CsaV3_5G000570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G000570
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSuccinate dehydrogenase assembly factor 4 like
Locationchr5 : 282927 .. 284633 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAGACTATGATACTATCTTTATTAATTATTTAAATAATTTTATTAAATATTAAATTTAATTACATTAATTTCACATAAAATTATTAAAAACTTCTTAGTAAGAAGCAATAAATAAAATAAATAGGGGTACTAATTACTATGAAGAAAAATTAAGAAGGGCGGTATAACATTAATGACACGTGGTGGGTGGTTTGCTCAAACGACGTCGTATTGAGGAAGTATAAATACCAATTTTCGTCACCTACCAACCGCCGGGAGTTCGCGGATCCGATTGAGTAAACAAAGTATGTCGAGCAATCTCAGCCGCCTGTTCTCGTCACCGCCGACTCTCTCAGCCCTGCCGGCGGTGAGTCGCCTAACTTTCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAATCAACAGCCTTCTCGATTGGAGAAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTCGCCGAATCGACACGAGGCTGCTGGAGATGACCGAGGTGGTCAAGATGAAGGAGTTGATACGGAAAAAATGACTCGCGAGATCGGTGGACCAAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTCCGATTTTTGACATTTCGAGGTTAGATTGTGAACGAGATCTTAGGATGATATGATTTCTGTAACTCAATTTCGTGAGCTTTGTTTTCCTTAATCTGAGTTTTCGTTTTTCTGGAAATTCATTTCCAGAACTGTATGCGTTTCTTTGAGACCGAAGGGAAATTAGAATAATATTATTCATCGTTTCAATAGTACTTGATTCTGGTAATCTTTTTGCATTACGCTTTTGTTTAGTCAGGATGTATTAAGTTCTGTATGAACTTTGAATTTGTATAGCTTGTTGAACAAAATTTCCGAGAAATTAGAGGAAGGAGATTAGTTTATTAGGATGGTTCAAATCTGCTTGAACTTTTCTTATCAAATTGTCCACATAAAATATTTTGATATAGGTTATAGAAGCAATGATCTTTGGAATCTATTTCAACTGTTATTATCAAATCAACTTTAAAATTTGAGCTTGAGGGAAATTGTGTTCTTTTTAACTAATCTACCAAGCTTTTGCTGGGGAGAATATAAAGAGATACAACCCTACAAAAAAGGCCCTAACTAAAACAAGGCCTACTCGAACCCTTAGGAAGCACGGAATCTAGCAAAGGATCGAGTTTGCTCCAACCCTCTAAAGGTTCAAACATTATAGGGAGTTTGCTCCAACCCTCTAAAGGTTCAAACATTATAGGGAGTCTCCAACCCTCTAAAGGTTCTATTGTTCCTCTCACCTCAAAGACCCACTGGATAGCACAGATCCTGCTCGAAATCAATAAATGATAAAATGTGTGTGTGTGTATGTGAAATAAAACATCGAAAACAAGTCTTGAAAGTGTTCAAATTTGGCTTAGAGAGCACTCAATTCATCAGGCAACTATAAGAGCATTGAACCCAACAACAAATTATCAACAGCCTTATTGAACTACAAGAACCGTCAAACCTAGCCACACACTCTCAAAGAATCTACCAACATAAACTATTATAAGTTTAAAGTTCAATTTGAATGGGGAGTGAGAATTTTGCTGATGAACAGAGGTATGATGTAACACATAATTTTCCTCATATTTTAAGAATATGTACTATGAAAAAATGAGAGTTGCAGGATGGTTTT

mRNA sequence

ATGTCGAGCAATCTCAGCCGCCTGTTCTCGTCACCGCCGACTCTCTCAGCCCTGCCGGCGGTGAGTCGCCTAACTTTCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAATCAACAGCCTTCTCGATTGGAGAAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTCGCCGAATCGACACGAGGCTGCTGGAGATGACCGAGGTGGTCAAGATGAAGGAGTTGATACGGAAAAAATGACTCGCGAGATCGGTGGACCAAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTCCGATTTTTGA

Coding sequence (CDS)

ATGTCGAGCAATCTCAGCCGCCTGTTCTCGTCACCGCCGACTCTCTCAGCCCTGCCGGCGGTGAGTCGCCTAACTTTCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAATCAACAGCCTTCTCGATTGGAGAAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTCGCCGAATCGACACGAGGCTGCTGGAGATGACCGAGGTGGTCAAGATGAAGGAGTTGATACGGAAAAAATGACTCGCGAGATCGGTGGACCAAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTCCGATTTTTGA

Protein sequence

MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF
Homology
[Close]
BLAST of CsaV3_5G000570 vs. NCBI nr
Match: XP_011656145.1 (PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sativus] >KGN49871.1 hypothetical protein Csa_5G139490 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 4.0e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60
           MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]
BLAST of CsaV3_5G000570 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 5.8e-35
Identity = 82/111 (73.87%), Postives = 94/111 (84.68%), Query Frame = 0 

Query: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60
           MSSNL+RLF SPP+L+AL AV+R+T  S+SR VSSS+NQQPSRLE+GV  EEQREAGKGS
Sbjct: 1   MSSNLTRLF-SPPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
            P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of CsaV3_5G000570 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata])

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 0 

Query: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60
           MSSNL+RLF SPP+L+AL AV+R T  S+SR VSSS+NQQPSRLE+GV  EEQREAGKGS
Sbjct: 1   MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
            P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of CsaV3_5G000570 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 4.9e-34
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 0 

Query: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60
           MSSNL+RLF SPP+L++L AV+R T  S+SR VSSS+NQQPSRLE+GV  EEQREAGKGS
Sbjct: 1   MSSNLTRLF-SPPSLTSLSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
            P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]
BLAST of CsaV3_5G000570 vs. NCBI nr
Match: XP_024969157.1 (succinate dehydrogenase assembly factor 4, mitochondrial-like [Cynara cardunculus var. scolymus] >KVI07099.1 Protein of unknown function DUF1674 [Cynara cardunculus var. scolymus])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 52/115 (45.22%), Postives = 67/115 (58.26%), Query Frame = 0 

Query: 3   SNLSRLFSSPPTLSALPAVSRLTF-----NSLSRFVSS-SSNQQPSRLEKGVSSEEQREA 62
           SNL RL S+PPT  + PA+    F     NS +RF+SS + N Q  + + G ++EE    
Sbjct: 4   SNLHRLLSTPPTAISRPAIIFSAFRSEFTNSTNRFISSVTENLQTHQDQDGATNEED--- 63

Query: 63  GKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
            K      H    D+  G++  +D  K T E GGP+GPEPTRYGDWER GRCSDF
Sbjct: 64  -KTQKAQGHGEENDEDDGEE--LDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 112

[Close]
BLAST of CsaV3_5G000570 vs. TAIR10
Match: AT5G67490.1 (unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 85  TREIGGPKGPEPTRYGDWERKGRCSDF 112
           T EIGGP+GPEPTRYGDWE++GRCSDF
Sbjct: 82  TGEIGGPRGPEPTRYGDWEQRGRCSDF 108

[Close]
BLAST of CsaV3_5G000570 vs. Swiss-Prot
Match: sp|Q8BTE0|SDHF4_MOUSE (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-09
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 80  DTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           D   +T+E GGPKGPEPTRYGDWERKGRC DF
Sbjct: 73  DVNPVTKEKGGPKGPEPTRYGDWERKGRCIDF 104

[Close]
BLAST of CsaV3_5G000570 vs. Swiss-Prot
Match: sp|Q5VUM1|SDHF4_HUMAN (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 80  DTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           D   +T+E GGP+GPEPTRYGDWERKGRC DF
Sbjct: 77  DVNPVTKEKGGPRGPEPTRYGDWERKGRCIDF 108

[Close]
BLAST of CsaV3_5G000570 vs. Swiss-Prot
Match: sp|Q9VLU6|SDHF4_DROME (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-08
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 81  TEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           T   T EIGGP GPEPTRYGDWERKGR SDF
Sbjct: 88  TNPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

[Close]
BLAST of CsaV3_5G000570 vs. Swiss-Prot
Match: sp|Q54Y25|SDHF4_DICDI (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278459 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 84  MTREIGGPKGPEPTRYGDWERKGRCSDF 112
           +T+EIGGPKGPEPTRY DWER GR SDF
Sbjct: 81  ITKEIGGPKGPEPTRYNDWERNGRVSDF 108

[Close]
BLAST of CsaV3_5G000570 vs. Swiss-Prot
Match: sp|Q92J60|Y209_RICCN (UPF0369 protein RC0209 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=RC0209 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 86  REIGGPKGPEPTRYGDWERKGRCSDF 112
           +EIGG KG EPTRYGDW+ KG+ +DF
Sbjct: 68  KEIGGVKGLEPTRYGDWQHKGKVTDF 93

[Close]
BLAST of CsaV3_5G000570 vs. TrEMBL
Match: tr|A0A0A0KQ66|A0A0A0KQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.6e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60
           MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]
BLAST of CsaV3_5G000570 vs. TrEMBL
Match: tr|A0A103YDI6|A0A103YDI6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_014540 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.8e-12
Identity = 52/115 (45.22%), Postives = 67/115 (58.26%), Query Frame = 0 

Query: 3   SNLSRLFSSPPTLSALPAVSRLTF-----NSLSRFVSS-SSNQQPSRLEKGVSSEEQREA 62
           SNL RL S+PPT  + PA+    F     NS +RF+SS + N Q  + + G ++EE    
Sbjct: 4   SNLHRLLSTPPTAISRPAIIFSAFRSEFTNSTNRFISSVTENLQTHQDQDGATNEED--- 63

Query: 63  GKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
            K      H    D+  G++  +D  K T E GGP+GPEPTRYGDWER GRCSDF
Sbjct: 64  -KTQKAQGHGEENDEDDGEE--LDINKETGEYGGPRGPEPTRYGDWERNGRCSDF 112

[Close]
BLAST of CsaV3_5G000570 vs. TrEMBL
Match: tr|A0A1U8L4N8|A0A1U8L4N8_GOSHI (succinate dehydrogenase assembly factor 4, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107922712 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 0 

Query: 3   SNLSRLFSSPP---------TLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQ 62
           ++LSRLF+S           T S   +V+R  +NS++RFV SS+ Q+   + +  S+E  
Sbjct: 4   TSLSRLFASLSEHSIAKPSFTGSRSESVTRSAYNSVTRFVCSSA-QETQLIREERSNEGD 63

Query: 63  REAGKGS--SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           REA K +  S N+ E  G+D      G    K T E+GGPKGPEPTRYGDWER GRCSDF
Sbjct: 64  REAAKENLESVNKEEDEGED------GDHVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 116

[Close]
BLAST of CsaV3_5G000570 vs. TrEMBL
Match: tr|A0A1U8JCR9|A0A1U8JCR9_GOSHI (succinate dehydrogenase assembly factor 4, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107904574 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 0 

Query: 3   SNLSRLFSSPP---------TLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQ 62
           ++LSRLF+S           T S   +V+R  +NS++RFV SS+ Q+   + +  S+E  
Sbjct: 4   TSLSRLFASLSEHSITKPSFTGSRSDSVTRSAYNSVTRFVCSSA-QETQLIREERSNEGD 63

Query: 63  REAGKGS--SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           REA K +  S N+ E  G+D      G    K T E+GGPKGPEPTRYGDWER GRCSDF
Sbjct: 64  REAAKENLESVNKEEDEGED------GDHVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 116

[Close]
BLAST of CsaV3_5G000570 vs. TrEMBL
Match: tr|A0A0D2QJM8|A0A0D2QJM8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G014800 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 0 

Query: 3   SNLSRLFSSPP---------TLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQ 62
           ++LSRLF+S           T S   +V+R  +NS++RFV SS+ Q+   + +  S+E  
Sbjct: 4   TSLSRLFASLSEHSITKPSFTGSRSDSVTRSAYNSVTRFVCSSA-QETQLIREERSNEGD 63

Query: 63  REAGKGS--SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 112
           REA K +  S N+ E  G+D      G    K T E+GGPKGPEPTRYGDWER GRCSDF
Sbjct: 64  REAAKENLESVNKEEDEGED------GDHVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 116

The following BLAST results are available for this feature:
BLAST of CsaV3_5G000570 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656145.14.0e-52100.00PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sat... [more]
XP_022995844.15.8e-3573.87succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima][more]
XP_022957978.12.2e-3473.87succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata][more]
XP_023532848.14.9e-3472.97succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. ... [more]
XP_024969157.11.2e-1145.22succinate dehydrogenase assembly factor 4, mitochondrial-like [Cynara cardunculu... [more]
BLAST of CsaV3_5G000570 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67490.11.7e-0985.19unknown protein[more]
BLAST of CsaV3_5G000570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8BTE0|SDHF4_MOUSE4.9e-0978.13Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=1009... [more]
sp|Q5VUM1|SDHF4_HUMAN1.1e-0875.00Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606... [more]
sp|Q9VLU6|SDHF4_DROME7.0e-0880.65Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas... [more]
sp|Q54Y25|SDHF4_DICDI1.6e-0782.14Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoi... [more]
sp|Q92J60|Y209_RICCN2.8e-0469.23UPF0369 protein RC0209 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=... [more]
BLAST of CsaV3_5G000570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQ66|A0A0A0KQ66_CUCSA2.6e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=4 SV=1[more]
tr|A0A103YDI6|A0A103YDI6_CYNCS7.8e-1245.22Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_014... [more]
tr|A0A1U8L4N8|A0A1U8L4N8_GOSHI2.3e-1145.83succinate dehydrogenase assembly factor 4, mitochondrial-like OS=Gossypium hirsu... [more]
tr|A0A1U8JCR9|A0A1U8JCR9_GOSHI2.3e-1145.83succinate dehydrogenase assembly factor 4, mitochondrial-like OS=Gossypium hirsu... [more]
tr|A0A0D2QJM8|A0A0D2QJM8_GOSRA2.3e-1145.83Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G014800 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012875DUF1674
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G000570.1CsaV3_5G000570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012875Protein of unknown function DUF1674PFAMPF07896DUF1674coord: 80..111
e-value: 1.2E-15
score: 57.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..89
NoneNo IPR availablePANTHERPTHR28524:SF3SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIALcoord: 20..111
NoneNo IPR availablePANTHERPTHR28524FAMILY NOT NAMEDcoord: 20..111

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G000570CSPI05G03230Wild cucumber (PI 183967)cpicucB285
CsaV3_5G000570Cucsa.202070Cucumber (Gy14) v1cgycucB327
CsaV3_5G000570CmaCh02G011110Cucurbita maxima (Rimu)cmacucB0735
CsaV3_5G000570CmoCh02G011390Cucurbita moschata (Rifu)cmocucB0723
CsaV3_5G000570Cp4.1LG05g05980Cucurbita pepo (Zucchini)cpecucB0910
CsaV3_5G000570CsGy5G000500Cucumber (Gy14) v2cgybcucB232
CsaV3_5G000570Carg14020Silver-seed gourdcarcucB0541
CsaV3_5G000570Cla004900Watermelon (97103) v1cucwmB433
CsaV3_5G000570MELO3C005879Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G000570ClCG01G000490Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G000570Lsi09G000270Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G000570MELO3C005879.2Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G000570Cla97C01G000530Watermelon (97103) v2cucwmbB351
CsaV3_5G000570Bhi12G000553Wax gourdcucwgoB464
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G000570Cucumber (Chinese Long) v3cuccucB119
CsaV3_5G000570Silver-seed gourdcarcucB0333
CsaV3_5G000570Silver-seed gourdcarcucB0577
CsaV3_5G000570Silver-seed gourdcarcucB1035
CsaV3_5G000570Cucumber (Gy14) v2cgybcucB130
CsaV3_5G000570Cucumber (Gy14) v1cgycucB393
CsaV3_5G000570Cucurbita maxima (Rimu)cmacucB0305
CsaV3_5G000570Cucurbita maxima (Rimu)cmacucB0342
CsaV3_5G000570Cucurbita maxima (Rimu)cmacucB0402
CsaV3_5G000570Cucurbita maxima (Rimu)cmacucB0500
CsaV3_5G000570Cucurbita moschata (Rifu)cmocucB0296
CsaV3_5G000570Cucurbita moschata (Rifu)cmocucB0338
CsaV3_5G000570Cucurbita moschata (Rifu)cmocucB0398
CsaV3_5G000570Cucurbita moschata (Rifu)cmocucB0490
CsaV3_5G000570Cucurbita moschata (Rifu)cmocucB0976
CsaV3_5G000570Cucurbita pepo (Zucchini)cpecucB0046
CsaV3_5G000570Cucurbita pepo (Zucchini)cpecucB0226
CsaV3_5G000570Cucurbita pepo (Zucchini)cpecucB0275
CsaV3_5G000570Cucurbita pepo (Zucchini)cpecucB0774
CsaV3_5G000570Cucurbita pepo (Zucchini)cpecucB1071
CsaV3_5G000570Wild cucumber (PI 183967)cpicucB163
CsaV3_5G000570Bottle gourd (USVL1VR-Ls)cuclsiB401
CsaV3_5G000570Bottle gourd (USVL1VR-Ls)cuclsiB402
CsaV3_5G000570Melon (DHL92) v3.5.1cucmeB411
CsaV3_5G000570Melon (DHL92) v3.5.1cucmeB416
CsaV3_5G000570Melon (DHL92) v3.6.1cucmedB404
CsaV3_5G000570Melon (DHL92) v3.6.1cucmedB410
CsaV3_5G000570Watermelon (Charleston Gray)cucwcgB413
CsaV3_5G000570Watermelon (Charleston Gray)cucwcgB417
CsaV3_5G000570Watermelon (97103) v1cucwmB423
CsaV3_5G000570Watermelon (97103) v1cucwmB430
CsaV3_5G000570Watermelon (97103) v2cucwmbB395
CsaV3_5G000570Watermelon (97103) v2cucwmbB399
CsaV3_5G000570Wax gourdcucwgoB493