CmoCh12G002930 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G002930
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase subunit b
LocationCmo_Chr12 : 1846956 .. 1848817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATATCACAATCCACCTCCTTCGGAGCCCAGCATCCTCGCTATCACTCGTTCCTTTCTCCAATTCAACGTGGGACCCTACCAAATCCACCCCTTTGGGGCCCAGAGTCCTTACTGGCACACTGCCTCATGCCTACTCCCCTCGGGGAACAGCGAGAAAGCTGACACATATTGTCCCATTTGTAACAACTCAGGCTCACCACTAGCAGATATTGTTCTTTCCCTTTTGGGCTTCTCCTCAAGGCTTTAAAACACGTTTGCTAGGGGAAGGTTTCCACTCTTTTATAAAGGGTCTTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATAACTGATGTTCGGAATGCTTTTCAACCATTTTCACTCTTTTAAGTTATGTAACTAGTTGAGCAGCAGGTTCACGTGACAAAAATAAAAGAGAATCGTATAATGAAATCGATAAAATGTAACAAGAAATTAAAGAGCGATATGTGACAAAAATAAAAGAATGTGTCAATGAGATATAATATAATGTAACTAAATAAGGGATATTGTGATAGAGGGGTCACATGAGGGCGGGGAAAAGAGACCTAAGCTTGTGAAGTCCACGTGGGCACCATAGGGGTTGGGGCATTGGGTGATTTAGGAGGGTAGGTGGCTTTGGACTTTCAATTGGAGAGATAGTGGACCCCACGGACACCTGTATTATTGTCATTTGGGCCTACCTTCCCCGTCCATATTCATCACTTGGGCCTTGGCCCATAACTTCTCTCTCGATTATAAATATGTCCGCACGTGAGTTCGGCATGCGCAAGTTTTTTTCGGTTTTTCCATGTCGGCCATAATTGATTGGGGTGGGAAAGAAAAAAGGCCGTAATTGACTTGGGCCCACATTGATTTGGGCCGAAATTAATTGGGCTGGTAAAGAAAAAGCCCATATCTCGCAGAAGCTCAAGAAAGAAAAGCCCGGCCCAGTCCACTCCATTCCACAGGCACGCGCACATCACGTGAGAAAAGATCCCAATCTCTTGGCCAAGGAAAGGCGGAAGCGAGCAGAGCCTTATCAAATTGTGTGGCGAAGAATGCAGAGTGCATAATGTAGATAACCCTAATCTCCACCTCATTTCGTTTCTCAATCACTCACCAGATCCGCCATTACCGTTCACTCGAAGCTCCAAAGCTCCAAAGCTCCAAAGCTCCAAAGCTCGACGCAGCCATGGCGAATGTAATAATGGCCTCCTCCAAACCCCTCTCCCCGCCCCCTTCCATCGCCTCCACCAAAACCCCCAAATTCTCCATTCCCAAAACCCTAACCCTAACCCTAACCCCCACGATTCTCAAAAACCCCCAATTCGTCTCCCTCTCCACCACCACTCTCAAATCCCTCTCCCTCATCGCCGCCACATCGCTCTCCTTCGCGCCTCCTTCCCTCGCCGAAGAGATCGAAAAGGCCGCGCTCTTCGATTTCAACCTCACTCTTCCGATCATGATGGCGCAATTCCTCCTCCTCATGGTCGGTCTCGACAAACTCTACTTCTCTCCACTCGGCAAATTCATGGACGAAAGAGACGCCGCCATTAAAGAGAAGCTCAACAGCGTTAAAGACACATCCGAGGAGGTGAAGCAGTTGGATGAACAAGCCGCAGCGGTGATGAGGGCGGCCAGAGCGGAGATTTCAGCGGCGCTTAACAAGATGAAGAAGGAAACTCAGGCAGAAGTGGAGGAGAAACTGGCGGAGGGAAGGAAGAAAATCGATGCGGAGTTGCAGGAGGCATTGGCGAGCTTGGAGAATCAGAAGGTGGAGACCATTAAATCCCTGGATGCTCAAATTGCAGCTCTTAGCGACGAAATCGTCAAGAAGGTTCTTCCCGTTTAG

mRNA sequence

ATGTGGGATATCACAATCCACCTCCTTCGGAGCCCAGCATCCTCGCTATCACTCGTTCCTTTCTCCAATTCAACGTGGGACCCTACCAAATCCACCCCTTTGGGGCCCAGAGTCCTTACTGGCACACTGCCTCATGCCTACTCCCCTCGGGGAACAGCGAGAAAGCTGACACATATTGTCCCATTTATCCGCCATTACCGTTCACTCGAAGCTCCAAAGCTCCAAAGCTCCAAAGCTCCAAAGCTCGACGCAGCCATGGCGAATGTAATAATGGCCTCCTCCAAACCCCTCTCCCCGCCCCCTTCCATCGCCTCCACCAAAACCCCCAAATTCTCCATTCCCAAAACCCTAACCCTAACCCTAACCCCCACGATTCTCAAAAACCCCCAATTCGTCTCCCTCTCCACCACCACTCTCAAATCCCTCTCCCTCATCGCCGCCACATCGCTCTCCTTCGCGCCTCCTTCCCTCGCCGAAGAGATCGAAAAGGCCGCGCTCTTCGATTTCAACCTCACTCTTCCGATCATGATGGCGCAATTCCTCCTCCTCATGGTCGGTCTCGACAAACTCTACTTCTCTCCACTCGGCAAATTCATGGACGAAAGAGACGCCGCCATTAAAGAGAAGCTCAACAGCGTTAAAGACACATCCGAGGAGGTGAAGCAGTTGGATGAACAAGCCGCAGCGGTGATGAGGGCGGCCAGAGCGGAGATTTCAGCGGCGCTTAACAAGATGAAGAAGGAAACTCAGGCAGAAGTGGAGGAGAAACTGGCGGAGGGAAGGAAGAAAATCGATGCGGAGTTGCAGGAGGCATTGGCGAGCTTGGAGAATCAGAAGGTGGAGACCATTAAATCCCTGGATGCTCAAATTGCAGCTCTTAGCGACGAAATCGTCAAGAAGGTTCTTCCCGTTTAG

Coding sequence (CDS)

ATGTGGGATATCACAATCCACCTCCTTCGGAGCCCAGCATCCTCGCTATCACTCGTTCCTTTCTCCAATTCAACGTGGGACCCTACCAAATCCACCCCTTTGGGGCCCAGAGTCCTTACTGGCACACTGCCTCATGCCTACTCCCCTCGGGGAACAGCGAGAAAGCTGACACATATTGTCCCATTTATCCGCCATTACCGTTCACTCGAAGCTCCAAAGCTCCAAAGCTCCAAAGCTCCAAAGCTCGACGCAGCCATGGCGAATGTAATAATGGCCTCCTCCAAACCCCTCTCCCCGCCCCCTTCCATCGCCTCCACCAAAACCCCCAAATTCTCCATTCCCAAAACCCTAACCCTAACCCTAACCCCCACGATTCTCAAAAACCCCCAATTCGTCTCCCTCTCCACCACCACTCTCAAATCCCTCTCCCTCATCGCCGCCACATCGCTCTCCTTCGCGCCTCCTTCCCTCGCCGAAGAGATCGAAAAGGCCGCGCTCTTCGATTTCAACCTCACTCTTCCGATCATGATGGCGCAATTCCTCCTCCTCATGGTCGGTCTCGACAAACTCTACTTCTCTCCACTCGGCAAATTCATGGACGAAAGAGACGCCGCCATTAAAGAGAAGCTCAACAGCGTTAAAGACACATCCGAGGAGGTGAAGCAGTTGGATGAACAAGCCGCAGCGGTGATGAGGGCGGCCAGAGCGGAGATTTCAGCGGCGCTTAACAAGATGAAGAAGGAAACTCAGGCAGAAGTGGAGGAGAAACTGGCGGAGGGAAGGAAGAAAATCGATGCGGAGTTGCAGGAGGCATTGGCGAGCTTGGAGAATCAGAAGGTGGAGACCATTAAATCCCTGGATGCTCAAATTGCAGCTCTTAGCGACGAAATCGTCAAGAAGGTTCTTCCCGTTTAG
Homology
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BLAST of CmoCh12G002930 vs. Swiss-Prot
Match: ATPX_SPIOL (ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2)

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-58
Identity = 147/223 (65.92%), Postives = 175/223 (78.48%), Query Frame = 1 

Query: 86  MANVIMASSKPLSPPPSIAS-TKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSL 145
           MAN+++ASS    P  +  + T  PKF + KT  L L+P  L  P    L+ + LKS ++
Sbjct: 1   MANMLVASSSKTLPTTTTTTITPKPKFPLLKTPLLKLSPPQL--PPLKHLNLSVLKSAAI 60

Query: 146 IAAT-SLSFAP--PSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDE 205
            A   +LSF    PSLAEEIEKA+LFDFNLTLPI+MA+FL LM  LDK+Y++PLG FMD+
Sbjct: 61  TATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDK 120

Query: 206 RDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGR 265
           RDA+IKE+L+ VKDTS EVKQL+EQA AVMRAARAEISAALNKMKKETQ EVE KLAEGR
Sbjct: 121 RDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGR 180

Query: 266 KKIDAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           KKI+ ELQEAL SLE QK +TIKSLD+QI+ALSD+IVKKVLPV
Sbjct: 181 KKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLPV 221

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BLAST of CmoCh12G002930 vs. Swiss-Prot
Match: ATPX_CHLRE (ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.9e-25
Identity = 78/203 (38.42%), Postives = 124/203 (61.08%), Query Frame = 1 

Query: 101 PSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSLIAATSLSFAPPSLAEE 160
           P  A  +  K +  + L L +  +  K  Q   L+     +LS I A +L   P +    
Sbjct: 8   PQQAVVRAAKPAAARPLRLVVRASAQKPQQ--QLAQLAKPALSAIVANALMAMPAAA--- 67

Query: 161 IEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAAIKEKLNSVKDTSEEV 220
            E   +FDFNLTLP+M  +FLLLMV L+K +F+P+GK +DERD  I+ KL SVKD + +V
Sbjct: 68  -EAGKIFDFNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDV 127

Query: 221 KQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKIDAELQEALASLENQKV 280
            +L  +A  ++++AR+++SA +N  K   Q+E+++   E + KI AE++ ++A LE +  
Sbjct: 128 DKLVLEAETILKSARSDVSAMINTKKAAKQSELDKTYNEAKAKITAEVESSIAGLEQESA 187

Query: 281 ETIKSLDAQIAALSDEIVKKVLP 304
             +KSLDAQ+  +S E++K+VLP
Sbjct: 188 SMLKSLDAQVDKISAEVLKRVLP 204

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BLAST of CmoCh12G002930 vs. Swiss-Prot
Match: ATPX_CYAPA (ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-15
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 1 

Query: 157 LAEEIEKA----ALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAAIKEKLNS 216
           LA E E A     LFDF+ TLP+MM Q L+LM+ L+ +++ PL K +DER   I+   N 
Sbjct: 8   LAIETEAAKPEGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNE 67

Query: 217 VKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKIDAELQEAL 276
            +    +  +L  Q    +  AR   S   N  + E Q  V EKL E +KK D+EL  A 
Sbjct: 68  AEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASAT 127

Query: 277 ASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
             LE QK E +KSL++++  LS +I++K+L +
Sbjct: 128 NKLELQKDEALKSLESEVQTLSTKILEKLLGI 159

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BLAST of CmoCh12G002930 vs. Swiss-Prot
Match: ATPX_SYNP1 (ATP synthase subunit b' OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-13
Identity = 48/148 (32.43%), Postives = 86/148 (58.11%), Query Frame = 1 

Query: 155 PSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAAIKEKLNSVK 214
           P L   I +  +FDF+ TLP+M  QFL+L V L+ L + PLG+ +D RD  I+  L   K
Sbjct: 11  PLLFRPILERLMFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAK 70

Query: 215 DTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKIDAELQEALAS 274
           +  ++  +L  Q    +   R E  A + + + E Q     ++A  ++ + AEL +A A 
Sbjct: 71  ERLQQATELANQYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQAE 130

Query: 275 LENQKVETIKSLDAQIAALSDEIVKKVL 303
           ++ QK  T+++L+ Q+++LS++++ K+L
Sbjct: 131 IDQQKQATLQALEGQVSSLSEQLLAKLL 158

[Close]
BLAST of CmoCh12G002930 vs. Swiss-Prot
Match: ATPX_THEEB (ATP synthase subunit b' OS=Thermosynechococcus elongatus (strain BP-1) GN=atpG PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-13
Identity = 44/137 (32.12%), Postives = 84/137 (61.31%), Query Frame = 1 

Query: 166 LFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAAIKEKLNSVKDTSEEVKQLDE 225
           +FDF+ TLP+M  QFL+L V L+ L + PLG+ +D RD  I+  L   K+  ++  +L +
Sbjct: 1   MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAQ 60

Query: 226 QAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKIDAELQEALASLENQKVETIKS 285
           Q    + + R +  A + + + E Q     ++AE ++ + AEL +  A ++ QK  T+++
Sbjct: 61  QYEQELASTRRQAQALIEEARVEAQKIATAEIAEAQQAVQAELLKIQAEIDQQKQATLQA 120

Query: 286 LDAQIAALSDEIVKKVL 303
           L+ Q+A+LS++++ K++
Sbjct: 121 LEGQVASLSEQLLAKLM 137

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BLAST of CmoCh12G002930 vs. TrEMBL
Match: A0A0A0LM10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381850 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 197/219 (89.95%), Postives = 203/219 (92.69%), Query Frame = 1 

Query: 86  MANVIMASSKPLSPPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSLI 145
           MANVIMASSKP SPP SI S KTPKFSIPKTLTL   P  LK PQ +SLST+TLKSLSL 
Sbjct: 1   MANVIMASSKPPSPPLSI-SNKTPKFSIPKTLTLI--PQFLKKPQSISLSTSTLKSLSLF 60

Query: 146 AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAA 205
           AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERD A
Sbjct: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTA 120

Query: 206 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKID 265
           IKEKLNSVKDTSEEVKQLD+QAAAVMRAARAEISAAL KMKKETQAEVEEKLAEGRK+ID
Sbjct: 121 IKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKRID 180

Query: 266 AELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
            ELQEALA+LENQK ETIKSLDAQIAALSD+IVKKVLPV
Sbjct: 181 VELQEALANLENQKAETIKSLDAQIAALSDDIVKKVLPV 216

[Close]
BLAST of CmoCh12G002930 vs. TrEMBL
Match: A0A067KBI4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07152 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.1e-74
Identity = 175/220 (79.55%), Postives = 191/220 (86.82%), Query Frame = 1 

Query: 86  MANVIMASSKPLSPPPS-IASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSL 145
           MA +IMASSKPL P  S I +T  PK  IP+       P + K  Q  SLS++TLKSLSL
Sbjct: 1   MAAMIMASSKPLIPLSSAIPTTTRPKIQIPQLSLPVKLPKVTKT-QLASLSSSTLKSLSL 60

Query: 146 IAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDA 205
           +AATS +FAPPSLAEEIEKAALFDFNLTLPIMM QFLLLMVGLDK+YFSPLGKFMDERDA
Sbjct: 61  LAATSFTFAPPSLAEEIEKAALFDFNLTLPIMMVQFLLLMVGLDKIYFSPLGKFMDERDA 120

Query: 206 AIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKI 265
           AIKEKLNSVKDTSEEVKQL+EQAAAVMRAARAEISAALNKMKKETQAE+E+KLAE +KKI
Sbjct: 121 AIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQAELEQKLAEEKKKI 180

Query: 266 DAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           +AELQEAL +LE QK ETIKSLD+QIAALSDEIVKKVLPV
Sbjct: 181 EAELQEALGNLEKQKEETIKSLDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of CmoCh12G002930 vs. TrEMBL
Match: A9PE72_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s01830g PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 170/226 (75.22%), Postives = 190/226 (84.07%), Query Frame = 1 

Query: 86  MANVIMASSKPLS-------PPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTT 145
           MAN+IM +SKPL        P  S    + P+ S PK L +T        PQ +SLST+T
Sbjct: 1   MANMIMGTSKPLITLSSSSLPTNSKPKLQIPRLSFPKLLKIT-------KPQLLSLSTST 60

Query: 146 LKSLSLIAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKF 205
           LKSLSLIAATSL+FAPPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDK++FSPLG F
Sbjct: 61  LKSLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNF 120

Query: 206 MDERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLA 265
           MDERDAAIKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAALNKMKKETQ EVE+KLA
Sbjct: 121 MDERDAAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLA 180

Query: 266 EGRKKIDAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           EGRKKI+AELQEALA L+ QK ETIK+LD+QIAALSDEIVKKVLPV
Sbjct: 181 EGRKKIEAELQEALAKLDTQKEETIKALDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of CmoCh12G002930 vs. TrEMBL
Match: A9PFE9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27170g PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.9e-71
Identity = 169/223 (75.78%), Postives = 191/223 (85.65%), Query Frame = 1 

Query: 86  MANVIMASSKPLSP--PPSIASTKTPKFSIPKTLTLTLTPTILK--NPQFVSLSTTTLKS 145
           MAN+IMASSKPL      S+ +   PK  IP+       P ILK   PQ +SLST+TLKS
Sbjct: 1   MANMIMASSKPLITLSSSSLPTNNKPKLQIPQLSF----PKILKITKPQLLSLSTSTLKS 60

Query: 146 LSLIAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDE 205
           LSLIAATSL+FAPPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDK++F+PLG FMDE
Sbjct: 61  LSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFTPLGNFMDE 120

Query: 206 RDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGR 265
           RD+AIKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAALNKMKKETQ EVE+KLAEGR
Sbjct: 121 RDSAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEGR 180

Query: 266 KKIDAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           KKI+A+LQEALA LE QK ET+K+LD+QIAALSD IVKKVLPV
Sbjct: 181 KKIEADLQEALAKLETQKEETMKALDSQIAALSDGIVKKVLPV 219

[Close]
BLAST of CmoCh12G002930 vs. TrEMBL
Match: B9RP32_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923760 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 4.6e-69
Identity = 172/232 (74.14%), Postives = 190/232 (81.90%), Query Frame = 1 

Query: 73  KLQS-SKAPKLDAAMANVIMASSKPLSPPPSIASTKTPKFSIPKTLTLTLTPTILKNPQF 132
           K QS S  P   A  A VIMASSKPL    S   TK PK  I +   LT  P I K  Q 
Sbjct: 340 KFQSFSSIPPPPAMAAAVIMASSKPLISLSSGLPTK-PKLQISQLAHLTKLPKINKT-QL 399

Query: 133 VSLSTTTLKSLSLIAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLY 192
            SLS++TLKS+SL+AATS +FAPPSLA EIEKAALFDFNLTLPIMMAQFL+LMV LDK+Y
Sbjct: 400 ASLSSSTLKSISLLAATSFTFAPPSLAAEIEKAALFDFNLTLPIMMAQFLILMVALDKIY 459

Query: 193 FSPLGKFMDERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQA 252
           FSPLGKFMDERDAAIKEKL+SVKDTS EVKQL+EQAAAVMRAARAEI+AAL+KMKKETQ 
Sbjct: 460 FSPLGKFMDERDAAIKEKLSSVKDTSSEVKQLEEQAAAVMRAARAEIAAALSKMKKETQT 519

Query: 253 EVEEKLAEGRKKIDAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLP 304
           E+EE+LA  +KKI+AELQEAL +LE QK ETIKSLD+QIAALSDEIVKKVLP
Sbjct: 520 ELEERLAAEKKKIEAELQEALGNLEKQKEETIKSLDSQIAALSDEIVKKVLP 569

[Close]
BLAST of CmoCh12G002930 vs. TAIR10
Match: AT4G32260.1 (AT4G32260.1 ATPase, F0 complex, subunit B/B', bacterial/chloroplast)

HSP 1 Score: 238.0 bits (606), Expect = 7.4e-63
Identity = 151/223 (67.71%), Postives = 179/223 (80.27%), Query Frame = 1 

Query: 87  ANVIMASSKPLSPPPSIASTKTP-KFSIPKTLTLTLTPTILKNP-----QFVSLSTTTLK 146
           AN IMASSKPL    S++S + P +  IPK   L   P  L +      + +SLS+ T K
Sbjct: 3   ANSIMASSKPLI---SLSSNQQPNRVQIPKFAKLPQIPKSLTSSTDLRSKALSLSSATAK 62

Query: 147 SLSLIAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMD 206
           SL+LIAA    FAPPS+AE +EKA LFDFNLTLPI++ +FL LM  LDK+Y+SPLG FMD
Sbjct: 63  SLALIAA----FAPPSMAEAMEKAQLFDFNLTLPIIVVEFLFLMFALDKVYYSPLGNFMD 122

Query: 207 ERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEG 266
           +RDA+IKEKL SVKDTS EVK+LDEQAAAVMRAARAEI+AALNKMKKETQ EVEEKLAEG
Sbjct: 123 QRDASIKEKLASVKDTSTEVKELDEQAAAVMRAARAEIAAALNKMKKETQVEVEEKLAEG 182

Query: 267 RKKIDAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLP 304
           RKK++ EL+EALASLE+QK ETIK+LD+QIAALS++IVKKVLP
Sbjct: 183 RKKVEEELKEALASLESQKEETIKALDSQIAALSEDIVKKVLP 218

[Close]
BLAST of CmoCh12G002930 vs. NCBI nr
Match: gi|659088922|ref|XP_008445233.1| (PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 1.5e-89
Identity = 201/219 (91.78%), Postives = 207/219 (94.52%), Query Frame = 1 

Query: 86  MANVIMASSKPLSPPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSLI 145
           MANVIMASSKPLSPP SI S KTPKFSIPKTLTL   P  LKNPQ +SLST+TLKSLSL 
Sbjct: 1   MANVIMASSKPLSPPLSI-SNKTPKFSIPKTLTLI--PQFLKNPQSISLSTSTLKSLSLF 60

Query: 146 AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAA 205
           AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDK+YFSPLGKFMDERDAA
Sbjct: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKIYFSPLGKFMDERDAA 120

Query: 206 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKID 265
           IKEKL+SVKDTSE VKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRK+ID
Sbjct: 121 IKEKLSSVKDTSEGVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKRID 180

Query: 266 AELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           AELQEALA+LENQK ETIKSLDAQIAALSDEIVKKVLPV
Sbjct: 181 AELQEALANLENQKAETIKSLDAQIAALSDEIVKKVLPV 216

[Close]
BLAST of CmoCh12G002930 vs. NCBI nr
Match: gi|449441904|ref|XP_004138722.1| (PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 2.4e-87
Identity = 197/219 (89.95%), Postives = 203/219 (92.69%), Query Frame = 1 

Query: 86  MANVIMASSKPLSPPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSLI 145
           MANVIMASSKP SPP SI S KTPKFSIPKTLTL   P  LK PQ +SLST+TLKSLSL 
Sbjct: 1   MANVIMASSKPPSPPLSI-SNKTPKFSIPKTLTLI--PQFLKKPQSISLSTSTLKSLSLF 60

Query: 146 AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDAA 205
           AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERD A
Sbjct: 61  AATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDTA 120

Query: 206 IKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKID 265
           IKEKLNSVKDTSEEVKQLD+QAAAVMRAARAEISAAL KMKKETQAEVEEKLAEGRK+ID
Sbjct: 121 IKEKLNSVKDTSEEVKQLDDQAAAVMRAARAEISAALTKMKKETQAEVEEKLAEGRKRID 180

Query: 266 AELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
            ELQEALA+LENQK ETIKSLDAQIAALSD+IVKKVLPV
Sbjct: 181 VELQEALANLENQKAETIKSLDAQIAALSDDIVKKVLPV 216

[Close]
BLAST of CmoCh12G002930 vs. NCBI nr
Match: gi|802627065|ref|XP_012076536.1| (PREDICTED: ATP synthase subunit b', chloroplastic [Jatropha curcas])

HSP 1 Score: 287.3 bits (734), Expect = 3.0e-74
Identity = 175/220 (79.55%), Postives = 191/220 (86.82%), Query Frame = 1 

Query: 86  MANVIMASSKPLSPPPS-IASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTTLKSLSL 145
           MA +IMASSKPL P  S I +T  PK  IP+       P + K  Q  SLS++TLKSLSL
Sbjct: 1   MAAMIMASSKPLIPLSSAIPTTTRPKIQIPQLSLPVKLPKVTKT-QLASLSSSTLKSLSL 60

Query: 146 IAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKFMDERDA 205
           +AATS +FAPPSLAEEIEKAALFDFNLTLPIMM QFLLLMVGLDK+YFSPLGKFMDERDA
Sbjct: 61  LAATSFTFAPPSLAEEIEKAALFDFNLTLPIMMVQFLLLMVGLDKIYFSPLGKFMDERDA 120

Query: 206 AIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLAEGRKKI 265
           AIKEKLNSVKDTSEEVKQL+EQAAAVMRAARAEISAALNKMKKETQAE+E+KLAE +KKI
Sbjct: 121 AIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQAELEQKLAEEKKKI 180

Query: 266 DAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           +AELQEAL +LE QK ETIKSLD+QIAALSDEIVKKVLPV
Sbjct: 181 EAELQEALGNLEKQKEETIKSLDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of CmoCh12G002930 vs. NCBI nr
Match: gi|566213731|ref|XP_002324301.2| (hypothetical protein POPTR_0018s01830g [Populus trichocarpa])

HSP 1 Score: 281.2 bits (718), Expect = 2.2e-72
Identity = 170/226 (75.22%), Postives = 190/226 (84.07%), Query Frame = 1 

Query: 86  MANVIMASSKPLS-------PPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTT 145
           MAN+IM +SKPL        P  S    + P+ S PK L +T        PQ +SLST+T
Sbjct: 1   MANMIMGTSKPLITLSSSSLPTNSKPKLQIPRLSFPKLLKIT-------KPQLLSLSTST 60

Query: 146 LKSLSLIAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKF 205
           LKSLSLIAATSL+FAPPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDK++FSPLG F
Sbjct: 61  LKSLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNF 120

Query: 206 MDERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLA 265
           MDERDAAIKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAALNKMKKETQ EVE+KLA
Sbjct: 121 MDERDAAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLA 180

Query: 266 EGRKKIDAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           EGRKKI+AELQEALA L+ QK ETIK+LD+QIAALSDEIVKKVLPV
Sbjct: 181 EGRKKIEAELQEALAKLDTQKEETIKALDSQIAALSDEIVKKVLPV 219

[Close]
BLAST of CmoCh12G002930 vs. NCBI nr
Match: gi|743881832|ref|XP_011036570.1| (PREDICTED: ATP synthase subunit b', chloroplastic-like [Populus euphratica])

HSP 1 Score: 277.3 bits (708), Expect = 3.1e-71
Identity = 168/226 (74.34%), Postives = 189/226 (83.63%), Query Frame = 1 

Query: 86  MANVIMASSKPLS-------PPPSIASTKTPKFSIPKTLTLTLTPTILKNPQFVSLSTTT 145
           MAN+IM +SKPL        P  S    + P+ S PK L +T        PQ +SLST+T
Sbjct: 1   MANMIMGTSKPLITLSSSSLPTNSKPKLQIPRLSFPKLLKIT-------KPQLLSLSTST 60

Query: 146 LKSLSLIAATSLSFAPPSLAEEIEKAALFDFNLTLPIMMAQFLLLMVGLDKLYFSPLGKF 205
           LKSLSLIA+TSL+FAPPSLAEEIEKAALFDFNLTLPI+M +FL+LMV LDK++FSPLG F
Sbjct: 61  LKSLSLIASTSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNF 120

Query: 206 MDERDAAIKEKLNSVKDTSEEVKQLDEQAAAVMRAARAEISAALNKMKKETQAEVEEKLA 265
           MDERDAAIKEKL+SVKDTSEEVKQL+EQAAAVMRAARAEISAALNKMKKETQ EVE+KLA
Sbjct: 121 MDERDAAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLA 180

Query: 266 EGRKKIDAELQEALASLENQKVETIKSLDAQIAALSDEIVKKVLPV 305
           EGRKKI+ ELQEALA L+ QK ETIK+LD+QIAALSDEIVKKVLPV
Sbjct: 181 EGRKKIEVELQEALAKLDIQKEETIKALDSQIAALSDEIVKKVLPV 219

The following BLAST results are available for this feature:
BLAST of CmoCh12G002930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPX_SPIOL1.8e-5865.92ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2[more]
ATPX_CHLRE9.9e-2538.42ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1... [more]
ATPX_CYAPA3.2e-1538.82ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1[more]
ATPX_SYNP11.0e-1332.43ATP synthase subunit b' OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1[more]
ATPX_THEEB2.3e-1332.12ATP synthase subunit b' OS=Thermosynechococcus elongatus (strain BP-1) GN=atpG P... [more]
BLAST of CmoCh12G002930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM10_CUCSA1.7e-8789.95Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381850 PE=3 SV=1[more]
A0A067KBI4_JATCU2.1e-7479.55Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07152 PE=3 SV=1[more]
A9PE72_POPTR1.5e-7275.22Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s01830g PE=2 SV=1[more]
A9PFE9_POPTR4.9e-7175.78Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27170g PE=2 SV=1[more]
B9RP32_RICCO4.6e-6974.14Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923760 PE=4 SV=1[more]
BLAST of CmoCh12G002930 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32260.17.4e-6367.71 ATPase, F0 complex, subunit B/B', bacterial/chloroplast[more]
BLAST of CmoCh12G002930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088922|ref|XP_008445233.1|1.5e-8991.78PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis melo][more]
gi|449441904|ref|XP_004138722.1|2.4e-8789.95PREDICTED: ATP synthase subunit b', chloroplastic [Cucumis sativus][more]
gi|802627065|ref|XP_012076536.1|3.0e-7479.55PREDICTED: ATP synthase subunit b', chloroplastic [Jatropha curcas][more]
gi|566213731|ref|XP_002324301.2|2.2e-7275.22hypothetical protein POPTR_0018s01830g [Populus trichocarpa][more]
gi|743881832|ref|XP_011036570.1|3.1e-7174.34PREDICTED: ATP synthase subunit b', chloroplastic-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002146ATP_synth_b/b'su_bac/chlpt
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009735 response to cytokinin
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002930.1CmoCh12G002930.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002146ATPase, F0 complex, subunit B/B', bacterial/chloroplastPFAMPF00430ATP-synt_Bcoord: 172..302
score: 4.9
NoneNo IPR availableunknownCoilCoilcoord: 206..281
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G002930Cucsa.162520Cucumber (Gy14) v1cgycmoB0448
CmoCh12G002930Cla022333Watermelon (97103) v1cmowmB134
CmoCh12G002930Csa2G381850Cucumber (Chinese Long) v2cmocuB149
CmoCh12G002930MELO3C011269Melon (DHL92) v3.5.1cmomeB151
CmoCh12G002930ClCG08G013430Watermelon (Charleston Gray)cmowcgB161
CmoCh12G002930CSPI02G23620Wild cucumber (PI 183967)cmocpiB150
CmoCh12G002930Lsi08G012120Bottle gourd (USVL1VR-Ls)cmolsiB175
CmoCh12G002930Cp4.1LG07g02970Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G002930MELO3C011269.2Melon (DHL92) v3.6.1cmomedB167
CmoCh12G002930CsaV3_2G032160Cucumber (Chinese Long) v3cmocucB0176
CmoCh12G002930Cla97C08G156800Watermelon (97103) v2cmowmbB178
CmoCh12G002930Bhi04G000775Wax gourdcmowgoB0204
CmoCh12G002930CsGy2G023380Cucumber (Gy14) v2cgybcmoB160
CmoCh12G002930Carg03933Silver-seed gourdcarcmoB1310
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G002930Cucurbita moschata (Rifu)cmocmoB006
CmoCh12G002930Cucurbita moschata (Rifu)cmocmoB139
CmoCh12G002930Cucurbita moschata (Rifu)cmocmoB142
CmoCh12G002930Cucurbita moschata (Rifu)cmocmoB156
CmoCh12G002930Cucurbita maxima (Rimu)cmacmoB035
CmoCh12G002930Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G002930Cucurbita maxima (Rimu)cmacmoB455
CmoCh12G002930Cucurbita maxima (Rimu)cmacmoB770
CmoCh12G002930Watermelon (Charleston Gray)cmowcgB153
CmoCh12G002930Cucurbita pepo (Zucchini)cmocpeB154
CmoCh12G002930Cucurbita pepo (Zucchini)cmocpeB167
CmoCh12G002930Cucurbita pepo (Zucchini)cmocpeB173
CmoCh12G002930Bottle gourd (USVL1VR-Ls)cmolsiB164
CmoCh12G002930Cucumber (Gy14) v2cgybcmoB889
CmoCh12G002930Silver-seed gourdcarcmoB0192
CmoCh12G002930Silver-seed gourdcarcmoB0280
CmoCh12G002930Silver-seed gourdcarcmoB0869
CmoCh12G002930Silver-seed gourdcarcmoB0912
CmoCh12G002930Cucumber (Chinese Long) v3cmocucB0201
CmoCh12G002930Watermelon (97103) v2cmowmbB177