Lsi08G012120 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G012120
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionATP synthase subunit b
Locationchr08 : 20631582 .. 20632232 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACGTAATCATGGCCTCTTCCAAACCCCTCTCTCCTCCTCTTTCCATCTCCAACAAAACCCCCAAATTCTCCATCCCCAAAACCCTAACCCTAATCCGATCATTCCTCAAAAAGCCCCAATCAATCTCCATCTCCACCTCCACTCTCAAATCCCTCTCCCTCTTCGCCGCCACATCTCTCTCCTACGCTCCCCCTTCCCTCGCCGAAGAGATCGAGAAGGCCGCTCTCTTCGACTTCAACCTCACTCTCCCGATCATGATGGCTCAATTCCTCCTCCTCATGGTCGGTCTTGACAAAATCTACTTCTCCCCACTCGGCAAATTCATGGATGAAAGAGATGCCGCCATTAAAGAGAAGCTCAACAGCGTCAAAGACACTTCCGAGGAGGTCAAGCAGCTCGACGAGCAAGCTGCCGCCGTTATGAGGGCTGCTAGAGCGGAGATTTCGGCGGCGCTTACGAAGATGAAGAAGGAGACTCAAGCGGAGGTGGAGGAGAAACTGGCCGAAGGGAGGAAGAAAATTGATGCGGAGTTGCAGGAGGCATTGGCGAACTTGGAGAATCAGAAACTGGAAACCATTAAATCCCTTGATGCTCAAATTGCAGCTCTTAGTGATGAGATCGTCAAGAAGGTTCTTCCTGTTTAA

mRNA sequence

ATGGCGAACGTAATCATGGCCTCTTCCAAACCCCTCTCTCCTCCTCTTTCCATCTCCAACAAAACCCCCAAATTCTCCATCCCCAAAACCCTAACCCTAATCCGATCATTCCTCAAAAAGCCCCAATCAATCTCCATCTCCACCTCCACTCTCAAATCCCTCTCCCTCTTCGCCGCCACATCTCTCTCCTACGCTCCCCCTTCCCTCGCCGAAGAGATCGAGAAGGCCGCTCTCTTCGACTTCAACCTCACTCTCCCGATCATGATGGCTCAATTCCTCCTCCTCATGGTCGGTCTTGACAAAATCTACTTCTCCCCACTCGGCAAATTCATGGATGAAAGAGATGCCGCCATTAAAGAGAAGCTCAACAGCGTCAAAGACACTTCCGAGGAGGTCAAGCAGCTCGACGAGCAAGCTGCCGCCGTTATGAGGGCTGCTAGAGCGGAGATTTCGGCGGCGCTTACGAAGATGAAGAAGGAGACTCAAGCGGAGGTGGAGGAGAAACTGGCCGAAGGGAGGAAGAAAATTGATGCGGAGTTGCAGGAGGCATTGGCGAACTTGGAGAATCAGAAACTGGAAACCATTAAATCCCTTGATGCTCAAATTGCAGCTCTTAGTGATGAGATCGTCAAGAAGGTTCTTCCTGTTTAA

Coding sequence (CDS)

ATGGCGAACGTAATCATGGCCTCTTCCAAACCCCTCTCTCCTCCTCTTTCCATCTCCAACAAAACCCCCAAATTCTCCATCCCCAAAACCCTAACCCTAATCCGATCATTCCTCAAAAAGCCCCAATCAATCTCCATCTCCACCTCCACTCTCAAATCCCTCTCCCTCTTCGCCGCCACATCTCTCTCCTACGCTCCCCCTTCCCTCGCCGAAGAGATCGAGAAGGCCGCTCTCTTCGACTTCAACCTCACTCTCCCGATCATGATGGCTCAATTCCTCCTCCTCATGGTCGGTCTTGACAAAATCTACTTCTCCCCACTCGGCAAATTCATGGATGAAAGAGATGCCGCCATTAAAGAGAAGCTCAACAGCGTCAAAGACACTTCCGAGGAGGTCAAGCAGCTCGACGAGCAAGCTGCCGCCGTTATGAGGGCTGCTAGAGCGGAGATTTCGGCGGCGCTTACGAAGATGAAGAAGGAGACTCAAGCGGAGGTGGAGGAGAAACTGGCCGAAGGGAGGAAGAAAATTGATGCGGAGTTGCAGGAGGCATTGGCGAACTTGGAGAATCAGAAACTGGAAACCATTAAATCCCTTGATGCTCAAATTGCAGCTCTTAGTGATGAGATCGTCAAGAAGGTTCTTCCTGTTTAA

Protein sequence

MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIRSFLKKPQSISISTSTLKSLSLFAATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV
Homology
[Close]
BLAST of Lsi08G012120 vs. Swiss-Prot
Match: ATPX_SPIOL (ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-57
Identity = 143/221 (64.71%), Postives = 172/221 (77.83%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSISNKTPK--FSIPKTLTLIRSFLKKPQSISISTSTLKSLSLFA 60
           MAN+++ASS    P  + +  TPK  F + KT  L  S  + P    ++ S LKS ++ A
Sbjct: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQLPPLKHLNLSVLKSAAITA 60

Query: 61  AT-SLSYAP--PSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERD 120
              +LS+    PSLAEEIEKA+LFDFNLTLPI+MA+FL LM  LDKIY++PLG FMD+RD
Sbjct: 61  TPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRD 120

Query: 121 AAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKK 180
           A+IKE+L+ VKDTS EVKQL+EQA AVMRAARAEISAAL KMKKETQ EVE KLAEGRKK
Sbjct: 121 ASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180

Query: 181 IDAELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           I+ ELQEAL +LE QK +TIKSLD+QI+ALSD+IVKKVLPV
Sbjct: 181 IEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPV 221

[Close]
BLAST of Lsi08G012120 vs. Swiss-Prot
Match: ATPX_CHLRE (ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 72/183 (39.34%), Postives = 118/183 (64.48%), Query Frame = 1 

Query: 33  LIRSFLKKPQSISISTSTLKSLSLFAATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQF 92
           ++R+  +KPQ   ++     +LS   A +L   P +     E   +FDFNLTLP+M  +F
Sbjct: 27  VVRASAQKPQQ-QLAQLAKPALSAIVANALMAMPAAA----EAGKIFDFNLTLPVMAGEF 86

Query: 93  LLLMVGLDKIYFSPLGKFMDERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISA 152
           LLLMV L+K +F+P+GK +DERD  I+ KL SVKD + +V +L  +A  ++++AR+++SA
Sbjct: 87  LLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDVDKLVLEAETILKSARSDVSA 146

Query: 153 ALTKMKKETQAEVEEKLAEGRKKIDAELQEALANLENQKLETIKSLDAQIAALSDEIVKK 212
            +   K   Q+E+++   E + KI AE++ ++A LE +    +KSLDAQ+  +S E++K+
Sbjct: 147 MINTKKAAKQSELDKTYNEAKAKITAEVESSIAGLEQESASMLKSLDAQVDKISAEVLKR 204

Query: 213 VLP 216
           VLP
Sbjct: 207 VLP 204

[Close]
BLAST of Lsi08G012120 vs. Swiss-Prot
Match: ATPX_CYAPA (ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-15
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 1 

Query: 69  LAEEIEKA----ALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKEKLNS 128
           LA E E A     LFDF+ TLP+MM Q L+LM+ L+ +++ PL K +DER   I+   N 
Sbjct: 8   LAIETEAAKPEGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNE 67

Query: 129 VKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAELQEAL 188
            +    +  +L  Q    +  AR   S      + E Q  V EKL E +KK D+EL  A 
Sbjct: 68  AEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASAT 127

Query: 189 ANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
             LE QK E +KSL++++  LS +I++K+L +
Sbjct: 128 NKLELQKDEALKSLESEVQTLSTKILEKLLGI 159

[Close]
BLAST of Lsi08G012120 vs. Swiss-Prot
Match: ATPX_SYNP1 (ATP synthase subunit b' OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.5e-14
Identity = 47/148 (31.76%), Postives = 86/148 (58.11%), Query Frame = 1 

Query: 67  PSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKEKLNSVK 126
           P L   I +  +FDF+ TLP+M  QFL+L V L+ + + PLG+ +D RD  I+  L   K
Sbjct: 11  PLLFRPILERLMFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAK 70

Query: 127 DTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAELQEALAN 186
           +  ++  +L  Q    +   R E  A + + + E Q     ++A  ++ + AEL +A A 
Sbjct: 71  ERLQQATELANQYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQAE 130

Query: 187 LENQKLETIKSLDAQIAALSDEIVKKVL 215
           ++ QK  T+++L+ Q+++LS++++ K+L
Sbjct: 131 IDQQKQATLQALEGQVSSLSEQLLAKLL 158

[Close]
BLAST of Lsi08G012120 vs. Swiss-Prot
Match: ATPX_PORPU (ATP synthase subunit b', chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.5e-14
Identity = 55/151 (36.42%), Postives = 85/151 (56.29%), Query Frame = 1 

Query: 64  YAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKEKLN 123
           Y P  LAEEIE   LFDFN TLP+M  QFL+LM+ L+ I++ P+ K +DERD  I+  L 
Sbjct: 3   YLPLLLAEEIE-GGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLT 62

Query: 124 SVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAELQEA 183
           +      +  +L  +    +  AR +  A +   +K+ Q+ V E + + +   +  + EA
Sbjct: 63  TASSMLVKADELAAKYEEDLSKARRDAQAKIAASQKDAQSIVSEDIKKAQMNAEKLITEA 122

Query: 184 LANLENQKLETIKSLDAQIAALSDEIVKKVL 215
              L  QK E +K+L+ Q+  LSD+I  K+L
Sbjct: 123 SKQLNIQKEEALKTLEDQVDTLSDQIKTKLL 152

[Close]
BLAST of Lsi08G012120 vs. TrEMBL
Match: A0A0A0LM10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381850 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.1e-96
Identity = 204/216 (94.44%), Postives = 210/216 (97.22%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIRSFLKKPQSISISTSTLKSLSLFAAT 60
           MANVIMASSKP SPPLSISNKTPKFSIPKTLTLI  FLKKPQSIS+STSTLKSLSLFAAT
Sbjct: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60

Query: 61  SLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE 120
           SLS+APPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDK+YFSPLGKFMDERD AIKE
Sbjct: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120

Query: 121 KLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAEL 180
           KLNSVKDTSEEVKQLD+QAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRK+ID EL
Sbjct: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKRIDVEL 180

Query: 181 QEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           QEALANLENQK ETIKSLDAQIAALSD+IVKKVLPV
Sbjct: 181 QEALANLENQKAETIKSLDAQIAALSDDIVKKVLPV 216

[Close]
BLAST of Lsi08G012120 vs. TrEMBL
Match: A0A067KBI4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07152 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.7e-73
Identity = 174/219 (79.45%), Postives = 189/219 (86.30%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSISNKT--PKFSIPK-TLTLIRSFLKKPQSISISTSTLKSLSLF 60
           MA +IMASSKPL P  S    T  PK  IP+ +L +    + K Q  S+S+STLKSLSL 
Sbjct: 1   MAAMIMASSKPLIPLSSAIPTTTRPKIQIPQLSLPVKLPKVTKTQLASLSSSTLKSLSLL 60

Query: 61  AATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAA 120
           AATS ++APPSLAEEIEKAALFDFNLTLPIMM QFLLLMVGLDKIYFSPLGKFMDERDAA
Sbjct: 61  AATSFTFAPPSLAEEIEKAALFDFNLTLPIMMVQFLLLMVGLDKIYFSPLGKFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKID 180
           IKEKLNSVKDTSEEVKQL+EQAAAVMRAARAEISAAL KMKKETQAE+E+KLAE +KKI+
Sbjct: 121 IKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQAELEQKLAEEKKKIE 180

Query: 181 AELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           AELQEAL NLE QK ETIKSLD+QIAALSDEIVKKVLPV
Sbjct: 181 AELQEALGNLEKQKEETIKSLDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of Lsi08G012120 vs. TrEMBL
Match: A9PE72_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s01830g PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.4e-72
Identity = 168/219 (76.71%), Postives = 187/219 (85.39%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSIS---NKTPKFSIPKTLTLIRSFLKKPQSISISTSTLKSLSLF 60
           MAN+IM +SKPL    S S   N  PK  IP+        + KPQ +S+STSTLKSLSL 
Sbjct: 1   MANMIMGTSKPLITLSSSSLPTNSKPKLQIPRLSFPKLLKITKPQLLSLSTSTLKSLSLI 60

Query: 61  AATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAA 120
           AATSL++APPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDKI+FSPLG FMDERDAA
Sbjct: 61  AATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKID 180
           IKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAAL KMKKETQ EVE+KLAEGRKKI+
Sbjct: 121 IKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEGRKKIE 180

Query: 181 AELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           AELQEALA L+ QK ETIK+LD+QIAALSDEIVKKVLPV
Sbjct: 181 AELQEALAKLDTQKEETIKALDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of Lsi08G012120 vs. TrEMBL
Match: A9PFE9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27170g PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.6e-71
Identity = 168/224 (75.00%), Postives = 190/224 (84.82%), Query Frame = 1 

Query: 1   MANVIMASSKPL----SPPLSISNKT----PKFSIPKTLTLIRSFLKKPQSISISTSTLK 60
           MAN+IMASSKPL    S  L  +NK     P+ S PK L +      KPQ +S+STSTLK
Sbjct: 1   MANMIMASSKPLITLSSSSLPTNNKPKLQIPQLSFPKILKIT-----KPQLLSLSTSTLK 60

Query: 61  SLSLFAATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMD 120
           SLSL AATSL++APPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDKI+F+PLG FMD
Sbjct: 61  SLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFTPLGNFMD 120

Query: 121 ERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEG 180
           ERD+AIKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAAL KMKKETQ EVE+KLAEG
Sbjct: 121 ERDSAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEG 180

Query: 181 RKKIDAELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           RKKI+A+LQEALA LE QK ET+K+LD+QIAALSD IVKKVLPV
Sbjct: 181 RKKIEADLQEALAKLETQKEETMKALDSQIAALSDGIVKKVLPV 219

[Close]
BLAST of Lsi08G012120 vs. TrEMBL
Match: B9RP32_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923760 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.1e-68
Identity = 162/215 (75.35%), Postives = 180/215 (83.72%), Query Frame = 1 

Query: 2   ANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIR-SFLKKPQSISISTSTLKSLSLFAAT 61
           A VIMASSKPL    S     PK  I +   L +   + K Q  S+S+STLKS+SL AAT
Sbjct: 355 AAVIMASSKPLISLSSGLPTKPKLQISQLAHLTKLPKINKTQLASLSSSTLKSISLLAAT 414

Query: 62  SLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE 121
           S ++APPSLA EIEKAALFDFNLTLPIMMAQFL+LMV LDKIYFSPLGKFMDERDAAIKE
Sbjct: 415 SFTFAPPSLAAEIEKAALFDFNLTLPIMMAQFLILMVALDKIYFSPLGKFMDERDAAIKE 474

Query: 122 KLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAEL 181
           KL+SVKDTS EVKQL+EQAAAVMRAARAEI+AAL+KMKKETQ E+EE+LA  +KKI+AEL
Sbjct: 475 KLSSVKDTSSEVKQLEEQAAAVMRAARAEIAAALSKMKKETQTELEERLAAEKKKIEAEL 534

Query: 182 QEALANLENQKLETIKSLDAQIAALSDEIVKKVLP 216
           QEAL NLE QK ETIKSLD+QIAALSDEIVKKVLP
Sbjct: 535 QEALGNLEKQKEETIKSLDSQIAALSDEIVKKVLP 569

[Close]
BLAST of Lsi08G012120 vs. TAIR10
Match: AT4G32260.1 (AT4G32260.1 ATPase, F0 complex, subunit B/B', bacterial/chloroplast)

HSP 1 Score: 237.3 bits (604), Expect = 9.0e-63
Identity = 148/225 (65.78%), Postives = 181/225 (80.44%), Query Frame = 1 

Query: 2   ANVIMASSKPLSPPLSISN-------KTPKFS----IPKTLTLIRSFLKKPQSISISTST 61
           AN IMASSKPL   +S+S+       + PKF+    IPK+LT       K  ++S+S++T
Sbjct: 3   ANSIMASSKPL---ISLSSNQQPNRVQIPKFAKLPQIPKSLTSSTDLRSK--ALSLSSAT 62

Query: 62  LKSLSLFAATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKF 121
            KSL+L AA    +APPS+AE +EKA LFDFNLTLPI++ +FL LM  LDK+Y+SPLG F
Sbjct: 63  AKSLALIAA----FAPPSMAEAMEKAQLFDFNLTLPIIVVEFLFLMFALDKVYYSPLGNF 122

Query: 122 MDERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLA 181
           MD+RDA+IKEKL SVKDTS EVK+LDEQAAAVMRAARAEI+AAL KMKKETQ EVEEKLA
Sbjct: 123 MDQRDASIKEKLASVKDTSTEVKELDEQAAAVMRAARAEIAAALNKMKKETQVEVEEKLA 182

Query: 182 EGRKKIDAELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLP 216
           EGRKK++ EL+EALA+LE+QK ETIK+LD+QIAALS++IVKKVLP
Sbjct: 183 EGRKKVEEELKEALASLESQKEETIKALDSQIAALSEDIVKKVLP 218

[Close]
BLAST of Lsi08G012120 vs. NCBI nr
Match: gi|659088922|ref|XP_008445233.1| (PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis melo])

HSP 1 Score: 359.4 bits (921), Expect = 4.5e-96
Identity = 206/216 (95.37%), Postives = 210/216 (97.22%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIRSFLKKPQSISISTSTLKSLSLFAAT 60
           MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLI  FLK PQSIS+STSTLKSLSLFAAT
Sbjct: 1   MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIPQFLKNPQSISLSTSTLKSLSLFAAT 60

Query: 61  SLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE 120
           SLS+APPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE
Sbjct: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE 120

Query: 121 KLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAEL 180
           KL+SVKDTSE VKQLDEQAAAVMRAARAEISAAL KMKKETQAEVEEKLAEGRK+IDAEL
Sbjct: 121 KLSSVKDTSEGVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKRIDAEL 180

Query: 181 QEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           QEALANLENQK ETIKSLDAQIAALSDEIVKKVLPV
Sbjct: 181 QEALANLENQKAETIKSLDAQIAALSDEIVKKVLPV 216

[Close]
BLAST of Lsi08G012120 vs. NCBI nr
Match: gi|449441904|ref|XP_004138722.1| (PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 5.8e-96
Identity = 204/216 (94.44%), Postives = 210/216 (97.22%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSISNKTPKFSIPKTLTLIRSFLKKPQSISISTSTLKSLSLFAAT 60
           MANVIMASSKP SPPLSISNKTPKFSIPKTLTLI  FLKKPQSIS+STSTLKSLSLFAAT
Sbjct: 1   MANVIMASSKPPSPPLSISNKTPKFSIPKTLTLIPQFLKKPQSISLSTSTLKSLSLFAAT 60

Query: 61  SLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAAIKE 120
           SLS+APPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDK+YFSPLGKFMDERD AIKE
Sbjct: 61  SLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKE 120

Query: 121 KLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKIDAEL 180
           KLNSVKDTSEEVKQLD+QAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRK+ID EL
Sbjct: 121 KLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKRIDVEL 180

Query: 181 QEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           QEALANLENQK ETIKSLDAQIAALSD+IVKKVLPV
Sbjct: 181 QEALANLENQKAETIKSLDAQIAALSDDIVKKVLPV 216

[Close]
BLAST of Lsi08G012120 vs. NCBI nr
Match: gi|802627065|ref|XP_012076536.1| (PREDICTED: ATP synthase subunit b', chloroplastic [Jatropha curcas])

HSP 1 Score: 283.9 bits (725), Expect = 2.4e-73
Identity = 174/219 (79.45%), Postives = 189/219 (86.30%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSISNKT--PKFSIPK-TLTLIRSFLKKPQSISISTSTLKSLSLF 60
           MA +IMASSKPL P  S    T  PK  IP+ +L +    + K Q  S+S+STLKSLSL 
Sbjct: 1   MAAMIMASSKPLIPLSSAIPTTTRPKIQIPQLSLPVKLPKVTKTQLASLSSSTLKSLSLL 60

Query: 61  AATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAA 120
           AATS ++APPSLAEEIEKAALFDFNLTLPIMM QFLLLMVGLDKIYFSPLGKFMDERDAA
Sbjct: 61  AATSFTFAPPSLAEEIEKAALFDFNLTLPIMMVQFLLLMVGLDKIYFSPLGKFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKID 180
           IKEKLNSVKDTSEEVKQL+EQAAAVMRAARAEISAAL KMKKETQAE+E+KLAE +KKI+
Sbjct: 121 IKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQAELEQKLAEEKKKIE 180

Query: 181 AELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           AELQEAL NLE QK ETIKSLD+QIAALSDEIVKKVLPV
Sbjct: 181 AELQEALGNLEKQKEETIKSLDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of Lsi08G012120 vs. NCBI nr
Match: gi|566213731|ref|XP_002324301.2| (hypothetical protein POPTR_0018s01830g [Populus trichocarpa])

HSP 1 Score: 280.0 bits (715), Expect = 3.4e-72
Identity = 168/219 (76.71%), Postives = 187/219 (85.39%), Query Frame = 1 

Query: 1   MANVIMASSKPLSPPLSIS---NKTPKFSIPKTLTLIRSFLKKPQSISISTSTLKSLSLF 60
           MAN+IM +SKPL    S S   N  PK  IP+        + KPQ +S+STSTLKSLSL 
Sbjct: 1   MANMIMGTSKPLITLSSSSLPTNSKPKLQIPRLSFPKLLKITKPQLLSLSTSTLKSLSLI 60

Query: 61  AATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAA 120
           AATSL++APPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDKI+FSPLG FMDERDAA
Sbjct: 61  AATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNFMDERDAA 120

Query: 121 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKKID 180
           IKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAAL KMKKETQ EVE+KLAEGRKKI+
Sbjct: 121 IKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEGRKKIE 180

Query: 181 AELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           AELQEALA L+ QK ETIK+LD+QIAALSDEIVKKVLPV
Sbjct: 181 AELQEALAKLDTQKEETIKALDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of Lsi08G012120 vs. NCBI nr
Match: gi|566178378|ref|XP_002308670.2| (hypothetical protein POPTR_0006s27170g [Populus trichocarpa])

HSP 1 Score: 276.6 bits (706), Expect = 3.8e-71
Identity = 168/224 (75.00%), Postives = 190/224 (84.82%), Query Frame = 1 

Query: 1   MANVIMASSKPL----SPPLSISNKT----PKFSIPKTLTLIRSFLKKPQSISISTSTLK 60
           MAN+IMASSKPL    S  L  +NK     P+ S PK L +      KPQ +S+STSTLK
Sbjct: 1   MANMIMASSKPLITLSSSSLPTNNKPKLQIPQLSFPKILKIT-----KPQLLSLSTSTLK 60

Query: 61  SLSLFAATSLSYAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMD 120
           SLSL AATSL++APPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDKI+F+PLG FMD
Sbjct: 61  SLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFTPLGNFMD 120

Query: 121 ERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEG 180
           ERD+AIKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAAL KMKKETQ EVE+KLAEG
Sbjct: 121 ERDSAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEG 180

Query: 181 RKKIDAELQEALANLENQKLETIKSLDAQIAALSDEIVKKVLPV 217
           RKKI+A+LQEALA LE QK ET+K+LD+QIAALSD IVKKVLPV
Sbjct: 181 RKKIEADLQEALAKLETQKEETMKALDSQIAALSDGIVKKVLPV 219

The following BLAST results are available for this feature:
BLAST of Lsi08G012120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPX_SPIOL3.1e-5764.71ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2[more]
ATPX_CHLRE1.1e-2539.34ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1... [more]
ATPX_CYAPA5.0e-1538.16ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1[more]
ATPX_SYNP19.5e-1431.76ATP synthase subunit b' OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1[more]
ATPX_PORPU9.5e-1436.42ATP synthase subunit b', chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1[more]
BLAST of Lsi08G012120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM10_CUCSA4.1e-9694.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381850 PE=3 SV=1[more]
A0A067KBI4_JATCU1.7e-7379.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07152 PE=3 SV=1[more]
A9PE72_POPTR2.4e-7276.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s01830g PE=2 SV=1[more]
A9PFE9_POPTR2.6e-7175.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27170g PE=2 SV=1[more]
B9RP32_RICCO6.1e-6875.35Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923760 PE=4 SV=1[more]
BLAST of Lsi08G012120 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32260.19.0e-6365.78 ATPase, F0 complex, subunit B/B', bacterial/chloroplast[more]
BLAST of Lsi08G012120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088922|ref|XP_008445233.1|4.5e-9695.37PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis melo][more]
gi|449441904|ref|XP_004138722.1|5.8e-9694.44PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis sativus][more]
gi|802627065|ref|XP_012076536.1|2.4e-7379.45PREDICTED: ATP synthase subunit b', chloroplastic [Jatropha curcas][more]
gi|566213731|ref|XP_002324301.2|3.4e-7276.71hypothetical protein POPTR_0018s01830g [Populus trichocarpa][more]
gi|566178378|ref|XP_002308670.2|3.8e-7175.00hypothetical protein POPTR_0006s27170g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
Vocabulary: INTERPRO
TermDefinition
IPR002146ATP_synth_b/b'su_bac/chlpt
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009735 response to cytokinin
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G012120.1Lsi08G012120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002146ATPase, F0 complex, subunit B/B', bacterial/chloroplastPFAMPF00430ATP-synt_Bcoord: 84..214
score: 7.4
NoneNo IPR availableunknownCoilCoilcoord: 162..193
score: -coord: 118..145
scor
NoneNo IPR availablePANTHERPTHR33445FAMILY NOT NAMEDcoord: 63..215
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G012120Csa2G381850Cucumber (Chinese Long) v2culsiB140
Lsi08G012120CSPI02G23620Wild cucumber (PI 183967)cpilsiB139
Lsi08G012120Cucsa.162520Cucumber (Gy14) v1cgylsiB267
Lsi08G012120CmoCh12G002930Cucurbita moschata (Rifu)cmolsiB175
Lsi08G012120Cla022333Watermelon (97103) v1lsiwmB465
Lsi08G012120MELO3C011269Melon (DHL92) v3.5.1lsimeB474
Lsi08G012120ClCG08G013430Watermelon (Charleston Gray)lsiwcgB438
Lsi08G012120MELO3C011269.2Melon (DHL92) v3.6.1lsimedB493
Lsi08G012120Cla97C08G156800Watermelon (97103) v2lsiwmbB444
Lsi08G012120Bhi04G000775Wax gourdlsiwgoB603
Lsi08G012120Cp4.1LG07g02970Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G012120CsGy2G023380Cucumber (Gy14) v2cgyblsiB126
Lsi08G012120Carg03933Silver-seed gourdcarlsiB898
Lsi08G012120CsaV3_2G032160Cucumber (Chinese Long) v3cuclsiB152
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G012120Cucurbita maxima (Rimu)cmalsiB039
Lsi08G012120Cucurbita maxima (Rimu)cmalsiB184
Lsi08G012120Cucurbita maxima (Rimu)cmalsiB460
Lsi08G012120Cucurbita maxima (Rimu)cmalsiB739
Lsi08G012120Cucurbita moschata (Rifu)cmolsiB027
Lsi08G012120Cucurbita moschata (Rifu)cmolsiB070
Lsi08G012120Cucurbita moschata (Rifu)cmolsiB445
Lsi08G012120Cucurbita moschata (Rifu)cmolsiB731
Lsi08G012120Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G012120Cucurbita pepo (Zucchini)cpelsiB651
Lsi08G012120Wild cucumber (PI 183967)cpilsiB140
Lsi08G012120Wild cucumber (PI 183967)cpilsiB317
Lsi08G012120Watermelon (Charleston Gray)lsiwcgB422
Lsi08G012120Watermelon (Charleston Gray)lsiwcgB434
Lsi08G012120Watermelon (97103) v1lsiwmB479
Lsi08G012120Watermelon (97103) v1lsiwmB484
Lsi08G012120Cucumber (Gy14) v2cgyblsiB128
Lsi08G012120Silver-seed gourdcarlsiB128
Lsi08G012120Silver-seed gourdcarlsiB580
Lsi08G012120Cucumber (Chinese Long) v3cuclsiB154
Lsi08G012120Cucumber (Chinese Long) v3cuclsiB337
Lsi08G012120Watermelon (97103) v2lsiwmbB430
Lsi08G012120Bottle gourd (USVL1VR-Ls)lsilsiB151
Lsi08G012120Cucumber (Gy14) v1cgylsiB116