query: 63  AEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
            +  G    H    DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 64  QKAQG----HGEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 112

[Close]
BLAST of Lsi09G000270 vs. NCBI nr
Match: gi|976922728|gb|KVI07093.1| (Protein of unknown function DUF1674, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 1 

Query: 3   SYLSRLFSSPPTLSALPAVSRLT----------SNSLSRFVSS-SSNQQPSPSEQGVSSE 62
           S L RL S+PPT     A+SR T          +NS +RF+SS + N Q      G ++E
Sbjct: 39  SNLHRLLSTPPT-----AISRSTIIFSAFRSEFTNSTNRFISSVTENLQTHQDHDGATNE 98

Query: 63  EHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           E +  +  G    HE   DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 99  EDKVQKAQG----HEEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 147

The following BLAST results are available for this feature:
BLAST of Lsi09G000270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDHF4_DROME1.3e-0674.19Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas... [more]
BLAST of Lsi09G000270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ66_CUCSA3.7e-3781.08Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139490 PE=4 SV=1[more]
I3S0H7_LOTJA2.1e-1143.52Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A103YDI6_CYNCS6.0e-1146.55Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014540 PE=4 ... [more]
A0A124SGP8_CYNCS1.0e-1045.83Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
A0A061G1Q2_THECC1.3e-1047.41Uncharacterized protein OS=Theobroma cacao GN=TCM_015376 PE=4 SV=1[more]
BLAST of Lsi09G000270 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67490.12.8e-0738.54 unknown protein[more]
BLAST of Lsi09G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074410|ref|XP_008437589.1|4.1e-3780.18PREDICTED: UPF0369 protein C6orf57 homolog [Cucumis melo][more]
gi|778708202|ref|XP_011656145.1|5.4e-3781.08PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sat... [more]
gi|388491406|gb|AFK33769.1|3.0e-1143.52unknown [Lotus japonicus][more]
gi|976922734|gb|KVI07099.1|8.6e-1146.55Protein of unknown function DUF1674 [Cynara cardunculus var. scolymus][more]
gi|976922728|gb|KVI07093.1|1.5e-1045.83Protein of unknown function DUF1674, partial [Cynara cardunculus var. scolymus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012875DUF1674
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G000270.1Lsi09G000270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012875Protein of unknown function DUF1674PFAMPF07896DUF1674coord: 61..111
score: 1.2
NoneNo IPR availablePANTHERPTHR28524FAMILY NOT NAMEDcoord: 14..111
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G000270Csa5G139490Cucumber (Chinese Long) v2culsiB322
Lsi09G000270CSPI05G03230Wild cucumber (PI 183967)cpilsiB322
Lsi09G000270Cucsa.202070Cucumber (Gy14) v1cgylsiB347
Lsi09G000270CmaCh02G011110Cucurbita maxima (Rimu)cmalsiB536
Lsi09G000270CmoCh02G011390Cucurbita moschata (Rifu)cmolsiB520
Lsi09G000270Cla004900Watermelon (97103) v1lsiwmB027
Lsi09G000270MELO3C005879Melon (DHL92) v3.5.1lsimeB012
Lsi09G000270ClCG01G000490Watermelon (Charleston Gray)lsiwcgB008
Lsi09G000270MELO3C005879.2Melon (DHL92) v3.6.1lsimedB012
Lsi09G000270Cla97C01G000530Watermelon (97103) v2lsiwmbB007
Lsi09G000270Bhi12G000553Wax gourdlsiwgoB024
Lsi09G000270Cp4.1LG05g05980Cucurbita pepo (Zucchini)cpelsiB579
Lsi09G000270CsGy5G000500Cucumber (Gy14) v2cgyblsiB294
Lsi09G000270Carg14020Silver-seed gourdcarlsiB457
Lsi09G000270CsaV3_5G000570Cucumber (Chinese Long) v3cuclsiB345
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G000270Silver-seed gourdcarlsiB276
Lsi09G000270Silver-seed gourdcarlsiB487
Lsi09G000270Silver-seed gourdcarlsiB902
Lsi09G000270Cucumber (Chinese Long) v3cuclsiB164
Lsi09G000270Watermelon (97103) v2lsiwmbB019
Lsi09G000270Wax gourdlsiwgoB045
Lsi09G000270Bottle gourd (USVL1VR-Ls)lsilsiB013
Lsi09G000270Bottle gourd (USVL1VR-Ls)lsilsiB014
Lsi09G000270Cucumber (Gy14) v1cgylsiB413
Lsi09G000270Cucurbita maxima (Rimu)cmalsiB226
Lsi09G000270Cucurbita maxima (Rimu)cmalsiB262
Lsi09G000270Cucurbita maxima (Rimu)cmalsiB298
Lsi09G000270Cucurbita maxima (Rimu)cmalsiB363
Lsi09G000270Cucurbita moschata (Rifu)cmolsiB214
Lsi09G000270Cucurbita moschata (Rifu)cmolsiB249
Lsi09G000270Cucurbita moschata (Rifu)cmolsiB286
Lsi09G000270Cucurbita moschata (Rifu)cmolsiB351
Lsi09G000270Cucurbita pepo (Zucchini)cpelsiB019
Lsi09G000270Cucurbita pepo (Zucchini)cpelsiB163
Lsi09G000270Cucurbita pepo (Zucchini)cpelsiB134
Lsi09G000270Cucurbita pepo (Zucchini)cpelsiB486
Lsi09G000270Wild cucumber (PI 183967)cpilsiB150
Lsi09G000270Cucumber (Chinese Long) v2culsiB151
Lsi09G000270Melon (DHL92) v3.5.1lsimeB031
Lsi09G000270Melon (DHL92) v3.5.1lsimeB035
Lsi09G000270Watermelon (Charleston Gray)lsiwcgB018
Lsi09G000270Watermelon (Charleston Gray)lsiwcgB021
Lsi09G000270Watermelon (97103) v1lsiwmB018
Lsi09G000270Watermelon (97103) v1lsiwmB023
Lsi09G000270Cucumber (Gy14) v2cgyblsiB137
Lsi09G000270Melon (DHL92) v3.6.1lsimedB033
Lsi09G000270Melon (DHL92) v3.6.1lsimedB038