CmoCh02G011390 (gene) Cucurbita moschata (Rifu)

NameCmoCh02G011390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSuccinate dehydrogenase assembly factor 4, mitochondrial
LocationCmo_Chr02 : 6904181 .. 6904513 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA

mRNA sequence

ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA

Coding sequence (CDS)

ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA
BLAST of CmoCh02G011390 vs. Swiss-Prot
Match: SDHF4_MOUSE (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus GN=Sdhaf4 PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-08
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1

Query: 23  ATSISVSRLVSSSANQQPSRL---------EQGVPGEEQREAGKGSLP----DQHEAAGD 82
           +T++SVSR+       +PS L         ++G P   ++   K  LP    D  E + +
Sbjct: 3   STTLSVSRMTFVWRAARPSLLNHSLRKMSYQEGKPEPAKQALKKSKLPLGRFDSLEDSPE 62

Query: 83  DRDSEDEGAD-VNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
           +R+   +  D VN  T E GGPKGPEPTRYGDWER GRC DF
Sbjct: 63  EREPLQKFPDDVNPVTKEKGGPKGPEPTRYGDWERKGRCIDF 104

BLAST of CmoCh02G011390 vs. Swiss-Prot
Match: SDHF4_DROME (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster GN=Sirup PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 4.4e-07
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1

Query: 81  NKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
           N  TGE+GGP GPEPTRYGDWER GR  DF
Sbjct: 89  NPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

BLAST of CmoCh02G011390 vs. Swiss-Prot
Match: SDHF4_HUMAN (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens GN=SDHAF4 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 45/113 (39.82%), Postives = 52/113 (46.02%), Query Frame = 1

Query: 3   SNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPD 62
           S L  L S  S TA  A          R  SSS   +   ++Q +         K  LP+
Sbjct: 4   SRLPWLLSWVSATAWRAARSPLLCHSLRKTSSSQGGKSELVKQSLK--------KPKLPE 63

Query: 63  QHEAAGDDRDSEDEGA-----DVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
               A +D   E E       DVN  T E GGP+GPEPTRYGDWER GRC DF
Sbjct: 64  GRFDAPEDSHLEKEPLEKFPDDVNPVTKEKGGPRGPEPTRYGDWERKGRCIDF 108

BLAST of CmoCh02G011390 vs. TrEMBL
Match: A0A0A0KQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139490 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 1

Query: 1   MSSNLTRLFS-PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60
           MSSNL+RLFS PP+L+AL AV+R T  S+SR VSSS+NQQPSRLE+GV  EEQREAGKGS
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
            P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

BLAST of CmoCh02G011390 vs. TrEMBL
Match: M5XLA3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013634mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 1

Query: 1   MSSNLTRLFSPPSLTALSAVNRATSI------SVSRLVSSSANQQPSRLEQGVPGEEQRE 60
           M+ NL RLFS  S T LS  +RA  +      SVSRL+ SSA Q  S+ +   P +EQRE
Sbjct: 1   MAINLGRLFS--STTVLSTPSRAEPLTRAAINSVSRLLCSSATQSQSQHQN--PSKEQRE 60

Query: 61  AGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
                L      A DD D +++   +NK TGE+GGPKGPEPTR+GDWERNGRC DF
Sbjct: 61  PTDEKLESTENQADDDDDDDEDDGYMNKETGEIGGPKGPEPTRFGDWERNGRCSDF 112

BLAST of CmoCh02G011390 vs. TrEMBL
Match: W9RP47_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000138 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-15
Identity = 62/122 (50.82%), Postives = 76/122 (62.30%), Query Frame = 1

Query: 1   MSSNLTRLFSPPSLTALSA------------VNRATSISVSRLVSSSANQQPSRLEQGVP 60
           M+SNL RLFS  S+T LS             + R  + S SRLVSSSA  Q  + +Q   
Sbjct: 1   MASNLGRLFS--SITNLSTPKVILSSTRSEPLTRCATNSASRLVSSSA--QKPQYDQENM 60

Query: 61  GEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCY 111
            +EQREA    L ++ E   D  + E+EG  +N+ TGEVGGP+GPEPTRYGDWERNGRCY
Sbjct: 61  NKEQREAIAKDLENEKE---DGVEDEEEGTSLNEQTGEVGGPRGPEPTRYGDWERNGRCY 115

BLAST of CmoCh02G011390 vs. TrEMBL
Match: I3S0H7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.9e-13
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1

Query: 12  PSLTALSA--VNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQ----HE 71
           P+LT   +  + R+ S SV+R + SS+ QQ +      P  EQ +  + SLPD+     E
Sbjct: 15  PALTRTGSEQLTRSVSNSVTRFLCSSSTQQHTEN----PVTEQAQEPRESLPDESKQTRE 74

Query: 72  AAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
              ++ + +D+  DVNK TGEVGGPKGPEPTRYGDWERNGRC DF
Sbjct: 75  GEEEEGEDDDDDVDVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 115

BLAST of CmoCh02G011390 vs. TrEMBL
Match: A0A061G1Q2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015376 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.3e-13
Identity = 57/118 (48.31%), Postives = 73/118 (61.86%), Query Frame = 1

Query: 3   SNLTRLFSP--------PSLTALSA--VNRATSISVSRLVSSSANQQPSRLEQGVPGEEQ 62
           + L+RLFS         PSL+++ +  + R  S S SR +  SA QQP    Q    EE+
Sbjct: 4   ATLSRLFSSISELSIPKPSLSSVRSEPMTRFGSNSASRFLCCSA-QQPQLNHQEKANEEK 63

Query: 63  REAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
           REA K     + E   ++ D +++G  VNK TGEVGGP+GPEPTRYGDWERNGRCYDF
Sbjct: 64  REAVKED--PEIENKENEEDDDEDGDHVNKQTGEVGGPRGPEPTRYGDWERNGRCYDF 118

BLAST of CmoCh02G011390 vs. TAIR10
Match: AT5G67490.1 (AT5G67490.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-09
Identity = 43/99 (43.43%), Postives = 52/99 (52.53%), Query Frame = 1

Query: 26  ISVSRLVSSSANQQPSR-LEQGVPGEEQREAGKGSL-----PDQHEAAGDDRDSEDE--- 85
           I+ SR VSS   +  SR L  G P   Q  +    L     PDQ+         E+E   
Sbjct: 10  IAPSRSVSSRFLEPVSRFLSSGTPPPPQAPSPNQDLNRDVKPDQNLQQNLQMQKEEEEEG 69

Query: 86  -----GADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
                G  VN+ TGE+GGP+GPEPTRYGDWE+ GRC DF
Sbjct: 70  EGGGGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108

BLAST of CmoCh02G011390 vs. NCBI nr
Match: gi|778708202|ref|XP_011656145.1| (PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 3.2e-34
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 1

Query: 1   MSSNLTRLFS-PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60
           MSSNL+RLFS PP+L+AL AV+R T  S+SR VSSS+NQQPSRLE+GV  EEQREAGKGS
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
            P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

BLAST of CmoCh02G011390 vs. NCBI nr
Match: gi|659074410|ref|XP_008437589.1| (PREDICTED: UPF0369 protein C6orf57 homolog [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-32
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 1

Query: 1   MSSNLTRLFS-PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60
           MSS+L+RLFS PP+L+AL  V R TS S+SR VSSS+NQQPSR EQ V  EEQREA KGS
Sbjct: 1   MSSHLSRLFSSPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQVVSSEEQREAEKGS 60

Query: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
            P+QHEAAGDDR S+D+G D  K   E+GGPKG EPTRYGDWERNGRCYDF
Sbjct: 61  SPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

BLAST of CmoCh02G011390 vs. NCBI nr
Match: gi|596011648|ref|XP_007218626.1| (hypothetical protein PRUPE_ppa013634mg [Prunus persica])

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 1

Query: 1   MSSNLTRLFSPPSLTALSAVNRATSI------SVSRLVSSSANQQPSRLEQGVPGEEQRE 60
           M+ NL RLFS  S T LS  +RA  +      SVSRL+ SSA Q  S+ +   P +EQRE
Sbjct: 1   MAINLGRLFS--STTVLSTPSRAEPLTRAAINSVSRLLCSSATQSQSQHQN--PSKEQRE 60

Query: 61  AGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
                L      A DD D +++   +NK TGE+GGPKGPEPTR+GDWERNGRC DF
Sbjct: 61  PTDEKLESTENQADDDDDDDEDDGYMNKETGEIGGPKGPEPTRFGDWERNGRCSDF 112

BLAST of CmoCh02G011390 vs. NCBI nr
Match: gi|703114907|ref|XP_010100771.1| (hypothetical protein L484_006836 [Morus notabilis])

HSP 1 Score: 88.6 bits (218), Expect = 7.5e-15
Identity = 62/122 (50.82%), Postives = 76/122 (62.30%), Query Frame = 1

Query: 1   MSSNLTRLFSPPSLTALSA------------VNRATSISVSRLVSSSANQQPSRLEQGVP 60
           M+SNL RLFS  S+T LS             + R  + S SRLVSSSA  Q  + +Q   
Sbjct: 1   MASNLGRLFS--SITNLSTPKVILSSTRSEPLTRCATNSASRLVSSSA--QKPQYDQENM 60

Query: 61  GEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCY 111
            +EQREA    L ++ E   D  + E+EG  +N+ TGEVGGP+GPEPTRYGDWERNGRCY
Sbjct: 61  NKEQREAIAKDLENEKE---DGVEDEEEGTSLNEQTGEVGGPRGPEPTRYGDWERNGRCY 115

BLAST of CmoCh02G011390 vs. NCBI nr
Match: gi|657969991|ref|XP_008376732.1| (PREDICTED: UPF0369 protein C6orf57-like [Malus domestica])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1

Query: 1   MSSNLTRLFSP---PSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGK 60
           M+ NL RLFS    P+++A   + RA   SVSR++ SSA+   ++ E+  P +EQ E   
Sbjct: 1   MAINLGRLFSSKTIPTISAAEPLTRAGVNSVSRVLCSSASHSQTQHEK--PSKEQGEPIV 60

Query: 61  GSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
             L +Q E   DD D +++   VNK TGE+GGP+GPEPTR+GDWERNGRC DF
Sbjct: 61  EKLENQAEEEEDDDDDDNDDGFVNKKTGEIGGPRGPEPTRFGDWERNGRCSDF 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SDHF4_MOUSE5.2e-0841.18Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus GN=Sdha... [more]
SDHF4_DROME4.4e-0776.67Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas... [more]
SDHF4_HUMAN1.3e-0639.82Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens GN=SDHA... [more]
Match NameE-valueIdentityDescription
A0A0A0KQ66_CUCSA2.2e-3473.87Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139490 PE=4 SV=1[more]
M5XLA3_PRUPE2.3e-1550.86Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013634mg PE=4 SV=1[more]
W9RP47_9ROSA5.2e-1550.82Uncharacterized protein OS=Morus notabilis GN=L484_000138 PE=4 SV=1[more]
I3S0H7_LOTJA4.9e-1348.57Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A061G1Q2_THECC8.3e-1348.31Uncharacterized protein OS=Theobroma cacao GN=TCM_015376 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G67490.13.8e-0943.43 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778708202|ref|XP_011656145.1|3.2e-3473.87PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial [Cucumis sat... [more]
gi|659074410|ref|XP_008437589.1|3.0e-3272.07PREDICTED: UPF0369 protein C6orf57 homolog [Cucumis melo][more]
gi|596011648|ref|XP_007218626.1|3.4e-1550.86hypothetical protein PRUPE_ppa013634mg [Prunus persica][more]
gi|703114907|ref|XP_010100771.1|7.5e-1550.82hypothetical protein L484_006836 [Morus notabilis][more]
gi|657969991|ref|XP_008376732.1|1.7e-1448.67PREDICTED: UPF0369 protein C6orf57-like [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012875DUF1674
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G011390.1CmoCh02G011390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012875Protein of unknown function DUF1674PFAMPF07896DUF1674coord: 74..110
score: 9.6
NoneNo IPR availablePANTHERPTHR28524FAMILY NOT NAMEDcoord: 74..110
score: 2.4
NoneNo IPR availablePANTHERPTHR28524:SF3UPF0369 PROTEIN C6ORF57coord: 74..110
score: 2.4

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G011390Wax gourdcmowgoB0719
CmoCh02G011390Cucurbita moschata (Rifu)cmocmoB212
CmoCh02G011390Cucurbita moschata (Rifu)cmocmoB251
CmoCh02G011390Cucurbita moschata (Rifu)cmocmoB281
CmoCh02G011390Cucurbita moschata (Rifu)cmocmoB333
CmoCh02G011390Cucumber (Gy14) v1cgycmoB0712
CmoCh02G011390Cucurbita maxima (Rimu)cmacmoB260
CmoCh02G011390Cucurbita maxima (Rimu)cmacmoB299
CmoCh02G011390Cucurbita maxima (Rimu)cmacmoB333
CmoCh02G011390Cucurbita maxima (Rimu)cmacmoB416
CmoCh02G011390Wild cucumber (PI 183967)cmocpiB599
CmoCh02G011390Cucumber (Chinese Long) v2cmocuB593
CmoCh02G011390Melon (DHL92) v3.5.1cmomeB567
CmoCh02G011390Melon (DHL92) v3.5.1cmomeB572
CmoCh02G011390Watermelon (Charleston Gray)cmowcgB557
CmoCh02G011390Watermelon (Charleston Gray)cmowcgB560
CmoCh02G011390Watermelon (97103) v1cmowmB558
CmoCh02G011390Cucurbita pepo (Zucchini)cmocpeB546
CmoCh02G011390Cucurbita pepo (Zucchini)cmocpeB551
CmoCh02G011390Cucurbita pepo (Zucchini)cmocpeB557
CmoCh02G011390Cucurbita pepo (Zucchini)cmocpeB589
CmoCh02G011390Bottle gourd (USVL1VR-Ls)cmolsiB557
CmoCh02G011390Bottle gourd (USVL1VR-Ls)cmolsiB559
CmoCh02G011390Cucumber (Gy14) v2cgybcmoB372
CmoCh02G011390Melon (DHL92) v3.6.1cmomedB650
CmoCh02G011390Melon (DHL92) v3.6.1cmomedB653
CmoCh02G011390Silver-seed gourdcarcmoB0412
CmoCh02G011390Silver-seed gourdcarcmoB0734
CmoCh02G011390Silver-seed gourdcarcmoB1329
CmoCh02G011390Cucumber (Chinese Long) v3cmocucB0707
CmoCh02G011390Watermelon (97103) v2cmowmbB621
CmoCh02G011390Watermelon (97103) v2cmowmbB625