Lsi09G000270.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G000270.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr09 : 264850 .. 265185 (+)
Sequence length	336

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

mRNA sequence

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

Coding sequence (CDS)

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

Protein sequence

MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF

Homology

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BLAST of Lsi09G000270.1 vs. Swiss-Prot
Match: SDHF4_DROME (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster GN=Sirup PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 81  TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           TN    E+GGP GPEPTRYGDWERKGR  DF
Sbjct: 88  TNPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

[Close]

BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A0A0KQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139490 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-37
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 1


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG 
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYGDWERKGRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]

BLAST of Lsi09G000270.1 vs. TrEMBL
Match: I3S0H7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 4   YLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLN 63
           +LS + +   T +    ++R  SNS++RF+ SSS QQ + +     ++E RE+    S  
Sbjct: 8   WLSSVANPALTRTGSEQLTRSVSNSVTRFLCSSSTQQHTENPVTEQAQEPRESLPDESKQ 67

Query: 64  QHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             E   +E + +D++VD N+   EVGGPKGPEPTRYGDWER GRC DF
Sbjct: 68  TREGEEEEGEDDDDDVDVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 115

[Close]

BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A103YDI6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014540 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-11
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 3   SYLSRLFSSPPTLSALPAV------SRLTSNSLSRFVSS-SSNQQPSPSEQGVSSEEHRE 62
           S L RL S+PPT  + PA+      S  T NS +RF+SS + N Q    + G ++EE + 
Sbjct: 4   SNLHRLLSTPPTAISRPAIIFSAFRSEFT-NSTNRFISSVTENLQTHQDQDGATNEEDKT 63

Query: 63  AEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
            +  G    H    DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 64  QKAQG----HGEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 112

[Close]

BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A124SGP8_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_014542 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 1


Query: 3   SYLSRLFSSPPTLSALPAVSRLT----------SNSLSRFVSS-SSNQQPSPSEQGVSSE 62
           S L RL S+PPT     A+SR T          +NS +RF+SS + N Q      G ++E
Sbjct: 39  SNLHRLLSTPPT-----AISRSTIIFSAFRSEFTNSTNRFISSVTENLQTHQDHDGATNE 98

Query: 63  EHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           E +  +  G    HE   DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 99  EDKVQKAQG----HEEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 147

[Close]

BLAST of Lsi09G000270.1 vs. TrEMBL
Match: A0A061G1Q2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015376 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 5   LSRLFSS-------PPTLSALPA--VSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHRE 64
           LSRLFSS        P+LS++ +  ++R  SNS SRF+  S+ QQP  + Q  ++EE RE
Sbjct: 6   LSRLFSSISELSIPKPSLSSVRSEPMTRFGSNSASRFLCCSA-QQPQLNHQEKANEEKRE 65

Query: 65  AEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           A K     + E   +E D +++    N+   EVGGP+GPEPTRYGDWER GRCYDF
Sbjct: 66  AVKEDP--EIENKENEEDDDEDGDHVNKQTGEVGGPRGPEPTRYGDWERNGRCYDF 118

[Close]

BLAST of Lsi09G000270.1 vs. TAIR10
Match: AT5G67490.1 (AT5G67490.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 20  AVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEV 79
           +VS      +SRF+SS +   P P     + + +R+ +   +L Q+     E + E E  
Sbjct: 15  SVSSRFLEPVSRFLSSGT--PPPPQAPSPNQDLNRDVKPDQNLQQNLQMQKEEEEEGEGG 74

Query: 80  D----TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
                 NE   E+GGP+GPEPTRYGDWE++GRC DF
Sbjct: 75  GGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108

[Close]

BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|659074410|ref|XP_008437589.1| (PREDICTED: UPF0369 protein C6orf57 homolog [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 4.1e-37
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 1


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS+LSRLFSSPPTLSALP V RLTSNSLSRFVSSSSNQQPS SEQ VSSEE REAEKG 
Sbjct: 1   MSSHLSRLFSSPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQVVSSEEQREAEKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S NQHEAAGD+R  +D+ VDT +   E+GGPKG EPTRYGDWER GRCYDF
Sbjct: 61  SPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

[Close]

BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|778708202|ref|XP_011656145.1| (PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 5.4e-37
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 1


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG 
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYGDWERKGRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]

BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|388491406|gb|AFK33769.1| (unknown [Lotus japonicus])

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 4   YLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLN 63
           +LS + +   T +    ++R  SNS++RF+ SSS QQ + +     ++E RE+    S  
Sbjct: 8   WLSSVANPALTRTGSEQLTRSVSNSVTRFLCSSSTQQHTENPVTEQAQEPRESLPDESKQ 67

Query: 64  QHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             E   +E + +D++VD N+   EVGGPKGPEPTRYGDWER GRC DF
Sbjct: 68  TREGEEEEGEDDDDDVDVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 115

[Close]

BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|976922734|gb|KVI07099.1| (Protein of unknown function DUF1674 [Cynara cardunculus var. scolymus])

HSP 1 Score: 75.1 bits (183), Expect = 8.6e-11
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 3   SYLSRLFSSPPTLSALPAV------SRLTSNSLSRFVSS-SSNQQPSPSEQGVSSEEHRE 62
           S L RL S+PPT  + PA+      S  T NS +RF+SS + N Q    + G ++EE + 
Sbjct: 4   SNLHRLLSTPPTAISRPAIIFSAFRSEFT-NSTNRFISSVTENLQTHQDQDGATNEEDKT 63

Query: 63  AEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
            +  G    H    DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 64  QKAQG----HGEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 112

[Close]

BLAST of Lsi09G000270.1 vs. NCBI nr
Match: gi|976922728|gb|KVI07093.1| (Protein of unknown function DUF1674, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 1


Query: 3   SYLSRLFSSPPTLSALPAVSRLT----------SNSLSRFVSS-SSNQQPSPSEQGVSSE 62
           S L RL S+PPT     A+SR T          +NS +RF+SS + N Q      G ++E
Sbjct: 39  SNLHRLLSTPPT-----AISRSTIIFSAFRSEFTNSTNRFISSVTENLQTHQDHDGATNE 98

Query: 63  EHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           E +  +  G    HE   DE DGE  E+D N+   E GGP+GPEPTRYGDWER GRC DF
Sbjct: 99  EDKVQKAQG----HEEENDEDDGE--ELDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 147

The following BLAST results are available for this feature:

BLAST of Lsi09G000270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDHF4_DROME	1.3e-06	74.19	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas...	[more]

BLAST of Lsi09G000270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ66_CUCSA	3.7e-37	81.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139490 PE=4 SV=1	[more]
I3S0H7_LOTJA	2.1e-11	43.52	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A103YDI6_CYNCS	6.0e-11	46.55	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014540 PE=4 ...	[more]
A0A124SGP8_CYNCS	1.0e-10	45.83	Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0...	[more]
A0A061G1Q2_THECC	1.3e-10	47.41	Uncharacterized protein OS=Theobroma cacao GN=TCM_015376 PE=4 SV=1	[more]

BLAST of Lsi09G000270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67490.1	2.8e-07	38.54	unknown protein	[more]

BLAST of Lsi09G000270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074410\|ref\|XP_008437589.1\|	4.1e-37	80.18	PREDICTED: UPF0369 protein C6orf57 homolog [Cucumis melo]	[more]
gi\|778708202\|ref\|XP_011656145.1\|	5.4e-37	81.08	PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sat...	[more]
gi\|388491406\|gb\|AFK33769.1\|	3.0e-11	43.52	unknown [Lotus japonicus]	[more]
gi\|976922734\|gb\|KVI07099.1\|	8.6e-11	46.55	Protein of unknown function DUF1674 [Cynara cardunculus var. scolymus]	[more]
gi\|976922728\|gb\|KVI07093.1\|	1.5e-10	45.83	Protein of unknown function DUF1674, partial [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012875	DUF1674

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi09G000270	Lsi09G000270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G000270.1.CDS.1	Lsi09G000270.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi09G000270.1	Lsi09G000270.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012875	Protein of unknown function DUF1674	PFAM	PF07896	DUF1674	coord: 61..111 score: 1.2
None	No IPR available	PANTHER	PTHR28524	FAMILY NOT NAMED	coord: 14..111 score: 1.9